Published in Cell on April 19, 2002
A survey of small RNA-encoding genes in Escherichia coli. Nucleic Acids Res (2003) 4.10
Identification of new noncoding RNAs in Listeria monocytogenes and prediction of mRNA targets. Nucleic Acids Res (2007) 2.75
Identification of putative noncoding RNAs among the RIKEN mouse full-length cDNA collection. Genome Res (2003) 2.63
MicC, a second small-RNA regulator of Omp protein expression in Escherichia coli. J Bacteriol (2004) 2.53
Characterization of the Staphylococcus aureus heat shock, cold shock, stringent, and SOS responses and their effects on log-phase mRNA turnover. J Bacteriol (2006) 2.50
A small RNA regulates multiple ABC transporter mRNAs by targeting C/A-rich elements inside and upstream of ribosome-binding sites. Genes Dev (2007) 2.44
Multiple small RNAs act additively to integrate sensory information and control quorum sensing in Vibrio harveyi. Genes Dev (2007) 2.33
Evidence for a second class of S-adenosylmethionine riboswitches and other regulatory RNA motifs in alpha-proteobacteria. Genome Biol (2005) 2.32
6S RNA is a widespread regulator of eubacterial RNA polymerase that resembles an open promoter. RNA (2005) 2.28
A PhoQ/P-regulated small RNA regulates sensitivity of Escherichia coli to antimicrobial peptides. Mol Microbiol (2009) 2.03
Detection of non-coding RNAs on the basis of predicted secondary structure formation free energy change. BMC Bioinformatics (2006) 2.01
Genomic profiling of iron-responsive genes in Salmonella enterica serovar typhimurium by high-throughput screening of a random promoter library. J Bacteriol (2003) 1.88
The single-nucleotide resolution transcriptome of Pseudomonas aeruginosa grown in body temperature. PLoS Pathog (2012) 1.72
6S RNA function enhances long-term cell survival. J Bacteriol (2004) 1.61
SsrA-mediated trans-translation plays a role in mRNA quality control by facilitating degradation of truncated mRNAs. RNA (2003) 1.56
RyhB, an iron-responsive small RNA molecule, regulates Shigella dysenteriae virulence. Infect Immun (2007) 1.42
Identification of 13 novel human modification guide RNAs. Nucleic Acids Res (2003) 1.38
A novel fur- and iron-regulated small RNA, NrrF, is required for indirect fur-mediated regulation of the sdhA and sdhC genes in Neisseria meningitidis. J Bacteriol (2007) 1.37
Identification of differentially expressed small non-coding RNAs in the legume endosymbiont Sinorhizobium meliloti by comparative genomics. Mol Microbiol (2007) 1.35
4-thio-U cross-linking identifies the active site of the VS ribozyme. EMBO J (2002) 1.26
The small noncoding DsrA RNA is an acid resistance regulator in Escherichia coli. J Bacteriol (2004) 1.25
Analysis of temporal gene expression during Bacillus subtilis spore germination and outgrowth. J Bacteriol (2007) 1.24
A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti. BMC Genomics (2010) 1.24
Deep sequencing reveals as-yet-undiscovered small RNAs in Escherichia coli. BMC Genomics (2011) 1.16
Regulation of 6S RNA biogenesis by switching utilization of both sigma factors and endoribonucleases. Nucleic Acids Res (2004) 1.15
Microbiology, genomics, and clinical significance of the Pseudomonas fluorescens species complex, an unappreciated colonizer of humans. Clin Microbiol Rev (2014) 1.10
Deep sequencing uncovers numerous small RNAs on all four replicons of the plant pathogen Agrobacterium tumefaciens. RNA Biol (2012) 1.08
Differential transcriptional profile of Corynebacterium pseudotuberculosis in response to abiotic stresses. BMC Genomics (2014) 1.07
Predicting non-coding RNA genes in Escherichia coli with boosted genetic programming. Nucleic Acids Res (2005) 1.07
Experimental identification and characterization of 97 novel npcRNA candidates in Salmonella enterica serovar Typhi. Nucleic Acids Res (2010) 1.06
Identification of small noncoding RNAs in Helicobacter pylori by a bioinformatics-based approach. Curr Microbiol (2009) 1.04
Construction and enhancement of a minimal genetic and logic gate. Appl Environ Microbiol (2008) 1.02
Identification of two small regulatory RNAs linked to virulence in Brucella abortus 2308. Mol Microbiol (2012) 1.01
Genomic characterization of Haemophilus parasuis SH0165, a highly virulent strain of serovar 5 prevalent in China. PLoS One (2011) 1.01
6S RNA regulation of pspF transcription leads to altered cell survival at high pH. J Bacteriol (2006) 0.99
Replication-independent long-distance trafficking by viral RNAs in Nicotiana benthamiana. Plant Cell (2007) 0.98
Sm-like protein Hfq: location of the ATP-binding site and the effect of ATP on Hfq-- RNA complexes. Protein Sci (2007) 0.97
Evolutionary dynamics of small RNAs in 27 Escherichia coli and Shigella genomes. Genome Biol Evol (2012) 0.96
Genome-wide detection of predicted non-coding RNAs in Rhizobium etli expressed during free-living and host-associated growth using a high-resolution tiling array. BMC Genomics (2010) 0.95
Conservation and Occurrence of Trans-Encoded sRNAs in the Rhizobiales. Genes (Basel) (2011) 0.94
The small RNA GcvB regulates sstT mRNA expression in Escherichia coli. J Bacteriol (2008) 0.94
The importance of the small RNA chaperone Hfq for growth of epidemic Yersinia pestis, but not Yersinia pseudotuberculosis, with implications for plague biology. J Bacteriol (2010) 0.92
Analysis of the small RNA transcriptional response in multidrug-resistant Staphylococcus aureus after antimicrobial exposure. Antimicrob Agents Chemother (2013) 0.91
ArtR, a novel sRNA of Staphylococcus aureus, regulates α-toxin expression by targeting the 5' UTR of sarT mRNA. Med Microbiol Immunol (2013) 0.91
Rho-dependent termination of ssrS (6S RNA) transcription in Escherichia coli: implication for 3' processing of 6S RNA and expression of downstream ygfA (putative 5-formyl-tetrahydrofolate cyclo-ligase). J Biol Chem (2010) 0.91
Identification and functional characterization of small non-coding RNAs in Xanthomonas oryzae pathovar oryzae. BMC Genomics (2011) 0.87
Transcriptional analysis of Deinococcus radiodurans reveals novel small RNAs that are differentially expressed under ionizing radiation. Appl Environ Microbiol (2014) 0.85
Regulatory RNAs: charming gene management styles for synthetic biology applications. RNA Biol (2013) 0.82
Discovery of ethanol-responsive small RNAs in Zymomonas mobilis. Appl Environ Microbiol (2014) 0.81
Bacterial small RNAs in the Genus Rickettsia. BMC Genomics (2015) 0.81
Deep sequencing-based identification of small regulatory RNAs in Synechocystis sp. PCC 6803. PLoS One (2014) 0.80
Intergenic regions of Borrelia plasmids contain phylogenetically conserved RNA secondary structure motifs. BMC Genomics (2009) 0.80
Dissemination of 6S RNA among bacteria. RNA Biol (2014) 0.79
The novel cis-encoded small RNA h2cR is a negative regulator of hfq2 in Burkholderia cenocepacia. PLoS One (2012) 0.79
The novel regulatory ncRNA, NfiS, optimizes nitrogen fixation via base pairing with the nitrogenase gene nifK mRNA in Pseudomonas stutzeri A1501. Proc Natl Acad Sci U S A (2016) 0.78
Significant rewiring of the transcriptome and proteome of an Escherichia coli strain harboring a tailored exogenous global regulator IrrE. PLoS One (2012) 0.78
Plasmid pPCP1-derived sRNA HmsA promotes biofilm formation of Yersinia pestis. BMC Microbiol (2016) 0.75
Effect of Crc and Hfq proteins on the transcription, processing, and stability of the Pseudomonas putida CrcZ sRNA. RNA (2016) 0.75
Bacillus subtilis 6S-2 RNA serves as a template for short transcripts in vivo. RNA (2016) 0.75