Published in J Bacteriol on March 09, 2007
Bacterial small RNA regulators: versatile roles and rapidly evolving variations. Cold Spring Harb Perspect Biol (2011) 3.75
High-throughput, kingdom-wide prediction and annotation of bacterial non-coding RNAs. PLoS One (2008) 1.80
TargetRNA: a tool for predicting targets of small RNA action in bacteria. Nucleic Acids Res (2008) 1.64
Staphylococcus aureus fur regulates the expression of virulence factors that contribute to the pathogenesis of pneumonia. Infect Immun (2010) 1.59
The RNA chaperone Hfq is involved in stress response and virulence in Neisseria meningitidis and is a pleiotropic regulator of protein expression. Infect Immun (2009) 1.27
Transcriptional regulation by Ferric Uptake Regulator (Fur) in pathogenic bacteria. Front Cell Infect Microbiol (2013) 1.26
Elemental economy: microbial strategies for optimizing growth in the face of nutrient limitation. Adv Microb Physiol (2012) 1.19
Transcriptional and functional analysis of the Neisseria gonorrhoeae Fur regulon. J Bacteriol (2010) 1.06
Characterization of a heme-regulated non-coding RNA encoded by the prrF locus of Pseudomonas aeruginosa. PLoS One (2010) 0.99
Transcriptional landscape and essential genes of Neisseria gonorrhoeae. Nucleic Acids Res (2014) 0.98
Fur controls iron homeostasis and oxidative stress defense in the oligotrophic alpha-proteobacterium Caulobacter crescentus. Nucleic Acids Res (2009) 0.98
The Hfq-dependent small noncoding RNA NrrF directly mediates Fur-dependent positive regulation of succinate dehydrogenase in Neisseria meningitidis. J Bacteriol (2008) 0.97
Fur-mediated activation of gene transcription in the human pathogen Neisseria gonorrhoeae. J Bacteriol (2012) 0.93
Transcript analysis of nrrF, a Fur repressed sRNA of Neisseria gonorrhoeae. Microb Pathog (2009) 0.93
Molecular characterization and identification of proteins regulated by Hfq in Neisseria meningitidis. FEMS Microbiol Lett (2009) 0.92
Iron-responsive bacterial small RNAs: variations on a theme. Metallomics (2013) 0.92
The Gonococcal Transcriptome during Infection of the Lower Genital Tract in Women. PLoS One (2015) 0.91
Ferric uptake regulator and its role in the pathogenesis of nontypeable Haemophilus influenzae. Infect Immun (2013) 0.90
Role of Hfq in iron-dependent and -independent gene regulation in Neisseria meningitidis. Microbiology (2010) 0.90
Expression of the gonococcal global regulatory protein Fur and genes encompassing the Fur and iron regulon during in vitro and in vivo infection in women. J Bacteriol (2008) 0.90
Global transcriptome analysis reveals small RNAs affecting Neisseria meningitidis bacteremia. PLoS One (2015) 0.87
A pseudo-tRNA modulates antibiotic resistance in Bacillus cereus. PLoS One (2012) 0.86
Global transcriptional response of Caulobacter crescentus to iron availability. BMC Genomics (2013) 0.86
Analysis of the regulated transcriptome of Neisseria meningitidis in human blood using a tiling array. J Bacteriol (2012) 0.85
Virulence determinants involved in differential host niche adaptation of Neisseria meningitidis and Neisseria gonorrhoeae. Med Microbiol Immunol (2010) 0.84
Small RNA ArrF regulates the expression of sodB and feSII genes in Azotobacter vinelandii. Curr Microbiol (2008) 0.84
The Metal-Dependent Regulators FurA and FurB from Mycobacterium Tuberculosis. Int J Mol Sci (2008) 0.84
Sibling rivalry: related bacterial small RNAs and their redundant and non-redundant roles. Front Cell Infect Microbiol (2014) 0.84
Fur-mediated global regulatory circuits in pathogenic Neisseria species. J Bacteriol (2012) 0.83
Novel iron-regulated and Fur-regulated small regulatory RNAs in Aggregatibacter actinomycetemcomitans. Mol Oral Microbiol (2012) 0.83
Identification of sRNAs expressed by the human pathogen Neisseria gonorrhoeae under disparate growth conditions. Front Microbiol (2014) 0.82
Identification of a novel anti-sigmaE factor in Neisseria meningitidis. BMC Microbiol (2010) 0.81
Neisseria prophage repressor implicated in gonococcal pathogenesis. Infect Immun (2013) 0.81
Control of RNA stability by NrrF, an iron-regulated small RNA in Neisseria gonorrhoeae. J Bacteriol (2013) 0.81
The prrF-encoded small regulatory RNAs are required for iron homeostasis and virulence of Pseudomonas aeruginosa. Infect Immun (2014) 0.81
Characterization of a novel antisense RNA in the major pilin locus of Neisseria meningitidis influencing antigenic variation. J Bacteriol (2015) 0.80
A high-throughput method to examine protein-nucleotide interactions identifies targets of the bacterial transcriptional regulatory protein fur. PLoS One (2014) 0.79
Regulation of iron metabolism by Pyrococcus furiosus. J Bacteriol (2013) 0.78
HrrF is the Fur-regulated small RNA in nontypeable Haemophilus influenzae. PLoS One (2014) 0.78
Characterization of the Neisseria gonorrhoeae Iron and Fur Regulatory Network. J Bacteriol (2016) 0.77
Correia Repeat Enclosed Elements and Non-Coding RNAs in the Neisseria Species. Microorganisms (2016) 0.76
The Pseudomonas aeruginosa PrrF Small RNAs Regulate Iron Homeostasis during Acute Murine Lung Infection. Infect Immun (2017) 0.75
Neisseria meningitidis Uses Sibling Small Regulatory RNAs To Switch from Cataplerotic to Anaplerotic Metabolism. MBio (2017) 0.75
The Hfq regulon of Neisseria meningitidis. FEBS Open Bio (2017) 0.75
The primary transcriptome of Neisseria meningitidis and its interaction with the RNA chaperone Hfq. Nucleic Acids Res (2017) 0.75
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res (1997) 665.31
Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res (2003) 77.89
Complete genome sequence of Neisseria meningitidis serogroup B strain MC58. Science (2000) 16.04
The small RNA chaperone Hfq and multiple small RNAs control quorum sensing in Vibrio harveyi and Vibrio cholerae. Cell (2004) 8.89
A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli. Proc Natl Acad Sci U S A (2002) 7.99
Novel small RNA-encoding genes in the intergenic regions of Escherichia coli. Curr Biol (2001) 7.56
Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coli. Genes Dev (2003) 7.33
The small RNA regulators of Escherichia coli: roles and mechanisms*. Annu Rev Microbiol (2004) 5.72
Prediction of transcription terminators in bacterial genomes. J Mol Biol (2000) 5.28
Global analysis of small RNA and mRNA targets of Hfq. Mol Microbiol (2003) 4.98
Computational identification of noncoding RNAs in E. coli by comparative genomics. Curr Biol (2001) 4.58
Fur regulon in gram-negative bacteria. Identification and characterization of new iron-regulated Escherichia coli genes by a fur titration assay. J Mol Biol (1994) 4.09
Effect of RyhB small RNA on global iron use in Escherichia coli. J Bacteriol (2005) 4.01
Identification of tandem duplicate regulatory small RNAs in Pseudomonas aeruginosa involved in iron homeostasis. Proc Natl Acad Sci U S A (2004) 3.31
Target prediction for small, noncoding RNAs in bacteria. Nucleic Acids Res (2006) 2.90
A bioinformatics based approach to discover small RNA genes in the Escherichia coli genome. Biosystems (2002) 2.31
Identification of iron-activated and -repressed Fur-dependent genes by transcriptome analysis of Neisseria meningitidis group B. Proc Natl Acad Sci U S A (2003) 2.17
Identification of 17 Pseudomonas aeruginosa sRNAs and prediction of sRNA-encoding genes in 10 diverse pathogens using the bioinformatic tool sRNAPredict2. Nucleic Acids Res (2006) 2.11
Fur functions as an activator and as a repressor of putative virulence genes in Neisseria meningitidis. Mol Microbiol (2004) 2.08
Small RNAs in bacteria: diverse regulators of gene expression in response to environmental changes. Cell (2002) 2.00
Binding of the fur (ferric uptake regulator) repressor of Escherichia coli to arrays of the GATAAT sequence. J Mol Biol (1998) 1.95
Characterization of the small untranslated RNA RyhB and its regulon in Vibrio cholerae. J Bacteriol (2005) 1.60
Identification of the iron-responsive genes of Neisseria gonorrhoeae by microarray analysis in defined medium. J Bacteriol (2005) 1.58
Functional domains of the Escherichia coli ferric uptake regulator protein (Fur). Mol Gen Genet (1995) 1.50
The gonococcal fur regulon: identification of additional genes involved in major catabolic, recombination, and secretory pathways. J Bacteriol (2002) 1.26
Characterization of a novel Neisseria meningitidis Fur and iron-regulated operon required for protection from oxidative stress: utility of DNA microarray in the assignment of the biological role of hypothetical genes. Mol Microbiol (2004) 1.24
Analysis of Fur binding to operator sequences within the Neisseria gonorrhoeae fbpA promoter. J Bacteriol (1996) 1.19
Effect of Neisseria meningitidis fur mutations on global control of gene transcription. J Bacteriol (2006) 1.16
Coordinated repression in vitro of the divergent fepA-fes promoters of Escherichia coli by the iron uptake regulation (Fur) protein. J Bacteriol (1998) 1.16
The iron-responsive regulator fur is transcriptionally autoregulated and not essential in Neisseria meningitidis. J Bacteriol (2003) 1.09
Small RNA regulators of translation: mechanisms of action and approaches for identifying new small RNAs. Cold Spring Harb Symp Quant Biol (2001) 0.93
Expression of the iron-activated nspA and secY genes in Neisseria meningitidis group B by Fur-dependent and -independent mechanisms. J Bacteriol (2006) 0.92
Computational analysis of bacterial RNA-Seq data. Nucleic Acids Res (2013) 2.50
GenProtEC: an updated and improved analysis of functions of Escherichia coli K-12 proteins. Nucleic Acids Res (2004) 2.27
Toll-like receptor 2 plays a critical role in the progression of atherosclerosis that is independent of dietary lipids. Atherosclerosis (2007) 1.67
Stimulation of Toll-like receptor 2 in human platelets induces a thromboinflammatory response through activation of phosphoinositide 3-kinase. Circ Res (2008) 1.52
Hemin-dependent modulation of the lipid A structure of Porphyromonas gingivalis lipopolysaccharide. Infect Immun (2006) 1.45
Engagement of specific innate immune signaling pathways during Porphyromonas gingivalis induced chronic inflammation and atherosclerosis. Front Biosci (2008) 1.37
Small non-coding RNAs in Streptomyces coelicolor. Nucleic Acids Res (2008) 1.31
Pathogen-mediated inflammatory atherosclerosis is mediated in part via Toll-like receptor 2-induced inflammatory responses. J Innate Immun (2010) 1.21
Bacterial fimbriae stimulate proinflammatory activation in the endothelium through distinct TLRs. J Immunol (2008) 1.19
Macrophage-specific TLR2 signaling mediates pathogen-induced TNF-dependent inflammatory oral bone loss. J Immunol (2012) 1.18
Sensitization of human aortic endothelial cells to lipopolysaccharide via regulation of Toll-like receptor 4 by bacterial fimbria-dependent invasion. Infect Immun (2005) 1.10
Porphyromonas gingivalis mediated periodontal disease and atherosclerosis: disparate diseases with commonalities in pathogenesis through TLRs. Curr Pharm Des (2007) 1.09
Porphyromonas gingivalis fimbria-dependent activation of inflammatory genes in human aortic endothelial cells. Infect Immun (2005) 1.08
Microbial carriage state of peripheral blood dendritic cells (DCs) in chronic periodontitis influences DC differentiation, atherogenic potential. J Immunol (2012) 1.02
Interleukin 1 receptor 1 and interleukin 1β regulate megakaryocyte maturation, platelet activation, and transcript profile during inflammation in mice and humans. Arterioscler Thromb Vasc Biol (2014) 1.02
Protective role for TLR4 signaling in atherosclerosis progression as revealed by infection with a common oral pathogen. J Immunol (2012) 1.02
Porphyromonas gingivalis accelerates inflammatory atherosclerosis in the innominate artery of ApoE deficient mice. Atherosclerosis (2010) 1.02
cis- and trans-acting elements involved in regulation of norB (norZ), the gene encoding nitric oxide reductase in Neisseria gonorrhoeae. Microbiology (2008) 1.01
Mice lacking inducible nitric oxide synthase demonstrate impaired killing of Porphyromonas gingivalis. Infect Immun (2003) 1.01
Assessing computational tools for the discovery of small RNA genes in bacteria. RNA (2011) 1.00
The C-terminal domains of the gingipain K polyprotein are necessary for assembly of the active enzyme and expression of associated activities. Mol Microbiol (2004) 0.96
Expression of the iron-activated nspA and secY genes in Neisseria meningitidis group B by Fur-dependent and -independent mechanisms. J Bacteriol (2006) 0.92
Domain evolution and functional diversification of sulfite reductases. Astrobiology (2005) 0.91
Immunization with Porphyromonas gingivalis capsular polysaccharide prevents P. gingivalis-elicited oral bone loss in a murine model. Infect Immun (2003) 0.90
Expression of the gonococcal global regulatory protein Fur and genes encompassing the Fur and iron regulon during in vitro and in vivo infection in women. J Bacteriol (2008) 0.90
Multiple regulators of the Flavohaemoglobin (hmp) gene of Salmonella enterica serovar Typhimurium include RamA, a transcriptional regulator conferring the multidrug resistance phenotype. Arch Microbiol (2006) 0.90
The gonococcal Fur-regulated tbpA and tbpB genes are expressed during natural mucosal gonococcal infection. Infect Immun (2005) 0.87
Small RNAs of the halophilic archaeon Haloferax volcanii. Biochem Soc Trans (2009) 0.87
Bioinformatic prediction and experimental verification of sRNAs in the haloarchaeon Haloferax volcanii. RNA Biol (2011) 0.86
Lysine-specific gingipain K and heme/hemoglobin receptor HmuR are involved in heme utilization in Porphyromonas gingivalis. Acta Biochim Pol (2004) 0.86
Disruption of immune regulation by microbial pathogens and resulting chronic inflammation. J Cell Physiol (2013) 0.85
Neisseria prophage repressor implicated in gonococcal pathogenesis. Infect Immun (2013) 0.81
Noncanonical dendritic cell differentiation and survival driven by a bacteremic pathogen. J Leukoc Biol (2013) 0.79
Protein families reflect the metabolic diversity of organisms and provide support for functional prediction. Physiol Genomics (2009) 0.78
Biomolecular detection employing the Interferometric Reflectance Imaging Sensor (IRIS). J Vis Exp (2011) 0.77
tRNA-like elements in Haloferax volcanii. Biochimie (2011) 0.76
Computational prediction and transcriptional analysis of sRNAs in Nitrosomonas europaea. FEMS Microbiol Lett (2010) 0.76