Published in J Membr Biol on April 26, 2011
The transporter classification database. Nucleic Acids Res (2013) 2.12
TRIC channels supporting efficient Ca(2+) release from intracellular stores. Pflugers Arch (2012) 0.87
Reliability of nine programs of topological predictions and their application to integral membrane channel and carrier proteins. J Mol Microbiol Biotechnol (2014) 0.82
Crystal structures of the TRIC trimeric intracellular cation channel orthologues. Cell Res (2016) 0.76
Comparative analyses of transport proteins encoded within the genomes of Leptospira species. Microb Pathog (2016) 0.76
Comparative genomic analyses of transport proteins encoded within the genomes of Leptospira species. Microb Pathog (2015) 0.75
Ion- and water-binding sites inside an occluded hourglass pore of a trimeric intracellular cation (TRIC) channel. BMC Biol (2017) 0.75
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res (1997) 665.31
A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res (1984) 181.98
The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res (1997) 175.36
Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J Mol Biol (2001) 66.87
The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes. Nucleic Acids Res (2005) 29.61
Similar amino acid sequences: chance or common ancestry? Science (1981) 28.87
The HMMTOP transmembrane topology prediction server. Bioinformatics (2001) 12.57
Membrane protein structure prediction. Hydrophobicity analysis and the positive-inside rule. J Mol Biol (1992) 11.97
Crystal structures explain functional properties of two E. coli porins. Nature (1992) 10.38
Principles governing amino acid composition of integral membrane proteins: application to topology prediction. J Mol Biol (1998) 7.72
The value of prior knowledge in discovering motifs with MEME. Proc Int Conf Intell Syst Mol Biol (1995) 7.31
Ryanodine receptor/Ca2+ release channels and their regulation by endogenous effectors. Annu Rev Physiol (1994) 5.79
A probabilistic model of local sequence alignment that simplifies statistical significance estimation. PLoS Comput Biol (2008) 5.12
Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features. Proc Natl Acad Sci U S A (2006) 4.52
The Transporter Classification Database: recent advances. Nucleic Acids Res (2008) 4.26
Interpreting the universal phylogenetic tree. Proc Natl Acad Sci U S A (2000) 4.09
Evolutionary origins of genomic repertoires in bacteria. PLoS Biol (2005) 3.43
Mitochondrial genome evolution and the origin of eukaryotes. Annu Rev Genet (1999) 3.33
Computer-aided analyses of transport protein sequences: gleaning evidence concerning function, structure, biogenesis, and evolution. Microbiol Rev (1994) 3.12
Control of calcium release in functioning skeletal muscle fibers. Annu Rev Physiol (1994) 2.91
The mechanical hypothesis of excitation-contraction (EC) coupling in skeletal muscle. J Muscle Res Cell Motil (1991) 2.09
Tracing pathways of transport protein evolution. Mol Microbiol (2003) 2.09
Embryonic lethality and abnormal cardiac myocytes in mice lacking ryanodine receptor type 2. EMBO J (1998) 1.88
Topological rules for membrane protein assembly in eukaryotic cells. J Biol Chem (1997) 1.83
TRIC channels are essential for Ca2+ handling in intracellular stores. Nature (2007) 1.58
Ca2+-movements in muscle modulated by the state of K+-channels in the sarcoplasmic reticulum membranes. Pflugers Arch (1987) 1.56
Charge movement and the nature of signal transduction in skeletal muscle excitation-contraction coupling. Annu Rev Physiol (1992) 1.52
Decamethonium and hexamethonium block K+ channels of sarcoplasmic reticulum. Nature (1980) 1.51
A web-based program (WHAT) for the simultaneous prediction of hydropathy, amphipathicity, secondary structure and transmembrane topology for a single protein sequence. J Mol Microbiol Biotechnol (2001) 1.41
Ion channels versus ion pumps: the principal difference, in principle. Nat Rev Mol Cell Biol (2009) 1.37
A web-based Tree View (TV) program for the visualization of phylogenetic trees. J Mol Microbiol Biotechnol (2002) 1.37
A web-based program for the prediction of average hydropathy, average amphipathicity and average similarity of multiply aligned homologous proteins. J Mol Microbiol Biotechnol (2001) 1.35
Immuno-proteomic approach to excitation--contraction coupling in skeletal and cardiac muscle: molecular insights revealed by the mitsugumins. Cell Calcium (2007) 1.24
A simple sensitive program for detecting internal repeats in sets of multiply aligned homologous proteins. J Mol Microbiol Biotechnol (2002) 1.24
Bioinformatic analyses of transmembrane transport: novel software for deducing protein phylogeny, topology, and evolution. J Mol Microbiol Biotechnol (2009) 1.21
Horizontal gene transfer: perspectives at a crossroads of scientific disciplines. Nat Rev Microbiol (2005) 1.19
Membrane porters of ATP-binding cassette transport systems are polyphyletic. J Membr Biol (2009) 1.14
The p-type ATPase superfamily. J Mol Microbiol Biotechnol (2010) 1.09
Homologues of archaeal rhodopsins in plants, animals and fungi: structural and functional predications for a putative fungal chaperone protein. Biochim Biophys Acta (2001) 1.04
Size comparisons among integral membrane transport protein homologues in bacteria, Archaea, and Eucarya. J Bacteriol (2001) 1.04
Essential role of the TRIC-B channel in Ca2+ handling of alveolar epithelial cells and in perinatal lung maturation. Development (2009) 1.00
Visualization of the trimeric P2X2 receptor with a crown-capped extracellular domain. Biochem Biophys Res Commun (2005) 1.00
Charade of the SR K+-channel: two ion-channels, TRIC-A and TRIC-B, masquerade as a single K+-channel. Biophys J (2010) 0.99
Ca2+ overload and sarcoplasmic reticulum instability in tric-a null skeletal muscle. J Biol Chem (2010) 0.95
Complex histories of genes encoding 3-hydroxy-3-methylglutaryl-CoenzymeA reductase. Mol Biol Evol (2005) 0.84
Phylogenetic relationships among bacteriorhodopsins. Res Microbiol (1994) 0.82
Evolutionary appearance of H+-translocating pyrophosphatases. Microbiology (2006) 0.82
[Physiological functions of TRIC channels]. Seikagaku (2009) 0.76
The transporter classification (TC) system, 2002. Crit Rev Biochem Mol Biol (2002) 2.56
Combinatorial transcriptional control of the lactose operon of Escherichia coli. Proc Natl Acad Sci U S A (2007) 2.51
Type II protein secretion and its relationship to bacterial type IV pili and archaeal flagella. Microbiology (2003) 2.48
Comparative genomic analyses of the bacterial phosphotransferase system. Microbiol Mol Biol Rev (2005) 2.26
Transcriptome analysis of Crp-dependent catabolite control of gene expression in Escherichia coli. J Bacteriol (2004) 2.20
Two families of mechanosensitive channel proteins. Microbiol Mol Biol Rev (2003) 2.12
Phylogeny as a guide to structure and function of membrane transport proteins. Mol Membr Biol (2004) 2.07
Protein-translocating outer membrane porins of Gram-negative bacteria. Biochim Biophys Acta (2002) 1.83
The multidrug/oligosaccharidyl-lipid/polysaccharide (MOP) exporter superfamily. Eur J Biochem (2003) 1.76
The major facilitator superfamily (MFS) revisited. FEBS J (2012) 1.72
A genomic analysis of the archaeal system Ignicoccus hospitalis-Nanoarchaeum equitans. Genome Biol (2008) 1.60
Functional interactions between the carbon and iron utilization regulators, Crp and Fur, in Escherichia coli. J Bacteriol (2005) 1.54
Gap junctional proteins of animals: the innexin/pannexin superfamily. Prog Biophys Mol Biol (2007) 1.41
The beta-barrel finder (BBF) program, allowing identification of outer membrane beta-barrel proteins encoded within prokaryotic genomes. Protein Sci (2002) 1.38
A web-based Tree View (TV) program for the visualization of phylogenetic trees. J Mol Microbiol Biotechnol (2002) 1.37
The ascorbate transporter of Escherichia coli. J Bacteriol (2003) 1.36
The ion transporter superfamily. Biochim Biophys Acta (2003) 1.36
The general protein secretory pathway: phylogenetic analyses leading to evolutionary conclusions. Biochim Biophys Acta (2003) 1.34
The IUBMB-endorsed transporter classification system. Mol Biotechnol (2004) 1.32
Sequence and phylogenetic analyses of the twin-arginine targeting (Tat) protein export system. Arch Microbiol (2002) 1.30
The principal chloroquine resistance protein of Plasmodium falciparum is a member of the drug/metabolite transporter superfamily. Microbiology (2004) 1.29
A simple sensitive program for detecting internal repeats in sets of multiply aligned homologous proteins. J Mol Microbiol Biotechnol (2002) 1.24
Bioinformatic analyses of transmembrane transport: novel software for deducing protein phylogeny, topology, and evolution. J Mol Microbiol Biotechnol (2009) 1.21
Catabolite repression and activation in Bacillus subtilis: dependency on CcpA, HPr, and HprK. J Bacteriol (2005) 1.20
The amino acid-polyamine-organocation superfamily. J Mol Microbiol Biotechnol (2012) 1.20
Extra domains in secondary transport carriers and channel proteins. Biochim Biophys Acta (2006) 1.17
Transport capabilities of eleven gram-positive bacteria: comparative genomic analyses. Biochim Biophys Acta (2007) 1.14
Membrane porters of ATP-binding cassette transport systems are polyphyletic. J Membr Biol (2009) 1.14
A transporter of Escherichia coli specific for L- and D-methionine is the prototype for a new family within the ABC superfamily. Arch Microbiol (2003) 1.14
In silico and transcriptional analysis of carbohydrate uptake systems of Streptomyces coelicolor A3(2). J Bacteriol (2004) 1.14
Web-based programs for the display and analysis of transmembrane alpha-helices in aligned protein sequences. J Mol Microbiol Biotechnol (2003) 1.13
The tripartite tricarboxylate transporter (TTT) family. Res Microbiol (2003) 1.13
Ser/Thr/Tyr protein phosphorylation in bacteria - for long time neglected, now well established. J Mol Microbiol Biotechnol (2005) 1.13
Overexpression of the Escherichia coli sugE gene confers resistance to a narrow range of quaternary ammonium compounds. J Bacteriol (2002) 1.11
Protein secretion systems of Pseudomonas aeruginosa and P fluorescens. Biochim Biophys Acta (2003) 1.10
The p-type ATPase superfamily. J Mol Microbiol Biotechnol (2010) 1.09
The bile/arsenite/riboflavin transporter (BART) superfamily. FEBS J (2007) 1.07
Phylogenetic characterization of transport protein superfamilies: superiority of SuperfamilyTree programs over those based on multiple alignments. J Mol Microbiol Biotechnol (2012) 1.06
Biofilm-defective mutants of Bacillus subtilis. J Mol Microbiol Biotechnol (2004) 1.05
Multidrug resistance: phylogenetic characterization of superfamilies of secondary carriers that include drug exporters. Methods Mol Biol (2010) 1.05
Phylogeny of phosphoryl transfer proteins of the phosphoenolpyruvate-dependent sugar-transporting phosphotransferase system. Res Microbiol (2002) 1.05
Regulation of sigL expression by the catabolite control protein CcpA involves a roadblock mechanism in Bacillus subtilis: potential connection between carbon and nitrogen metabolism. J Bacteriol (2005) 1.04
Evolutionary origins of members of a superfamily of integral membrane cytochrome c biogenesis proteins. Biochim Biophys Acta (2007) 1.03
Lysophospholipid flipping across the Escherichia coli inner membrane catalyzed by a transporter (LplT) belonging to the major facilitator superfamily. J Biol Chem (2005) 1.03
Reversing transmembrane electron flow: the DsbD and DsbB protein families. J Mol Microbiol Biotechnol (2003) 1.03
The IUBMB-endorsed transporter classification system. Methods Mol Biol (2003) 1.03
BioV Suite--a collection of programs for the study of transport protein evolution. FEBS J (2012) 1.03
Bioinformatic characterization of p-type ATPases encoded within the fully sequenced genomes of 26 eukaryotes. J Membr Biol (2009) 1.01
Molecular modeling of the bacterial outer membrane receptor energizer, ExbBD/TonB, based on homology with the flagellar motor, MotAB. Biochim Biophys Acta (2003) 0.99
Domain analysis of transcriptional regulators bearing PTS regulatory domains. Res Microbiol (2002) 0.99
Evolutionary relationship between 5+5 and 7+7 inverted repeat folds within the amino acid-polyamine-organocation superfamily. Proteins (2013) 0.98
Education for Humanity. Water Air Soil Pollut (2009) 0.98
A novel mechanism of transposon-mediated gene activation. PLoS Genet (2009) 0.96
Bioinformatic analyses of the bacterial L-ascorbate phosphotransferase system permease family. J Mol Microbiol Biotechnol (2003) 0.95
The phagosomal nutrient transporter (Pht) family. Microbiology (2008) 0.95
The urea transporter (UT) family: bioinformatic analyses leading to structural, functional, and evolutionary predictions. Receptors Channels (2003) 0.95
Carbonic anhydrases fused to anion transporters of the SulP family: evidence for a novel type of bicarbonate transporter. J Mol Microbiol Biotechnol (2004) 0.95
A mechanism of transposon-mediated directed mutation. Mol Microbiol (2009) 0.94
Sequence similarity between the channel-forming domains of voltage-gated ion channel proteins and the C-terminal domains of secondary carriers of the major facilitator superfamily. Microbiology (2002) 0.94
Topological predictions for integral membrane permeases of the phosphoenolpyruvate:sugar phosphotransferase system. J Mol Microbiol Biotechnol (2006) 0.94
Protein-translocating trimeric autotransporters of gram-negative bacteria. J Bacteriol (2006) 0.94
The copper transporter (Ctr) family of Cu+ uptake systems. J Mol Microbiol Biotechnol (2006) 0.94
Evolution of the oligopeptide transporter family. J Membr Biol (2011) 0.93
In vitro phosphorylation of key metabolic enzymes from Bacillus subtilis: PrkC phosphorylates enzymes from different branches of basic metabolism. J Mol Microbiol Biotechnol (2010) 0.93
Regulation of carbon utilization by sulfur availability in Escherichia coli and Salmonella typhimurium. Microbiology (2002) 0.93
Animal Ca2+ release-activated Ca2+ (CRAC) channels appear to be homologous to and derived from the ubiquitous cation diffusion facilitators. BMC Res Notes (2010) 0.92
The bacterial intimins and invasins: a large and novel family of secreted proteins. PLoS One (2010) 0.92
Functional Promiscuity of Homologues of the Bacterial ArsA ATPases. Int J Microbiol (2010) 0.91
Comparative genomics of metabolic capacities of regulons controlled by cis-regulatory RNA motifs in bacteria. BMC Genomics (2013) 0.91
Transposon-mediated adaptive and directed mutations and their potential evolutionary benefits. J Mol Microbiol Biotechnol (2012) 0.91
Sec61beta--a component of the archaeal protein secretory system. Trends Biochem Sci (2002) 0.90
Topological and phylogenetic analyses of bacterial holin families and superfamilies. Biochim Biophys Acta (2013) 0.90
A stochastic automaton shows how enzyme assemblies may contribute to metabolic efficiency. BMC Syst Biol (2008) 0.90
Pathways of transport protein evolution: recent advances. Biol Chem (2011) 0.89
Functional characterization of the heterooligomeric EbrAB multidrug efflux transporter of Bacillus subtilis. Biochemistry (2007) 0.88
The transporter-opsin-G protein-coupled receptor (TOG) superfamily. FEBS J (2013) 0.88
Sequence similarity between multidrug resistance efflux pumps of the ABC and RND superfamilies. Microbiology (2004) 0.88
Regulation of crp gene expression by the catabolite repressor/activator, Cra, in Escherichia coli. J Mol Microbiol Biotechnol (2014) 0.87
Comprehensive analysis of transport proteins encoded within the genome of Bdellovibrio bacteriovorus. Genomics (2007) 0.87
Expansion of the APC superfamily of secondary carriers. Proteins (2014) 0.87
The iron/lead transporter superfamily of Fe/Pb2+ uptake systems. J Mol Microbiol Biotechnol (2006) 0.86
Bioinformatic characterization of the 4-Toluene Sulfonate Uptake Permease (TSUP) family of transmembrane proteins. Biochim Biophys Acta (2011) 0.86
The ubiquitous ThrE family of putative transmembrane amino acid efflux transporters. Res Microbiol (2002) 0.85
Biochemical characterization of phosphoryl transfer involving HPr of the phosphoenolpyruvate-dependent phosphotransferase system in Treponema denticola, an organism that lacks PTS permeases. Biochemistry (2005) 0.85
Topological analysis of integral membrane constituents of prokaryotic ABC efflux systems. Res Microbiol (2004) 0.85
Precise excision of IS5 from the intergenic region between the fucPIK and the fucAO operons and mutational control of fucPIK operon expression in Escherichia coli. J Bacteriol (2010) 0.84
Regulation of pho regulon gene expression by the carbon control protein A, CcpA, in Bacillus subtilis. J Mol Microbiol Biotechnol (2005) 0.84
Defense against cannibalism: the SdpI family of bacterial immunity/signal transduction proteins. J Membr Biol (2010) 0.84
Bioinformatic analyses of integral membrane transport proteins encoded within the genome of the planctomycetes species, Rhodopirellula baltica. Biochim Biophys Acta (2013) 0.83
Comparative analyses of transport proteins encoded within the genomes of Mycobacterium tuberculosis and Mycobacterium leprae. Biochim Biophys Acta (2011) 0.83
Identifying relevant data for a biological database: handcrafted rules versus machine learning. IEEE/ACM Trans Comput Biol Bioinform (2011) 0.83
Evolutionary relationships of ATP-Binding Cassette (ABC) uptake porters. BMC Microbiol (2013) 0.83
Reliability of nine programs of topological predictions and their application to integral membrane channel and carrier proteins. J Mol Microbiol Biotechnol (2014) 0.82
Sequence analyses of cyanobacterial bicarbonate transporters and their homologues. J Mol Microbiol Biotechnol (2004) 0.82
Evolutionary appearance of H+-translocating pyrophosphatases. Microbiology (2006) 0.82
Genomic analyses of transport proteins in Ralstonia metallidurans. Comp Funct Genomics (2005) 0.81
Active transport in communication, protection and nutrition. J Mol Microbiol Biotechnol (2007) 0.81
Identification of the L-aspartate transporter in Bacillus subtilis. J Bacteriol (2003) 0.81
Characterization of the E. coli glucose permease fused to the maltose-binding protein. J Basic Microbiol (2008) 0.81