Use of the transposon Ac as a gene-searching engine in the maize genome.

PubWeight™: 1.55‹?› | Rank: Top 4%

🔗 View Article (PMC 150591)

Published in Plant Cell on March 01, 2002

Authors

Matthew Cowperthwaite1, Wonkeun Park, Zhennan Xu, Xianghe Yan, Steven C Maurais, Hugo K Dooner

Author Affiliations

1: Waksman Institute, Rutgers University, Piscataway, New Jersey 08855, USA.

Articles citing this

Intraspecific violation of genetic colinearity and its implications in maize. Proc Natl Acad Sci U S A (2002) 5.85

Recombination rates between adjacent genic and retrotransposon regions in maize vary by 2 orders of magnitude. Proc Natl Acad Sci U S A (2002) 2.69

Discovery of induced point mutations in maize genes by TILLING. BMC Plant Biol (2004) 2.57

The indeterminate gametophyte1 gene of maize encodes a LOB domain protein required for embryo Sac and leaf development. Plant Cell (2007) 1.68

Generation and analysis of end sequence database for T-DNA tagging lines in rice. Plant Physiol (2003) 1.56

Activator mutagenesis of the pink scutellum1/viviparous7 locus of maize. Plant Cell (2003) 1.44

Genome-wide distribution of transposed Dissociation elements in maize. Plant Cell (2010) 1.38

Distribution of Activator (Ac) throughout the maize genome for use in regional mutagenesis. Genetics (2004) 1.20

Ac-immobilized, a stable source of Activator transposase that mediates sporophytic and gametophytic excision of Dissociation elements in maize. Genetics (2005) 1.12

Haplotype structure strongly affects recombination in a maize genetic interval polymorphic for Helitron and retrotransposon insertions. Proc Natl Acad Sci U S A (2009) 1.12

Functional genomics of soybean for improvement of productivity in adverse conditions. Funct Integr Genomics (2010) 1.12

Macrotransposition and other complex chromosomal restructuring in maize by closely linked transposons in direct orientation. Plant Cell (2008) 1.06

Establishment of a soybean (Glycine max Merr. L) transposon-based mutagenesis repository. Planta (2008) 0.96

Transposition of reversed Ac element ends generates novel chimeric genes in maize. PLoS Genet (2006) 0.95

The maize aberrant pollen transmission 1 gene is a SABRE/KIP homolog required for pollen tube growth. Genetics (2005) 0.95

Tnt1 retrotransposon mutagenesis: a tool for soybean functional genomics. Plant Physiol (2012) 0.94

A versatile transposon-based activation tag vector system for functional genomics in cereals and other monocot plants. Plant Physiol (2007) 0.93

Generating novel allelic variation through Activator insertional mutagenesis in maize. Genetics (2006) 0.90

State II dissociation element formation following activator excision in maize. Genetics (2007) 0.89

Cytological visualization of DNA transposons and their transposition pattern in somatic cells of maize. Genetics (2006) 0.89

The complete Ac/Ds transposon family of maize. BMC Genomics (2011) 0.86

POPcorn: An Online Resource Providing Access to Distributed and Diverse Maize Project Data. Int J Plant Genomics (2011) 0.83

Phenotype to genotype using forward-genetic Mu-seq for identification and functional classification of maize mutants. Front Plant Sci (2014) 0.80

Synergy of two reference genomes for the grass family. Plant Physiol (2009) 0.80

TED, an autonomous and rare maize transposon of the mutator superfamily with a high gametophytic excision frequency. Plant Cell (2013) 0.79

Finding the crosswalks on DNA. Proc Natl Acad Sci U S A (2002) 0.78

Mx-rMx, a family of interacting transposons in the growing hAT superfamily of maize. Plant Cell (2005) 0.78

Efficient molecular marker design using the MaizeGDB Mo17 SNPs and Indels track. G3 (Bethesda) (2014) 0.78

The spectrum and frequency of self-inflicted and host gene mutations produced by the transposon Ac in maize. Plant Cell (2012) 0.78

An Ac transposon system based on maize chromosome 4S for isolating long-distance-transposed Ac tags in the maize genome. Genetica (2010) 0.78

InsertionMapper: a pipeline tool for the identification of targeted sequences from multidimensional high throughput sequencing data. BMC Genomics (2013) 0.77

Mutagenesis of barley malting quality QTLs with Ds transposons. Funct Integr Genomics (2011) 0.76

Characterization of an Ac transposon system based on apt1-m1 (Ac) on the long arm of maize chromosome 9. Genetica (2012) 0.75

Articles cited by this

Genomic sequencing. Proc Natl Acad Sci U S A (1984) 92.36

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature (2000) 70.33

Gene mapping with recombinant inbreds in maize. Genetics (1988) 17.53

Nested retrotransposons in the intergenic regions of the maize genome. Science (1996) 12.95

Identification of the genomic locations of duplicate nucleotide sequences in maize by analysis of restriction fragment length polymorphisms. Genetics (1988) 11.26

Exploitation of herbivore-induced plant odors by host-seeking parasitic wasps. Science (1990) 10.98

DNA sequence evidence for the segmental allotetraploid origin of maize. Proc Natl Acad Sci U S A (1997) 7.08

The product of the tobacco mosaic virus resistance gene N: similarity to toll and the interleukin-1 receptor. Cell (1994) 6.88

Patterns of gene action in plant development revealed by enhancer trap and gene trap transposable elements. Genes Dev (1995) 6.08

DNA modification of a maize transposable element correlates with loss of activity. Proc Natl Acad Sci U S A (1986) 5.87

Isolation of the transposable maize controlling elements Ac and Ds. Cell (1983) 5.71

Molecular analysis of the maize anthocyanin regulatory locus C1. Proc Natl Acad Sci U S A (1986) 5.65

Inactivation of the maize transposable element Activator (Ac) is associated with its DNA modification. EMBO J (1987) 4.91

Multiple independent defective suppressor-mutator transposon insertions in Arabidopsis: a tool for functional genomics. Plant Cell (1999) 4.57

Cloning and characterization of the maize An1 gene. Plant Cell (1995) 4.25

Directed tagging of the Arabidopsis FATTY ACID ELONGATION1 (FAE1) gene with the maize transposon activator. Plant Cell (1995) 4.15

Reductase activity encoded by the HM1 disease resistance gene in maize. Science (1992) 3.69

Analysis of flanking sequences from dissociation insertion lines: a database for reverse genetics in Arabidopsis. Plant Cell (1999) 3.65

Colinearity and its exceptions in orthologous adh regions of maize and sorghum. Proc Natl Acad Sci U S A (1999) 3.60

Transposon tagging and molecular analysis of the maize regulatory locus opaque-2. Science (1987) 3.39

Analysis of a chemical plant defense mechanism in grasses. Science (1997) 3.30

Transposition Pattern of the Maize Element Ac from the Bz-M2(ac) Allele. Genetics (1989) 3.14

Visual detection of transposition of the maize element activator (ac) in tobacco seedlings. Science (1989) 3.13

A chromosome replication pattern deduced from pericarp phenotypes resulting from movements of the transposable element, modulator, in maize. Genetics (1984) 3.10

Sequence of three bronze alleles of maize and correlation with the genetic fine structure. Genetics (1988) 3.02

Differential methylation of genes and retrotransposons facilitates shotgun sequencing of the maize genome. Nat Genet (1999) 2.87

Transposition of Ac from the P locus of maize into unreplicated chromosomal sites. Genetics (1987) 2.71

Knock-out mutants from an En-1 mutagenized Arabidopsis thaliana population generate phenylpropanoid biosynthesis phenotypes. Proc Natl Acad Sci U S A (1998) 2.68

Transposon diversity in Arabidopsis thaliana. Proc Natl Acad Sci U S A (2000) 2.57

Active maize genes are unmodified and flanked by diverse classes of modified, highly repetitive DNA. Genome (1994) 2.56

Patterns of chromosomal duplication in maize and their implications for comparative maps of the grasses. Genome Res (2001) 2.50

Marginal fitness contributions of nonessential genes in yeast. Proc Natl Acad Sci U S A (1998) 2.31

ADP-glucose pyrophosphorylase in shrunken-2 and brittle-2 mutants of maize. Mol Gen Genet (1994) 2.22

Transpositions of Modulator, a Component of the Variegated Pericarp Allele in Maize. Genetics (1959) 2.20

Functional genomics: probing plant gene function and expression with transposons. Proc Natl Acad Sci U S A (1998) 2.08

Genetic characterization of the Mutator system in maize: behavior and regulation of Mu transposons in a minimal line. Genetics (1995) 1.98

Survey of transposable elements from rice genomic sequences. Plant J (2001) 1.92

The highly recombinogenic bz locus lies in an unusually gene-rich region of the maize genome. Proc Natl Acad Sci U S A (2001) 1.88

Mutator insertions in an intron of the maize knotted1 gene result in dominant suppressible mutations. Genetics (1994) 1.84

Site-selected transposon mutagenesis at the hcf106 locus in maize. Plant Cell (1995) 1.84

Recent, extensive, and preferential insertion of members of the miniature inverted-repeat transposable element family Heartbreaker into genic regions of maize. Proc Natl Acad Sci U S A (2000) 1.84

A single genetic unit specifies two transposition functions in the maize element activator. Science (1986) 1.81

Phenotypic diversity mediated by the maize transposable elements Ac and Spm. Science (1988) 1.78

A two-component enhancer-inhibitor transposon mutagenesis system for functional analysis of the Arabidopsis genome. Plant Cell (1999) 1.76

A transposon insertion in the Arabidopsis SSR16 gene causes an embryo-defective lethal mutation. Plant J (1996) 1.76

A maize sesquiterpene cyclase gene induced by insect herbivory and volicitin: characterization of wild-type and mutant alleles. Proc Natl Acad Sci U S A (2000) 1.63

Unmethylated CpG islands associated with genes in higher plant DNA. EMBO J (1988) 1.61

The maize auxotrophic mutant orange pericarp is defective in duplicate genes for tryptophan synthase beta. Plant Cell (1992) 1.55

The Mutator transposable element system of maize. Curr Top Microbiol Immunol (1996) 1.51

The bz-rcy allele of the Cy transposable element system of Zea mays contains a Mu-like element insertion. Mol Gen Genet (1989) 1.46

The gene distribution of the maize genome. Proc Natl Acad Sci U S A (1995) 1.42

Amplification of genomic sequences flanking transposable elements in host and heterologous plants: a tool for transposon tagging and genome characterization. Nucleic Acids Res (1990) 1.31

Transposon tagging of the maize Glossy2 locus with the transposable element En/Spm. Plant J (1995) 1.29

Molecular analysis of rice plants harboring an Ac/Ds transposable element-mediated gene trapping system. Plant J (1999) 1.19

Distribution of unlinked receptor sites for transposed Ac elements from the bz-m2(Ac) allele in maize. Genetics (1994) 1.14

Regional insertional mutagenesis of genes on Arabidopsis thaliana chromosome V using the Ac/Ds transposon in combination with a cDNA scanning method. Plant J (1999) 1.08

Ac as a tool for the functional genomics of rice. Plant J (1999) 0.95

Regional insertional mutagenesis on chromosome III of Arabidopsis thaliana using the maize Ac element. Plant J (1998) 0.94

A maize cryptic Ac-homologous sequence derived from an Activator transposable element does not transpose. Mol Gen Genet (1992) 0.87

Insertion mutations at the maize Opaque2 locus induced by transposable element families Ac, En/Spm and Bg. Mol Gen Genet (1995) 0.82

Articles by these authors

A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome. Science (2002) 9.59

Intraspecific violation of genetic colinearity and its implications in maize. Proc Natl Acad Sci U S A (2002) 5.85

Gene movement by Helitron transposons contributes to the haplotype variability of maize. Proc Natl Acad Sci U S A (2005) 3.13

Recombination rates between adjacent genic and retrotransposon regions in maize vary by 2 orders of magnitude. Proc Natl Acad Sci U S A (2002) 2.69

Remarkable variation in maize genome structure inferred from haplotype diversity at the bz locus. Proc Natl Acad Sci U S A (2006) 2.20

Organization and variability of the maize genome. Curr Opin Plant Biol (2006) 1.98

The polychromatic Helitron landscape of the maize genome. Proc Natl Acad Sci U S A (2009) 1.37

Detection by multiplex real-time polymerase chain reaction assays and isolation of Shiga toxin-producing Escherichia coli serogroups O26, O45, O103, O111, O121, and O145 in ground beef. Foodborne Pathog Dis (2011) 1.27

Computational prediction and molecular confirmation of Helitron transposons in the maize genome. BMC Genomics (2008) 1.19

Haplotype structure strongly affects recombination in a maize genetic interval polymorphic for Helitron and retrotransposon insertions. Proc Natl Acad Sci U S A (2009) 1.12

Jittery, a Mutator distant relative with a paradoxical mobile behavior: excision without reinsertion. Plant Cell (2004) 1.07

Macrotransposition and other complex chromosomal restructuring in maize by closely linked transposons in direct orientation. Plant Cell (2008) 1.06

Eavesdropping by bacteria: the role of SdiA in Escherichia coli and Salmonella enterica serovar Typhimurium quorum sensing. Foodborne Pathog Dis (2010) 0.97

A mutation in the nuclear-encoded plastid ribosomal protein S9 leads to early embryo lethality in maize. Plant J (2004) 0.96

Excision of Helitron transposons in maize. Genetics (2009) 0.95

The maize aberrant pollen transmission 1 gene is a SABRE/KIP homolog required for pollen tube growth. Genetics (2005) 0.95

Experimental evidence for UNC-6 (netrin) axon guidance by stochastic fluctuations of intracellular UNC-40 (DCC) outgrowth activity. Biol Open (2013) 0.92

Genome sequencing and comparative genomics of honey bee microsporidia, Nosema apis reveal novel insights into host-parasite interactions. BMC Genomics (2013) 0.89

Escherichia coli serogroup O2 and O28ac O-antigen gene cluster sequences and detection of pathogenic E. coli O2 and O28ac by PCR. Can J Microbiol (2010) 0.87

Characterization of the monoterpene synthase gene tps26, the ortholog of a gene induced by insect herbivory in maize. Plant Physiol (2008) 0.86

The maize high-lysine mutant opaque7 is defective in an acyl-CoA synthetase-like protein. Genetics (2011) 0.86

The complete Ac/Ds transposon family of maize. BMC Genomics (2011) 0.86

Novel natural food antimicrobials. Annu Rev Food Sci Technol (2012) 0.85

Gene tagging with engineered Ds elements in maize. Methods Mol Biol (2013) 0.84

Differential gene expression of E. coli O157:H7 in ground beef extract compared to tryptic soy broth. J Food Sci (2011) 0.84

RNA-Seq transcriptome profiling of upland cotton (Gossypium hirsutum L.) root tissue under water-deficit stress. PLoS One (2013) 0.83

TED, an autonomous and rare maize transposon of the mutator superfamily with a high gametophytic excision frequency. Plant Cell (2013) 0.79

The complete DNA sequence and analysis of the virulence plasmid and of five additional plasmids carried by Shiga toxin-producing Escherichia coli O26:H11 strain H30. Int J Med Microbiol (2011) 0.79

Correction: Comparison of O-Antigen Gene Clusters of All O-Serogroups of Escherichia coli and Proposal for Adopting a New Nomenclature for O-Typing. PLoS One (2016) 0.79

The spectrum and frequency of self-inflicted and host gene mutations produced by the transposon Ac in maize. Plant Cell (2012) 0.78

Dynamic evolution of bz orthologous regions in the Andropogoneae and other grasses. Plant J (2012) 0.78

Mx-rMx, a family of interacting transposons in the growing hAT superfamily of maize. Plant Cell (2005) 0.78

BS-KNN: An Effective Algorithm for Predicting Protein Subchloroplast Localization. Evol Bioinform Online (2012) 0.78

InsertionMapper: a pipeline tool for the identification of targeted sequences from multidimensional high throughput sequencing data. BMC Genomics (2013) 0.77

Variation in allelic expression associated with a recombination hotspot in Zea mays. Plant J (2014) 0.76

Simultaneous dual-color light sheet fluorescence imaging flow cytometry for high-throughput marine phytoplankton analysis. Opt Express (2017) 0.75

Visualizing bz1 missense suppression in Zea mays: an assay for monocot tRNA expression and utilization. Plant Mol Biol (2006) 0.75

Inactivation of Salmonella enterica on tomato stem scars by antimicrobial solutions and vacuum perfusion. Int J Food Microbiol (2012) 0.75

Simultaneous dual-color light sheet fluorescence imaging flow cytometry for high-throughput marine phytoplankton analysis: retraction. Opt Express (2017) 0.75