Mechanisms of transcription-coupled DNA repair.

Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs. Genome Res (2007) 7.34

Whole-genome sequencing in autism identifies hot spots for de novo germline mutation. Cell (2012) 4.03

Chromatin-associated periodicity in genetic variation downstream of transcriptional start sites. Science (2008) 3.10

Antiapoptotic function of RNA-binding protein HuR effected through prothymosin alpha. EMBO J (2005) 2.33

Remodeling of DNA replication structures by the branch point translocase FANCM. Proc Natl Acad Sci U S A (2008) 2.20

Compositional gradients in Gramineae genes. Genome Res (2002) 2.04

Transcription-coupled nucleotide excision repair factors promote R-loop-induced genome instability. Mol Cell (2014) 1.95

Inhibition of transcription by platinum antitumor compounds. Metallomics (2009) 1.88

Local action of the chromatin assembly factor CAF-1 at sites of nucleotide excision repair in vivo. EMBO J (2003) 1.85

Genome-wide mRNA surveillance is coupled to mRNA export. Genes Dev (2004) 1.83

Crystal structure of a DNA decamer containing a cis-syn thymine dimer. Proc Natl Acad Sci U S A (2002) 1.82

CSA-dependent degradation of CSB by the ubiquitin-proteasome pathway establishes a link between complementation factors of the Cockayne syndrome. Genes Dev (2006) 1.79

A ubiquitin-binding domain in Cockayne syndrome B required for transcription-coupled nucleotide excision repair. Mol Cell (2010) 1.79

von Hippel-Lindau protein binds hyperphosphorylated large subunit of RNA polymerase II through a proline hydroxylation motif and targets it for ubiquitination. Proc Natl Acad Sci U S A (2003) 1.78

Xeroderma pigmentosum complementation group E and UV-damaged DNA-binding protein. DNA Repair (Amst) (2002) 1.73

Coordination of dual incision and repair synthesis in human nucleotide excision repair. EMBO J (2009) 1.68

The genomic landscape shaped by selection on transposable elements across 18 mouse strains. Genome Biol (2012) 1.63

Ddb1 controls genome stability and meiosis in fission yeast. Genes Dev (2005) 1.63

Transcription-induced CAG repeat contraction in human cells is mediated in part by transcription-coupled nucleotide excision repair. Mol Cell Biol (2007) 1.61

Chromosomal protein HMGN1 enhances the rate of DNA repair in chromatin. EMBO J (2003) 1.59

BRCA1/BARD1 inhibition of mRNA 3' processing involves targeted degradation of RNA polymerase II. Genes Dev (2005) 1.57

Identification of factors influencing strand bias in oligonucleotide-mediated recombination in Escherichia coli. Nucleic Acids Res (2003) 1.56

DNA repair deficiency in neurodegeneration. Prog Neurobiol (2011) 1.55

Cockayne syndrome group B cellular and biochemical functions. Am J Hum Genet (2003) 1.46

RNA landscape of evolution for optimal exon and intron discrimination. Proc Natl Acad Sci U S A (2008) 1.45

Transcription induces strand-specific mutations at the 5' end of human genes. Genome Res (2008) 1.41

Global mRNA stabilization preferentially linked to translational repression during the endoplasmic reticulum stress response. Mol Cell Biol (2004) 1.38

Transcription-coupled and splicing-coupled strand asymmetries in eukaryotic genomes. Nucleic Acids Res (2004) 1.38

Rpb4 and Rpb9 mediate subpathways of transcription-coupled DNA repair in Saccharomyces cerevisiae. EMBO J (2002) 1.36

Mammalian transcription-coupled excision repair. Cold Spring Harb Perspect Biol (2013) 1.32

Transcription destabilizes triplet repeats. Mol Carcinog (2009) 1.31

Cooperation of the Cockayne syndrome group B protein and poly(ADP-ribose) polymerase 1 in the response to oxidative stress. Mol Cell Biol (2005) 1.31

RNA polymerase II collision interrupts convergent transcription. Mol Cell (2012) 1.28

H2A.Z functions to regulate progression through the cell cycle. Mol Cell Biol (2006) 1.27

GC-compositional strand bias around transcription start sites in plants and fungi. BMC Genomics (2005) 1.25

Preferential repair of oxidized base damage in the transcribed genes of mammalian cells. J Biol Chem (2010) 1.22

A DNA translocation motif in the bacterial transcription--repair coupling factor, Mfd. Nucleic Acids Res (2003) 1.21

Genomic evidence for elevated mutation rates in highly expressed genes. EMBO Rep (2012) 1.19

The single-strand DNA binding activity of human PC4 prevents mutagenesis and killing by oxidative DNA damage. Mol Cell Biol (2004) 1.19

Different effects of CSA and CSB deficiency on sensitivity to oxidative DNA damage. Mol Cell Biol (2004) 1.17

Conformational changes of a Swi2/Snf2 ATPase during its mechano-chemical cycle. Nucleic Acids Res (2008) 1.14

Genomic regionality in rates of evolution is not explained by clustering of genes of comparable expression profile. Genome Res (2004) 1.14

The intertwined roles of transcription and repair proteins. Mol Cell (2013) 1.13

Genome-wide analysis of factors affecting transcription elongation and DNA repair: a new role for PAF and Ccr4-not in transcription-coupled repair. PLoS Genet (2009) 1.13

Xpa deficiency reduces CAG trinucleotide repeat instability in neuronal tissues in a mouse model of SCA1. Hum Mol Genet (2011) 1.12

Roles of Saccharomyces cerevisiae DNA polymerases Poleta and Polzeta in response to irradiation by simulated sunlight. Nucleic Acids Res (2003) 1.09

Silent but not static: accelerated base-pair substitution in silenced chromatin of budding yeasts. PLoS Genet (2008) 1.08

Integrating chemical mutagenesis and whole-genome sequencing as a platform for forward and reverse genetic analysis of Chlamydia. Cell Host Microbe (2015) 1.08

The 3' processing factor CstF functions in the DNA repair response. Nucleic Acids Res (2008) 1.07

XPG: its products and biological roles. Adv Exp Med Biol (2008) 1.07

Regulation and rate enhancement during transcription-coupled DNA repair. Mol Cell (2010) 1.07

Regulation of HuR by DNA Damage Response Kinases. J Nucleic Acids (2010) 1.06

DDB2 complex-mediated ubiquitylation around DNA damage is oppositely regulated by XPC and Ku and contributes to the recruitment of XPA. Mol Cell Biol (2010) 1.04

Patterns and evolution of nucleotide landscapes in seed plants. Plant Cell (2012) 1.04

The Role of Elongin BC-Containing Ubiquitin Ligases. Front Oncol (2012) 1.04

Deregulation of DNA damage signal transduction by herpesvirus latency-associated M2. J Virol (2006) 1.04

Hot topics in DNA repair: the molecular basis for different disease states caused by mutations in TFIIH and XPG. DNA Repair (Amst) (2008) 1.04

Molecular and cellular dissection of mating-type switching steps in Schizosaccharomyces pombe. Mol Cell Biol (2005) 1.03

Triptolide (TPL) inhibits global transcription by inducing proteasome-dependent degradation of RNA polymerase II (Pol II). PLoS One (2011) 1.02

Substitution rate variation at human CpG sites correlates with non-CpG divergence, methylation level and GC content. Genome Biol (2011) 1.01

Rad26p, a transcription-coupled repair factor, is recruited to the site of DNA lesion in an elongating RNA polymerase II-dependent manner in vivo. Nucleic Acids Res (2009) 1.01

Clusters of transcription-coupled repair in the human genome. Proc Natl Acad Sci U S A (2002) 0.97

Molecular mechanisms of the whole DNA repair system: a comparison of bacterial and eukaryotic systems. J Nucleic Acids (2010) 0.96

A new connection of mRNP biogenesis and export with transcription-coupled repair. Nucleic Acids Res (2007) 0.96

UV wavelength-dependent regulation of transcription-coupled nucleotide excision repair in p53-deficient human cells. Proc Natl Acad Sci U S A (2003) 0.96

Dynamic relocalization of hOGG1 during the cell cycle is disrupted in cells harbouring the hOGG1-Cys326 polymorphic variant. Nucleic Acids Res (2005) 0.95

The transcript-centric mutations in human genomes. Genomics Proteomics Bioinformatics (2012) 0.95

Structure-function studies of the RNA polymerase II elongation complex. Acta Crystallogr D Biol Crystallogr (2009) 0.93

Dissociation of CAK from core TFIIH reveals a functional link between XP-G/CS and the TFIIH disassembly state. PLoS One (2010) 0.93

Cellular concentrations of DDB2 regulate dynamic binding of DDB1 at UV-induced DNA damage. Mol Cell Biol (2008) 0.93

Comparative analysis of topoisomerase IB inhibition and DNA intercalation by flavonoids and similar compounds: structural determinates of activity. Biochem J (2004) 0.92

Mediator links transcription and DNA repair by facilitating Rad2/XPG recruitment. Genes Dev (2013) 0.92

Homologous recombination is involved in transcription-coupled repair of UV damage in Saccharomyces cerevisiae. EMBO J (2005) 0.92

The Chromatin and Transcriptional Landscape of Native Saccharomyces cerevisiae Telomeres and Subtelomeric Domains. Genetics (2015) 0.89

Schizosaccharomyces pombe Ddb1 recruits substrate-specific adaptor proteins through a novel protein motif, the DDB-box. Mol Cell Biol (2008) 0.89

The conserved factor DE-ETIOLATED 1 cooperates with CUL4-DDB1DDB2 to maintain genome integrity upon UV stress. EMBO J (2011) 0.88

Posttranscriptional regulation of gene expression-adding another layer of complexity to the DNA damage response. Front Genet (2012) 0.87

Chlamydomonas reinhardtii: a convenient model system for the study of DNA repair in photoautotrophic eukaryotes. Curr Genet (2007) 0.86

A role for checkpoint kinase-dependent Rad26 phosphorylation in transcription-coupled DNA repair in Saccharomyces cerevisiae. Mol Cell Biol (2009) 0.85

Construction and purification of site-specifically modified DNA templates for transcription assays. Nucleic Acids Res (2003) 0.85

Dysregulation of gene expression as a cause of Cockayne syndrome neurological disease. Proc Natl Acad Sci U S A (2014) 0.85

Distinct properties of hexameric but functionally conserved Mycobacterium tuberculosis transcription-repair coupling factor. PLoS One (2011) 0.85

The evolution of transcription-associated biases of mutations across vertebrates. BMC Evol Biol (2010) 0.84

Arabidopsis cockayne syndrome A-like proteins 1A and 1B form a complex with CULLIN4 and damage DNA binding protein 1A and regulate the response to UV irradiation. Plant Cell (2010) 0.83

Association of purine asymmetry, strand-biased gene distribution and PolC within Firmicutes and beyond: a new appraisal. BMC Genomics (2014) 0.83

RecA-mediated, targeted mutagenesis in zebrafish. Mar Biotechnol (NY) (2003) 0.82

Roles for Gcn5p and Ada2p in transcription and nucleotide excision repair at the Saccharomyces cerevisiae MET16 gene. Nucleic Acids Res (2006) 0.81

Cockayne syndrome: varied requirement of transcription-coupled nucleotide excision repair for the removal of three structurally different adducts from transcribed DNA. PLoS One (2014) 0.81

Transcription of a donor enhances its use during double-strand break-induced gene conversion in human cells. Mol Cell Biol (2006) 0.80

Transcription coupled nucleotide excision repair in Escherichia coli can be affected by changing the arginine at position 529 of the beta subunit of RNA polymerase. DNA Repair (Amst) (2007) 0.80

Protein coevolution and isoexpression in yeast macromolecular complexes. Comp Funct Genomics (2007) 0.80

Global genome removal of thymine glycol in Escherichia coli requires endonuclease III but the persistence of processed repair intermediates rather than thymine glycol correlates with cellular sensitivity to high doses of hydrogen peroxide. Nucleic Acids Res (2002) 0.79

Intronic AT skew is a defendable proxy for germline transcription but does not predict crossing-over or protein evolution rates in Drosophila melanogaster. J Mol Evol (2010) 0.79

CSB-PGBD3 Mutations Cause Premature Ovarian Failure. PLoS Genet (2015) 0.79

Conservation of neutral substitution rate and substitutional asymmetries in mammalian genes. Genome Biol Evol (2010) 0.79

Valosin-containing Protein (VCP)/p97 Segregase Mediates Proteolytic Processing of Cockayne Syndrome Group B (CSB) in Damaged Chromatin. J Biol Chem (2016) 0.79

Assembly of the Elongin A Ubiquitin Ligase Is Regulated by Genotoxic and Other Stresses. J Biol Chem (2015) 0.78

Review of Cisplatin and oxaliplatin in current immunogenic and monoclonal antibody treatments. Oncol Rev (2014) 0.78

UVB induces a genome-wide acting negative regulatory mechanism that operates at the level of transcription initiation in human cells. PLoS Genet (2014) 0.78

Linking the DNA strand asymmetry to the spatio-temporal replication program. I. About the role of the replication fork polarity in genome evolution. Eur Phys J E Soft Matter (2012) 0.77