Published in Proc Natl Acad Sci U S A on November 13, 2006
Maize inbreds exhibit high levels of copy number variation (CNV) and presence/absence variation (PAV) in genome content. PLoS Genet (2009) 3.88
Pervasive gene content variation and copy number variation in maize and its undomesticated progenitor. Genome Res (2010) 2.71
A single molecule scaffold for the maize genome. PLoS Genet (2009) 2.33
Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. PLoS Genet (2009) 1.83
Transposable elements contribute to activation of maize genes in response to abiotic stress. PLoS Genet (2015) 1.72
Aluminum tolerance in maize is associated with higher MATE1 gene copy number. Proc Natl Acad Sci U S A (2013) 1.63
Distribution, diversity, evolution, and survival of Helitrons in the maize genome. Proc Natl Acad Sci U S A (2009) 1.60
Maize genome structure variation: interplay between retrotransposon polymorphisms and genic recombination. Plant Cell (2008) 1.51
Active transposition in genomes. Annu Rev Genet (2012) 1.51
Genome size and transposable element content as determined by high-throughput sequencing in maize and Zea luxurians. Genome Biol Evol (2011) 1.43
Allele-specific expression patterns reveal biases and embryo-specific parent-of-origin effects in hybrid maize. Plant Cell (2007) 1.39
The polychromatic Helitron landscape of the maize genome. Proc Natl Acad Sci U S A (2009) 1.37
Structure-based discovery and description of plant and animal Helitrons. Proc Natl Acad Sci U S A (2009) 1.27
The functional role of pack-MULEs in rice inferred from purifying selection and expression profile. Plant Cell (2009) 1.27
Spreading of heterochromatin is limited to specific families of maize retrotransposons. PLoS Genet (2012) 1.25
Unique evolutionary pattern of numbers of gramineous NBS-LRR genes. Mol Genet Genomics (2010) 1.24
Computational prediction and molecular confirmation of Helitron transposons in the maize genome. BMC Genomics (2008) 1.19
A comparative computational analysis of nonautonomous helitron elements between maize and rice. BMC Genomics (2008) 1.15
Life at the extreme: lessons from the genome. Genome Biol (2012) 1.14
Haplotype structure strongly affects recombination in a maize genetic interval polymorphic for Helitron and retrotransposon insertions. Proc Natl Acad Sci U S A (2009) 1.12
Entering the second century of maize quantitative genetics. Heredity (Edinb) (2013) 1.09
Macrotransposition and other complex chromosomal restructuring in maize by closely linked transposons in direct orientation. Plant Cell (2008) 1.06
Maize RNA polymerase IV defines trans-generational epigenetic variation. Plant Cell (2013) 1.02
Genome-wide characterization of the HD-ZIP IV transcription factor family in maize: preferential expression in the epidermis. Plant Physiol (2011) 0.99
Differential gene expression and epiregulation of alpha zein gene copies in maize haplotypes. PLoS Genet (2011) 0.99
The dynamics of LTR retrotransposon accumulation across 25 million years of panicoid grass evolution. Heredity (Edinb) (2013) 0.98
HelitronScanner uncovers a large overlooked cache of Helitron transposons in many plant genomes. Proc Natl Acad Sci U S A (2014) 0.97
Gene capture by Helitron transposons reshuffles the transcriptome of maize. Genetics (2011) 0.97
Excision of Helitron transposons in maize. Genetics (2009) 0.95
Genetic dissection of maize phenology using an intraspecific introgression library. BMC Plant Biol (2011) 0.95
Rolling-circle transposons catalyze genomic innovation in a mammalian lineage. Genome Biol Evol (2014) 0.95
Creating Order from Chaos: Epigenome Dynamics in Plants with Complex Genomes. Plant Cell (2016) 0.92
Genome-wide characterization of nonreference transposons reveals evolutionary propensities of transposons in soybean. Plant Cell (2012) 0.90
A cornucopia of Helitrons shapes the maize genome. Proc Natl Acad Sci U S A (2009) 0.90
Exceptional lability of a genomic complex in rice and its close relatives revealed by interspecific and intraspecific comparison and population analysis. BMC Genomics (2011) 0.87
Genome size variation in wild and cultivated maize along altitudinal gradients. New Phytol (2013) 0.86
The complete Ac/Ds transposon family of maize. BMC Genomics (2011) 0.86
Nascent transcription affected by RNA polymerase IV in Zea mays. Genetics (2015) 0.84
Three groups of transposable elements with contrasting copy number dynamics and host responses in the maize (Zea mays ssp. mays) genome. PLoS Genet (2014) 0.84
European flint landraces grown in situ reveal adaptive introgression from modern maize. PLoS One (2015) 0.84
Genome-wide prediction of nucleosome occupancy in maize reveals plant chromatin structural features at genes and other elements at multiple scales. Plant Physiol (2013) 0.84
Structural characterization of helitrons and their stepwise capturing of gene fragments in the maize genome. BMC Genomics (2011) 0.82
Selective acquisition and retention of genomic sequences by Pack-Mutator-like elements based on guanine-cytosine content and the breadth of expression. Plant Physiol (2013) 0.81
Identification of an active Mutator-like element (MULE) in rice (Oryza sativa). Mol Genet Genomics (2012) 0.81
Transcriptome sequencing of two wild barley (Hordeum spontaneum L.) ecotypes differentially adapted to drought stress reveals ecotype-specific transcripts. BMC Genomics (2014) 0.80
Co-evolution of plant LTR-retrotransposons and their host genomes. Protein Cell (2013) 0.80
Repetitive DNA and Plant Domestication: Variation in Copy Number and Proximity to Genes of LTR-Retrotransposons among Wild and Cultivated Sunflower (Helianthus annuus) Genotypes. Genome Biol Evol (2015) 0.80
Genomic resources for gene discovery, functional genome annotation, and evolutionary studies of maize and its close relatives. Genetics (2013) 0.79
Polarized gene conversion at the bz locus of maize. Proc Natl Acad Sci U S A (2014) 0.79
DcSto: carrot Stowaway-like elements are abundant, diverse, and polymorphic. Genetica (2013) 0.76
The 172-kb genomic DNA region of the O. rufipogon yld1.1 locus: comparative sequence analysis with O. sativa ssp. japonica and O. sativa ssp. indica. Funct Integr Genomics (2008) 0.76
Predicting the size of the progeny mapping population required to positionally clone a gene. Genetics (2007) 0.76
Tandem organization of StarkB element (22.8 kb) in the maize B chromosome. Mol Genet Genomics (2009) 0.76
Heritable gene expression differences between apomictic clone members in Taraxacum officinale: Insights into early stages of evolutionary divergence in asexual plants. BMC Genomics (2016) 0.76
Retrotransposon polymorphisms affect genic recombination in maize. Plant Cell (2008) 0.75
Ty1-copia elements reveal diverse insertion sites linked to polymorphisms among flax (Linum usitatissimum L.) accessions. BMC Genomics (2016) 0.75
MuTAnT: a family of Mutator-like transposable elements targeting TA microsatellites in Medicago truncatula. Genetica (2015) 0.75
Nested retrotransposons in the intergenic regions of the maize genome. Science (1996) 12.95
The paleontology of intergene retrotransposons of maize. Nat Genet (1998) 8.55
The limits of selection during maize domestication. Nature (1999) 8.14
Structure of linkage disequilibrium and phenotypic associations in the maize genome. Proc Natl Acad Sci U S A (2001) 7.57
A single domestication for maize shown by multilocus microsatellite genotyping. Proc Natl Acad Sci U S A (2002) 7.49
Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.). Proc Natl Acad Sci U S A (2001) 6.35
Intraspecific violation of genetic colinearity and its implications in maize. Proc Natl Acad Sci U S A (2002) 5.85
Rapid recent growth and divergence of rice nuclear genomes. Proc Natl Acad Sci U S A (2004) 5.35
Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis. Genome Res (2002) 5.15
Pack-MULE transposable elements mediate gene evolution in plants. Nature (2004) 5.13
Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize. Nat Genet (2005) 4.47
Investigation of the bottleneck leading to the domestication of maize. Proc Natl Acad Sci U S A (1998) 4.29
Mechanisms of recent genome size variation in flowering plants. Ann Bot (2005) 3.86
Rolling-circle transposons in eukaryotes. Proc Natl Acad Sci U S A (2001) 3.81
Genetic structure and diversity among maize inbred lines as inferred from DNA microsatellites. Genetics (2003) 3.57
Retrotransposon BARE-1 and Its Role in Genome Evolution in the Genus Hordeum. Plant Cell (1999) 3.30
Sequence composition and genome organization of maize. Proc Natl Acad Sci U S A (2004) 3.22
Genetic diversity and selection in the maize starch pathway. Proc Natl Acad Sci U S A (2002) 3.20
Evolution of DNA sequence nonhomologies among maize inbreds. Plant Cell (2005) 3.17
Gene expression of a gene family in maize based on noncollinear haplotypes. Proc Natl Acad Sci U S A (2003) 3.14
Gene movement by Helitron transposons contributes to the haplotype variability of maize. Proc Natl Acad Sci U S A (2005) 3.13
A contiguous 66-kb barley DNA sequence provides evidence for reversible genome expansion. Genome Res (2000) 3.10
Sequence of three bronze alleles of maize and correlation with the genetic fine structure. Genetics (1988) 3.02
Pattern of diversity in the genomic region near the maize domestication gene tb1. Proc Natl Acad Sci U S A (2003) 2.85
Recombination rates between adjacent genic and retrotransposon regions in maize vary by 2 orders of magnitude. Proc Natl Acad Sci U S A (2002) 2.69
A large-scale screen for artificial selection in maize identifies candidate agronomic loci for domestication and crop improvement. Plant Cell (2005) 2.50
Sequence, regulation, and evolution of the maize 22-kD alpha zein gene family. Genome Res (2001) 2.19
The maize genome contains a helitron insertion. Plant Cell (2003) 2.15
The highly recombinogenic bz locus lies in an unusually gene-rich region of the maize genome. Proc Natl Acad Sci U S A (2001) 1.88
Formation of solo-LTRs through unequal homologous recombination counterbalances amplifications of LTR retrotransposons in rice Oryza sativa L. Mol Biol Evol (2003) 1.88
A novel class of Helitron-related transposable elements in maize contain portions of multiple pseudogenes. Plant Mol Biol (2005) 1.73
Comparative recombination distances among Zea mays L. inbreds, wide crosses and interspecific hybrids. Genetics (1995) 1.57
Characterization of repetitive DNA elements in Arabidopsis. J Mol Evol (1999) 1.54
A gene-enriched BAC library for cloning large allele-specific fragments from maize: isolation of a 240-kb contig of the bronze region. Genome Res (2000) 1.20
Estimating a nucleotide substitution rate for maize from polymorphism at a major domestication locus. Mol Biol Evol (2005) 1.14
Region-specific cis- and trans-acting factors contribute to genetic variability in meiotic recombination in maize. Genetics (1997) 1.08
Jittery, a Mutator distant relative with a paradoxical mobile behavior: excision without reinsertion. Plant Cell (2004) 1.07
Cis-effects on meiotic recombination across distinct a1-sh2 intervals in a common Zea genetic background. Genetics (2005) 0.97
Inheritance, intracellular localization, and genetic variation of phosphoglucomutase isozymes in maize (Zea mays L.). Biochem Genet (1983) 0.91
Helitrons contribute to the lack of gene colinearity observed in modern maize inbreds. Proc Natl Acad Sci U S A (2005) 0.88
Intraspecific violation of genetic colinearity and its implications in maize. Proc Natl Acad Sci U S A (2002) 5.85
Gene movement by Helitron transposons contributes to the haplotype variability of maize. Proc Natl Acad Sci U S A (2005) 3.13
Recombination rates between adjacent genic and retrotransposon regions in maize vary by 2 orders of magnitude. Proc Natl Acad Sci U S A (2002) 2.69
Organization and variability of the maize genome. Curr Opin Plant Biol (2006) 1.98
Use of the transposon Ac as a gene-searching engine in the maize genome. Plant Cell (2002) 1.55
The polychromatic Helitron landscape of the maize genome. Proc Natl Acad Sci U S A (2009) 1.37
Computational prediction and molecular confirmation of Helitron transposons in the maize genome. BMC Genomics (2008) 1.19
Haplotype structure strongly affects recombination in a maize genetic interval polymorphic for Helitron and retrotransposon insertions. Proc Natl Acad Sci U S A (2009) 1.12
Jittery, a Mutator distant relative with a paradoxical mobile behavior: excision without reinsertion. Plant Cell (2004) 1.07
Macrotransposition and other complex chromosomal restructuring in maize by closely linked transposons in direct orientation. Plant Cell (2008) 1.06
A mutation in the nuclear-encoded plastid ribosomal protein S9 leads to early embryo lethality in maize. Plant J (2004) 0.96
Excision of Helitron transposons in maize. Genetics (2009) 0.95
The maize aberrant pollen transmission 1 gene is a SABRE/KIP homolog required for pollen tube growth. Genetics (2005) 0.95
Characterization of the monoterpene synthase gene tps26, the ortholog of a gene induced by insect herbivory in maize. Plant Physiol (2008) 0.86
The maize high-lysine mutant opaque7 is defective in an acyl-CoA synthetase-like protein. Genetics (2011) 0.86
The complete Ac/Ds transposon family of maize. BMC Genomics (2011) 0.86
Gene tagging with engineered Ds elements in maize. Methods Mol Biol (2013) 0.84
TED, an autonomous and rare maize transposon of the mutator superfamily with a high gametophytic excision frequency. Plant Cell (2013) 0.79
Dynamic evolution of bz orthologous regions in the Andropogoneae and other grasses. Plant J (2012) 0.78
The spectrum and frequency of self-inflicted and host gene mutations produced by the transposon Ac in maize. Plant Cell (2012) 0.78
Mx-rMx, a family of interacting transposons in the growing hAT superfamily of maize. Plant Cell (2005) 0.78
InsertionMapper: a pipeline tool for the identification of targeted sequences from multidimensional high throughput sequencing data. BMC Genomics (2013) 0.77
Variation in allelic expression associated with a recombination hotspot in Zea mays. Plant J (2014) 0.76
Visualizing bz1 missense suppression in Zea mays: an assay for monocot tRNA expression and utilization. Plant Mol Biol (2006) 0.75