Published in J Biol Chem on March 08, 2002
Emerging knowledge of regulatory roles of D-amino acids in bacteria. Cell Mol Life Sci (2010) 1.39
Structures of an alanine racemase from Bacillus anthracis (BA0252) in the presence and absence of (R)-1-aminoethylphosphonic acid (L-Ala-P). Acta Crystallogr Sect F Struct Biol Cryst Commun (2008) 1.15
Residues Asp164 and Glu165 at the substrate entryway function potently in substrate orientation of alanine racemase from E. coli: Enzymatic characterization with crystal structure analysis. Protein Sci (2008) 1.02
Structural features and kinetic characterization of alanine racemase from Staphylococcus aureus (Mu50). Acta Crystallogr D Biol Crystallogr (2011) 0.94
The crystal structure of alanine racemase from Streptococcus pneumoniae, a target for structure-based drug design. BMC Microbiol (2011) 0.91
Structural basis for the broad specificity of a new family of amino-acid racemases. Acta Crystallogr D Biol Crystallogr (2013) 0.84
Computational design of thermostabilizing D-amino acid substitutions. J Am Chem Soc (2011) 0.83
Crystal structure of Escherichia coli diaminopropionate ammonia-lyase reveals mechanism of enzyme activation and catalysis. J Biol Chem (2012) 0.82
Peptidoglycan remodeling by the coordinated action of multispecific enzymes. Microb Drug Resist (2014) 0.81
Crystal structure of a zinc-dependent D-serine dehydratase from chicken kidney. J Biol Chem (2011) 0.80
Substituent effects on electrophilic catalysis by the carbonyl group: anatomy of the rate acceleration for PLP-catalyzed deprotonation of glycine. J Am Chem Soc (2011) 0.79
Conserved pyridoxal protein that regulates Ile and Val metabolism. J Bacteriol (2013) 0.78
Structural and biochemical analyses of alanine racemase from the multidrug-resistant Clostridium difficile strain 630. Acta Crystallogr D Biol Crystallogr (2014) 0.78
Structure of alanine racemase from Oenococcus oeni with bound pyridoxal 5'-phosphate. Acta Crystallogr Sect F Struct Biol Cryst Commun (2012) 0.78
Crystal structures of lysine-preferred racemases, the non-antibiotic selectable markers for transgenic plants. PLoS One (2012) 0.78
Treponema denticola cystalysin exhibits significant alanine racemase activity accompanied by transamination: mechanistic implications. Biochem J (2003) 0.77
Mirrors in the PDB: left-handed alpha-turns guide design with D-amino acids. BMC Struct Biol (2009) 0.77
Characterization and preliminary mutation analysis of a thermostable alanine racemase from Thermoanaerobacter tengcongensis MB4. Extremophiles (2013) 0.76
The structure of alanine racemase from Acinetobacter baumannii. Acta Crystallogr F Struct Biol Commun (2014) 0.76
Molecular dynamics simulations of the intramolecular proton transfer and carbanion stabilization in the pyridoxal 5'-phosphate dependent enzymes L-dopa decarboxylase and alanine racemase. Biochim Biophys Acta (2011) 0.76
Mechanistic and Evolutionary Insights from the Reciprocal Promiscuity of Two Pyridoxal Phosphate-dependent Enzymes. J Biol Chem (2016) 0.76
Crystal Structure of a Thermostable Alanine Racemase from Thermoanaerobacter tengcongensis MB4 Reveals the Role of Gln360 in Substrate Selection. PLoS One (2015) 0.75
Structural and Functional Adaptation of Vancomycin Resistance VanT Serine Racemases. MBio (2015) 0.75
Characterization of Lactobacillus salivarius alanine racemase: short-chain carboxylate-activation and the role of A131. Springerplus (2015) 0.75
Intravitreal versus retrobulbar injections of triamcinolone for macular edema associated with branch retinal vein occlusion. Am J Ophthalmol (2005) 2.33
Possible predisposing factors for in-the-bag and out-of-the-bag intraocular lens dislocation and outcomes of intraocular lens exchange surgery. Ophthalmology (2007) 2.13
The PD-1/PD-L1 complex resembles the antigen-binding Fv domains of antibodies and T cell receptors. Proc Natl Acad Sci U S A (2008) 2.03
Postoperative corneal shape changes: microincision versus small-incision coaxial cataract surgery. J Cataract Refract Surg (2009) 1.69
Corneal shape changes after 2.0-mm or 3.0-mm clear corneal versus scleral tunnel incision cataract surgery. Ophthalmology (2010) 1.59
Effect of a capsular tension ring on prevention of intraocular lens decentration and tilt and on anterior capsule contraction after cataract surgery. Jpn J Ophthalmol (2008) 1.58
Intraocular pressure rise after phacoemulsification surgery in glaucoma patients. J Cataract Refract Surg (2004) 1.52
Complexity of the genotype-phenotype correlation in familial exudative vitreoretinopathy with mutations in the LRP5 and/or FZD4 genes. Hum Mutat (2005) 1.51
Thio-modification of yeast cytosolic tRNA requires a ubiquitin-related system that resembles bacterial sulfur transfer systems. J Biol Chem (2008) 1.50
Yeast Nfs1p is involved in thio-modification of both mitochondrial and cytoplasmic tRNAs. J Biol Chem (2004) 1.49
A redox-controlled molecular switch revealed by the crystal structure of a bacterial heme PAS sensor. J Biol Chem (2004) 1.48
Mechanism of beta 1-integrin-mediated hepatoma cell growth involves p27 and S-phase kinase-associated protein 2. Hepatology (2003) 1.45
Stereopsis in bilaterally pseudophakic patients. J Cataract Refract Surg (2004) 1.44
Correlation between posterior capsule opacification and visual function before and after Neodymium: YAG laser posterior capsulotomy. Am J Ophthalmol (2003) 1.43
Effect of a modified optic edge design on visual function: textured-edge versus round-anterior, slope-side edge. J Cataract Refract Surg (2004) 1.41
Screening for the preferred substrate sequence of transglutaminase using a phage-displayed peptide library: identification of peptide substrates for TGASE 2 and Factor XIIIA. J Biol Chem (2006) 1.37
Long-term change in corneal astigmatism after sutureless cataract surgery. Am J Ophthalmol (2011) 1.37
Crystal structure of soybean 11S globulin: glycinin A3B4 homohexamer. Proc Natl Acad Sci U S A (2003) 1.31
Cys-328 of IscS and Cys-63 of IscU are the sites of disulfide bridge formation in a covalently bound IscS/IscU complex: implications for the mechanism of iron-sulfur cluster assembly. Proc Natl Acad Sci U S A (2002) 1.27
Three-dimensional computed tomography for a mediastinal basal pulmonary artery. Ann Thorac Surg (2012) 1.22
A homozygosity-based search for mutations in patients with autosomal recessive retinitis pigmentosa, using microsatellite markers. Invest Ophthalmol Vis Sci (2004) 1.20
New role of flavin as a general acid-base catalyst with no redox function in type 2 isopentenyl-diphosphate isomerase. J Biol Chem (2009) 1.19
Structure and function of a hypothetical Pseudomonas aeruginosa protein PA1167 classified into family PL-7: a novel alginate lyase with a beta-sandwich fold. J Biol Chem (2004) 1.19
Characterization of a NifS-like chloroplast protein from Arabidopsis. Implications for its role in sulfur and selenium metabolism. Plant Physiol (2002) 1.19
Network of protein-protein interactions among iron-sulfur cluster assembly proteins in Escherichia coli. J Biochem (2002) 1.15
A structural basis for depolymerization of alginate by polysaccharide lyase family-7. J Mol Biol (2005) 1.14
Prenatal exposure to bisphenol A up-regulates immune responses, including T helper 1 and T helper 2 responses, in mice. Immunology (2004) 1.14
IscS functions as a primary sulfur-donating enzyme by interacting specifically with MoeB and MoaD in the biosynthesis of molybdopterin in Escherichia coli. J Biol Chem (2009) 1.11
Intraductal papillary growth of liver metastasis originating from colon carcinoma in the bile duct: report of a case. Surg Today (2011) 1.09
Thio modification of yeast cytosolic tRNA is an iron-sulfur protein-dependent pathway. Mol Cell Biol (2007) 1.08
Effect of astigmatism on visual acuity in eyes with a diffractive multifocal intraocular lens. J Cataract Refract Surg (2010) 1.08
Posterior capsule opacification after cataract surgery in patients with diabetes mellitus. Am J Ophthalmol (2002) 1.06
Alterations in D-amino acid concentrations and microbial community structures during the fermentation of red and white wines. J Biosci Bioeng (2010) 1.05
Eicosapentaenoic acid plays a beneficial role in membrane organization and cell division of a cold-adapted bacterium, Shewanella livingstonensis Ac10. J Bacteriol (2008) 1.04
The 2.1-A crystal structure of native neuroserpin reveals unique structural elements that contribute to conformational instability. J Mol Biol (2009) 1.04
Structure of external aldimine of Escherichia coli CsdB, an IscS/NifS homolog: implications for its specificity toward selenocysteine. J Biochem (2002) 1.03
Outcomes of surgery for posterior polar cataract. J Cataract Refract Surg (2003) 1.03
Long-term effect of surface light scattering and glistenings of intraocular lenses on visual function. Am J Ophthalmol (2012) 1.02
Macrophage recognition and phagocytosis of apoptotic fibroblasts is critically dependent on fibroblast-derived thrombospondin 1 and CD36. Am J Pathol (2003) 1.02
Hypothesis: structures, evolution, and ancestor of glucose kinases in the hexokinase family. J Biosci Bioeng (2005) 1.02
Novel mutations in Norrie disease gene in Japanese patients with Norrie disease and familial exudative vitreoretinopathy. Invest Ophthalmol Vis Sci (2007) 1.02
Kinetic and structural studies on the catalytic role of the aspartic acid residue conserved in copper amine oxidase. Biochemistry (2006) 1.01
Mode of action of a germination-specific cortex-lytic enzyme, SleC, of Clostridium perfringens S40. Biosci Biotechnol Biochem (2007) 1.01
Crystallization and preliminary X-ray crystallographic analysis of nicotinic acid mononucleotide adenylyltransferase from Pseudomonas aeruginosa. Acta Crystallogr D Biol Crystallogr (2004) 1.00
Reactions of serine palmitoyltransferase with serine and molecular mechanisms of the actions of serine derivatives as inhibitors. Biochemistry (2004) 1.00
Thrombospondin-1 accelerates wound healing of corneal epithelia. Biochem Biophys Res Commun (2004) 1.00
Recognition mechanism of non-peptide antigens by human gammadelta T cells. Int Immunol (2003) 0.99
Comparison of the stability of 1-piece and 3-piece acrylic intraocular lenses in the lens capsule. J Cataract Refract Surg (2005) 0.99
Crystal structure of AlgQ2, a macromolecule (alginate)-binding protein of Sphingomonas sp. A1, complexed with an alginate tetrasaccharide at 1.6-A resolution. J Biol Chem (2002) 0.99
Substrate recognition by family 7 alginate lyase from Sphingomonas sp. A1. J Mol Biol (2008) 0.98
Effects of bisphenol A on antigen-specific antibody production, proliferative responses of lymphoid cells, and TH1 and TH2 immune responses in mice. Br J Pharmacol (2003) 0.98
Crystal structure of exotype alginate lyase Atu3025 from Agrobacterium tumefaciens. J Biol Chem (2010) 0.98
Construction of a low-temperature protein expression system using a cold-adapted bacterium, Shewanella sp. strain Ac10, as the host. Appl Environ Microbiol (2007) 0.98
Crystal structure of plant ferritin reveals a novel metal binding site that functions as a transit site for metal transfer in ferritin. J Biol Chem (2009) 0.97
Vitamin A up-regulates the expression of thrombospondin-1 and pigment epithelium-derived factor in retinal pigment epithelial cells. Exp Eye Res (2005) 0.97
The iscS gene is essential for the biosynthesis of 2-selenouridine in tRNA and the selenocysteine-containing formate dehydrogenase H. Proc Natl Acad Sci U S A (2002) 0.97
Prediction of missing enzyme genes in a bacterial metabolic network. Reconstruction of the lysine-degradation pathway of Pseudomonas aeruginosa. FEBS J (2007) 0.96
Direct evidence for Sphingomonas sp. A1 periplasmic proteins as macromolecule-binding proteins associated with the ABC transporter: molecular insights into alginate transport in the periplasm. Biochemistry (2005) 0.96
Bacterial cysteine desulfurases: versatile key players in biosynthetic pathways of sulfur-containing biofactors. Appl Microbiol Biotechnol (2011) 0.95
Biochemical evidence supporting the presence of the classical mevalonate pathway in the thermoacidophilic archaeon Sulfolobus solfataricus. J Biochem (2013) 0.95
Conservation and divergence on plant seed 11S globulins based on crystal structures. Biochim Biophys Acta (2010) 0.95
Proteomic studies of an Antarctic cold-adapted bacterium, Shewanella livingstonensis Ac10, for global identification of cold-inducible proteins. Extremophiles (2007) 0.95
A novel zinc-dependent D-serine dehydratase from Saccharomyces cerevisiae. Biochem J (2008) 0.94
Crystal structure of the peptidase domain of Streptococcus ComA, a bifunctional ATP-binding cassette transporter involved in the quorum-sensing pathway. J Biol Chem (2010) 0.94
Bacterial hydrolytic dehalogenases and related enzymes: occurrences, reaction mechanisms, and applications. Chem Rec (2008) 0.94
Crystal structure of a metal ion-bound IS200 transposase. J Biol Chem (2005) 0.94
The implication of YggT of Escherichia coli in osmotic regulation. Biosci Biotechnol Biochem (2009) 0.94
Substrate specificity of streptococcal unsaturated glucuronyl hydrolases for sulfated glycosaminoglycan. J Biol Chem (2009) 0.94
Structure of imidazole glycerol phosphate synthase from Thermus thermophilus HB8: open-closed conformational change and ammonia tunneling. J Biochem (2002) 0.94
Covalent modification of reduced flavin mononucleotide in type-2 isopentenyl diphosphate isomerase by active-site-directed inhibitors. Proc Natl Acad Sci U S A (2011) 0.94
Superchannel of bacteria: biological significance and new horizons. Biosci Biotechnol Biochem (2008) 0.94
Geranylgeranyl reductase involved in the biosynthesis of archaeal membrane lipids in the hyperthermophilic archaeon Archaeoglobus fulgidus. FEBS J (2007) 0.93
Spectroscopic analysis of recombinant rat histidine decarboxylase. J Biochem (2002) 0.93
Crystal structure of unsaturated glucuronyl hydrolase, responsible for the degradation of glycosaminoglycan, from Bacillus sp. GL1 at 1.8 A resolution. J Biol Chem (2004) 0.93
Beta 1-integrin protects hepatoma cells from chemotherapy induced apoptosis via a mitogen-activated protein kinase dependent pathway. Cancer (2002) 0.93
Cold-active esterase from Psychrobacter sp. Ant300: gene cloning, characterization, and the effects of Gly-->Pro substitution near the active site on its catalytic activity and stability. Biochim Biophys Acta (2004) 0.93
Subcellular localization of a germiantion-specific cortex-lytic enzyme, SleB, of Bacilli during sporulation. Genes Genet Syst (2006) 0.93
Crystal structure of the glycosidase family 73 peptidoglycan hydrolase FlgJ. Biochem Biophys Res Commun (2009) 0.93
Crystal structure of family 14 polysaccharide lyase with pH-dependent modes of action. J Biol Chem (2009) 0.93
Increased rigidity of domain structures enhances the stability of a mutant enzyme created by directed evolution. Biochemistry (2003) 0.92
Proteomics-based identification of outer-membrane proteins responsible for import of macromolecules in Sphingomonas sp. A1: alginate-binding flagellin on the cell surface. Biochemistry (2005) 0.92
Sequence and analysis of the 46.6-kb plasmid pA1 from Sphingomonas sp. A1 that corresponds to the typical IncP-1beta plasmid backbone without any accessory gene. Plasmid (2006) 0.92
Molecular identification of unsaturated uronate reductase prerequisite for alginate metabolism in Sphingomonas sp. A1. Biochim Biophys Acta (2010) 0.92
The putative malate/lactate dehydrogenase from Pseudomonas putida is an NADPH-dependent delta1-piperideine-2-carboxylate/delta1-pyrroline-2-carboxylate reductase involved in the catabolism of D-lysine and D-proline. J Biol Chem (2004) 0.92
Proteome Profiling of Vitreoretinal Diseases by Cluster Analysis. Proteomics Clin Appl (2008) 0.91
Expression and characterization of the peptidase domain of Streptococcus pneumoniae ComA, a bifunctional ATP-binding cassette transporter involved in quorum sensing pathway. J Biol Chem (2005) 0.91
Characterization and crystallography of recombinant 7S globulins of Adzuki bean and structure-function relationships with 7S globulins of various crops. J Agric Food Chem (2008) 0.91
Acceleration of the substrate Calpha deprotonation by an analogue of the second substrate palmitoyl-CoA in Serine Palmitoyltransferase. J Biol Chem (2007) 0.91
Crystal structures of branched-chain amino acid aminotransferase complexed with glutamate and glutarate: true reaction intermediate and double substrate recognition of the enzyme. Biochemistry (2003) 0.91
Crystal structures of nonoxidative zinc-dependent 2,6-dihydroxybenzoate (gamma-resorcylate) decarboxylase from Rhizobium sp. strain MTP-10005. J Biol Chem (2006) 0.91
Substrate recognition mechanism of the peptidase domain of the quorum-sensing-signal-producing ABC transporter ComA from Streptococcus. Biochemistry (2008) 0.91
Reaction mechanism and molecular basis for selenium/sulfur discrimination of selenocysteine lyase. J Biol Chem (2010) 0.90
Crystal structure of unsaturated glucuronyl hydrolase complexed with substrate: molecular insights into its catalytic reaction mechanism. J Biol Chem (2006) 0.90