Published in J Mol Microbiol Biotechnol on January 01, 2002
The Transporter Classification Database: recent advances. Nucleic Acids Res (2008) 4.26
Comparative genomic analyses of the bacterial phosphotransferase system. Microbiol Mol Biol Rev (2005) 2.26
Protein secretion and membrane insertion systems in gram-negative bacteria. J Membr Biol (2007) 1.51
Gap junctional proteins of animals: the innexin/pannexin superfamily. Prog Biophys Mol Biol (2007) 1.41
The beta-barrel finder (BBF) program, allowing identification of outer membrane beta-barrel proteins encoded within prokaryotic genomes. Protein Sci (2002) 1.38
Bioinformatic analyses of transmembrane transport: novel software for deducing protein phylogeny, topology, and evolution. J Mol Microbiol Biotechnol (2009) 1.21
Transport capabilities of eleven gram-positive bacteria: comparative genomic analyses. Biochim Biophys Acta (2007) 1.14
Phylogenetic characterization of transport protein superfamilies: superiority of SuperfamilyTree programs over those based on multiple alignments. J Mol Microbiol Biotechnol (2012) 1.06
Bioinformatic characterization of p-type ATPases encoded within the fully sequenced genomes of 26 eukaryotes. J Membr Biol (2009) 1.01
Protein-translocating trimeric autotransporters of gram-negative bacteria. J Bacteriol (2006) 0.94
Evolution of the oligopeptide transporter family. J Membr Biol (2011) 0.93
Animal Ca2+ release-activated Ca2+ (CRAC) channels appear to be homologous to and derived from the ubiquitous cation diffusion facilitators. BMC Res Notes (2010) 0.92
The bacterial intimins and invasins: a large and novel family of secreted proteins. PLoS One (2010) 0.92
Functional Promiscuity of Homologues of the Bacterial ArsA ATPases. Int J Microbiol (2010) 0.91
Topological and phylogenetic analyses of bacterial holin families and superfamilies. Biochim Biophys Acta (2013) 0.90
The transporter-opsin-G protein-coupled receptor (TOG) superfamily. FEBS J (2013) 0.88
Characterization of a novel riboswitch-regulated lysine transporter in Aggregatibacter actinomycetemcomitans. J Bacteriol (2010) 0.85
Defense against cannibalism: the SdpI family of bacterial immunity/signal transduction proteins. J Membr Biol (2010) 0.84
Bioinformatic characterization of the trimeric intracellular cation-specific channel protein family. J Membr Biol (2011) 0.81
The autoinducer-2 exporter superfamily. J Mol Microbiol Biotechnol (2010) 0.79
Molecular epidemiology of genogroup II noroviruses infection in outpatients with acute gastroenteritis in Nanjing, China (2010-2013). Biomed Res Int (2014) 0.78
Three-Dimensional Phylogeny Explorer: distinguishing paralogs, lateral transfer, and violation of "molecular clock" assumption with 3D visualization. BMC Bioinformatics (2007) 0.78
Characterization of a novel enterovirus serotype and an enterovirus EV-B93 isolated from acute flaccid paralysis patients. PLoS One (2013) 0.78
Properties and Phylogeny of 76 Families of Bacterial and Eukaryotic Organellar Outer Membrane Pore-Forming Proteins. PLoS One (2016) 0.76
Analysis of gene expression profile identifies potential biomarkers for atherosclerosis. Mol Med Rep (2016) 0.75
Identification of functional pathways associated with the conditional ablation of serum response factor in Dstncorn1 mice. Mol Med Rep (2016) 0.75
Identification potential biomarkers in pulmonary tuberculosis and latent infection based on bioinformatics analysis. BMC Infect Dis (2016) 0.75
Directly reprogrammed fibroblasts show global epigenetic remodeling and widespread tissue contribution. Cell Stem Cell (2007) 21.58
Role of the murine reprogramming factors in the induction of pluripotency. Cell (2009) 7.46
The transporter classification (TC) system, 2002. Crit Rev Biochem Mol Biol (2002) 2.56
Combinatorial transcriptional control of the lactose operon of Escherichia coli. Proc Natl Acad Sci U S A (2007) 2.51
Type II protein secretion and its relationship to bacterial type IV pili and archaeal flagella. Microbiology (2003) 2.48
Comparative genomic analyses of the bacterial phosphotransferase system. Microbiol Mol Biol Rev (2005) 2.26
Transcriptome analysis of Crp-dependent catabolite control of gene expression in Escherichia coli. J Bacteriol (2004) 2.20
Two families of mechanosensitive channel proteins. Microbiol Mol Biol Rev (2003) 2.12
Phylogeny as a guide to structure and function of membrane transport proteins. Mol Membr Biol (2004) 2.07
Genomic comparison of P-type ATPase ion pumps in Arabidopsis and rice. Plant Physiol (2003) 1.97
Protein-translocating outer membrane porins of Gram-negative bacteria. Biochim Biophys Acta (2002) 1.83
The multidrug/oligosaccharidyl-lipid/polysaccharide (MOP) exporter superfamily. Eur J Biochem (2003) 1.76
The major facilitator superfamily (MFS) revisited. FEBS J (2012) 1.72
A genomic analysis of the archaeal system Ignicoccus hospitalis-Nanoarchaeum equitans. Genome Biol (2008) 1.60
Functional interactions between the carbon and iron utilization regulators, Crp and Fur, in Escherichia coli. J Bacteriol (2005) 1.54
Gap junctional proteins of animals: the innexin/pannexin superfamily. Prog Biophys Mol Biol (2007) 1.41
The beta-barrel finder (BBF) program, allowing identification of outer membrane beta-barrel proteins encoded within prokaryotic genomes. Protein Sci (2002) 1.38
The ascorbate transporter of Escherichia coli. J Bacteriol (2003) 1.36
The ion transporter superfamily. Biochim Biophys Acta (2003) 1.36
The general protein secretory pathway: phylogenetic analyses leading to evolutionary conclusions. Biochim Biophys Acta (2003) 1.34
Voltage-dependent anion channels (VDACs) recruit Parkin to defective mitochondria to promote mitochondrial autophagy. J Biol Chem (2012) 1.33
The IUBMB-endorsed transporter classification system. Mol Biotechnol (2004) 1.32
Sequence and phylogenetic analyses of the twin-arginine targeting (Tat) protein export system. Arch Microbiol (2002) 1.30
The principal chloroquine resistance protein of Plasmodium falciparum is a member of the drug/metabolite transporter superfamily. Microbiology (2004) 1.29
A simple sensitive program for detecting internal repeats in sets of multiply aligned homologous proteins. J Mol Microbiol Biotechnol (2002) 1.24
Bioinformatic analyses of transmembrane transport: novel software for deducing protein phylogeny, topology, and evolution. J Mol Microbiol Biotechnol (2009) 1.21
Catabolite repression and activation in Bacillus subtilis: dependency on CcpA, HPr, and HprK. J Bacteriol (2005) 1.20
The amino acid-polyamine-organocation superfamily. J Mol Microbiol Biotechnol (2012) 1.20
Extra domains in secondary transport carriers and channel proteins. Biochim Biophys Acta (2006) 1.17
Transport capabilities of eleven gram-positive bacteria: comparative genomic analyses. Biochim Biophys Acta (2007) 1.14
Membrane porters of ATP-binding cassette transport systems are polyphyletic. J Membr Biol (2009) 1.14
A transporter of Escherichia coli specific for L- and D-methionine is the prototype for a new family within the ABC superfamily. Arch Microbiol (2003) 1.14
In silico and transcriptional analysis of carbohydrate uptake systems of Streptomyces coelicolor A3(2). J Bacteriol (2004) 1.14
Web-based programs for the display and analysis of transmembrane alpha-helices in aligned protein sequences. J Mol Microbiol Biotechnol (2003) 1.13
The tripartite tricarboxylate transporter (TTT) family. Res Microbiol (2003) 1.13
Ser/Thr/Tyr protein phosphorylation in bacteria - for long time neglected, now well established. J Mol Microbiol Biotechnol (2005) 1.13
Overexpression of the Escherichia coli sugE gene confers resistance to a narrow range of quaternary ammonium compounds. J Bacteriol (2002) 1.11
Protein secretion systems of Pseudomonas aeruginosa and P fluorescens. Biochim Biophys Acta (2003) 1.10
The p-type ATPase superfamily. J Mol Microbiol Biotechnol (2010) 1.09
The bile/arsenite/riboflavin transporter (BART) superfamily. FEBS J (2007) 1.07
Phylogenetic characterization of transport protein superfamilies: superiority of SuperfamilyTree programs over those based on multiple alignments. J Mol Microbiol Biotechnol (2012) 1.06
Biofilm-defective mutants of Bacillus subtilis. J Mol Microbiol Biotechnol (2004) 1.05
Multidrug resistance: phylogenetic characterization of superfamilies of secondary carriers that include drug exporters. Methods Mol Biol (2010) 1.05
Phylogeny of phosphoryl transfer proteins of the phosphoenolpyruvate-dependent sugar-transporting phosphotransferase system. Res Microbiol (2002) 1.05
Regulation of sigL expression by the catabolite control protein CcpA involves a roadblock mechanism in Bacillus subtilis: potential connection between carbon and nitrogen metabolism. J Bacteriol (2005) 1.04
Evolutionary origins of members of a superfamily of integral membrane cytochrome c biogenesis proteins. Biochim Biophys Acta (2007) 1.03
Lysophospholipid flipping across the Escherichia coli inner membrane catalyzed by a transporter (LplT) belonging to the major facilitator superfamily. J Biol Chem (2005) 1.03
Reversing transmembrane electron flow: the DsbD and DsbB protein families. J Mol Microbiol Biotechnol (2003) 1.03
The IUBMB-endorsed transporter classification system. Methods Mol Biol (2003) 1.03
BioV Suite--a collection of programs for the study of transport protein evolution. FEBS J (2012) 1.03
Bioinformatic characterization of p-type ATPases encoded within the fully sequenced genomes of 26 eukaryotes. J Membr Biol (2009) 1.01
Domain analysis of transcriptional regulators bearing PTS regulatory domains. Res Microbiol (2002) 0.99
Molecular modeling of the bacterial outer membrane receptor energizer, ExbBD/TonB, based on homology with the flagellar motor, MotAB. Biochim Biophys Acta (2003) 0.99
Evolutionary relationship between 5+5 and 7+7 inverted repeat folds within the amino acid-polyamine-organocation superfamily. Proteins (2013) 0.98
Education for Humanity. Water Air Soil Pollut (2009) 0.98
A novel mechanism of transposon-mediated gene activation. PLoS Genet (2009) 0.96
Bioinformatic analyses of the bacterial L-ascorbate phosphotransferase system permease family. J Mol Microbiol Biotechnol (2003) 0.95
The urea transporter (UT) family: bioinformatic analyses leading to structural, functional, and evolutionary predictions. Receptors Channels (2003) 0.95
The phagosomal nutrient transporter (Pht) family. Microbiology (2008) 0.95
Carbonic anhydrases fused to anion transporters of the SulP family: evidence for a novel type of bicarbonate transporter. J Mol Microbiol Biotechnol (2004) 0.95
A mechanism of transposon-mediated directed mutation. Mol Microbiol (2009) 0.94
Topological predictions for integral membrane permeases of the phosphoenolpyruvate:sugar phosphotransferase system. J Mol Microbiol Biotechnol (2006) 0.94
Sequence similarity between the channel-forming domains of voltage-gated ion channel proteins and the C-terminal domains of secondary carriers of the major facilitator superfamily. Microbiology (2002) 0.94
Protein-translocating trimeric autotransporters of gram-negative bacteria. J Bacteriol (2006) 0.94
The copper transporter (Ctr) family of Cu+ uptake systems. J Mol Microbiol Biotechnol (2006) 0.94
Regulation of carbon utilization by sulfur availability in Escherichia coli and Salmonella typhimurium. Microbiology (2002) 0.93
Evolution of the oligopeptide transporter family. J Membr Biol (2011) 0.93
In vitro phosphorylation of key metabolic enzymes from Bacillus subtilis: PrkC phosphorylates enzymes from different branches of basic metabolism. J Mol Microbiol Biotechnol (2010) 0.93
The bacterial intimins and invasins: a large and novel family of secreted proteins. PLoS One (2010) 0.92
Animal Ca2+ release-activated Ca2+ (CRAC) channels appear to be homologous to and derived from the ubiquitous cation diffusion facilitators. BMC Res Notes (2010) 0.92
Comparative genomics of metabolic capacities of regulons controlled by cis-regulatory RNA motifs in bacteria. BMC Genomics (2013) 0.91
Transposon-mediated adaptive and directed mutations and their potential evolutionary benefits. J Mol Microbiol Biotechnol (2012) 0.91
Functional Promiscuity of Homologues of the Bacterial ArsA ATPases. Int J Microbiol (2010) 0.91
Sec61beta--a component of the archaeal protein secretory system. Trends Biochem Sci (2002) 0.90
Topological and phylogenetic analyses of bacterial holin families and superfamilies. Biochim Biophys Acta (2013) 0.90
A stochastic automaton shows how enzyme assemblies may contribute to metabolic efficiency. BMC Syst Biol (2008) 0.90
Pathways of transport protein evolution: recent advances. Biol Chem (2011) 0.89
Functional characterization of the heterooligomeric EbrAB multidrug efflux transporter of Bacillus subtilis. Biochemistry (2007) 0.88
The transporter-opsin-G protein-coupled receptor (TOG) superfamily. FEBS J (2013) 0.88
Sequence similarity between multidrug resistance efflux pumps of the ABC and RND superfamilies. Microbiology (2004) 0.88
Expansion of the APC superfamily of secondary carriers. Proteins (2014) 0.87
Comprehensive analysis of transport proteins encoded within the genome of Bdellovibrio bacteriovorus. Genomics (2007) 0.87
Regulation of crp gene expression by the catabolite repressor/activator, Cra, in Escherichia coli. J Mol Microbiol Biotechnol (2014) 0.87
The iron/lead transporter superfamily of Fe/Pb2+ uptake systems. J Mol Microbiol Biotechnol (2006) 0.86
Bioinformatic characterization of the 4-Toluene Sulfonate Uptake Permease (TSUP) family of transmembrane proteins. Biochim Biophys Acta (2011) 0.86
The ubiquitous ThrE family of putative transmembrane amino acid efflux transporters. Res Microbiol (2002) 0.85
Biochemical characterization of phosphoryl transfer involving HPr of the phosphoenolpyruvate-dependent phosphotransferase system in Treponema denticola, an organism that lacks PTS permeases. Biochemistry (2005) 0.85
Topological analysis of integral membrane constituents of prokaryotic ABC efflux systems. Res Microbiol (2004) 0.85
Precise excision of IS5 from the intergenic region between the fucPIK and the fucAO operons and mutational control of fucPIK operon expression in Escherichia coli. J Bacteriol (2010) 0.84
Regulation of pho regulon gene expression by the carbon control protein A, CcpA, in Bacillus subtilis. J Mol Microbiol Biotechnol (2005) 0.84
Defense against cannibalism: the SdpI family of bacterial immunity/signal transduction proteins. J Membr Biol (2010) 0.84
Bioinformatic analyses of integral membrane transport proteins encoded within the genome of the planctomycetes species, Rhodopirellula baltica. Biochim Biophys Acta (2013) 0.83
Evolutionary relationships of ATP-Binding Cassette (ABC) uptake porters. BMC Microbiol (2013) 0.83
Identifying relevant data for a biological database: handcrafted rules versus machine learning. IEEE/ACM Trans Comput Biol Bioinform (2011) 0.83
Comparative analyses of transport proteins encoded within the genomes of Mycobacterium tuberculosis and Mycobacterium leprae. Biochim Biophys Acta (2011) 0.83
Reliability of nine programs of topological predictions and their application to integral membrane channel and carrier proteins. J Mol Microbiol Biotechnol (2014) 0.82
Sequence analyses of cyanobacterial bicarbonate transporters and their homologues. J Mol Microbiol Biotechnol (2004) 0.82
Evolutionary appearance of H+-translocating pyrophosphatases. Microbiology (2006) 0.82
Genomic analyses of transport proteins in Ralstonia metallidurans. Comp Funct Genomics (2005) 0.81