Published in Biosystems on June 18, 2002
Universality and flexibility in gene expression from bacteria to human. Proc Natl Acad Sci U S A (2004) 2.03
Cooperative adaptation to establishment of a synthetic bacterial mutualism. PLoS One (2011) 0.98
Adaptive response of a gene network to environmental changes by fitness-induced attractor selection. PLoS One (2006) 2.30
Universality and flexibility in gene expression from bacteria to human. Proc Natl Acad Sci U S A (2004) 2.03
Sorting of lipoproteins to the outer membrane in E. coli. Biochim Biophys Acta (2004) 1.77
Protein folding by the effects of macromolecular crowding. Protein Sci (2004) 1.71
On the relation between fluctuation and response in biological systems. Proc Natl Acad Sci U S A (2003) 1.70
Darwinian evolution in a translation-coupled RNA replication system within a cell-like compartment. Nat Commun (2013) 1.65
Comparison of sequence reads obtained from three next-generation sequencing platforms. PLoS One (2011) 1.63
Importance of parasite RNA species repression for prolonged translation-coupled RNA self-replication. Chem Biol (2012) 1.55
Lipoprotein trafficking in Escherichia coli. Arch Microbiol (2004) 1.46
Left-right patterning of the mouse lateral plate requires nodal produced in the node. Dev Biol (2003) 1.41
Nonredundant roles of Sema4A in the immune system: defective T cell priming and Th1/Th2 regulation in Sema4A-deficient mice. Immunity (2005) 1.39
Expression of a cascading genetic network within liposomes. FEBS Lett (2004) 1.30
Femtoliter compartment in liposomes for in vitro selection of proteins. Anal Biochem (2006) 1.27
Replication of genetic information with self-encoded replicase in liposomes. Chembiochem (2008) 1.26
An improved physico-chemical model of hybridization on high-density oligonucleotide microarrays. Bioinformatics (2008) 1.21
Transition from positive to neutral in mutation fixation along with continuing rising fitness in thermal adaptive evolution. PLoS Genet (2010) 1.19
Coupling of the fusion and budding of giant phospholipid vesicles containing macromolecules. Proc Natl Acad Sci U S A (2012) 1.16
Experimental optimization of probe length to increase the sequence specificity of high-density oligonucleotide microarrays. BMC Genomics (2007) 1.15
Reconstitution of DNA strand exchange mediated by Rhp51 recombinase and two mediators. PLoS Biol (2008) 1.14
Aminoacylation of the N-terminal cysteine is essential for Lol-dependent release of lipoproteins from membranes but does not depend on lipoprotein sorting signals. J Biol Chem (2002) 1.13
Transcriptome analysis of parallel-evolved Escherichia coli strains under ethanol stress. BMC Genomics (2010) 1.13
On a kinetic origin of heredity: minority control in a replicating system with mutually catalytic molecules. J Theor Biol (2002) 1.06
Construction of Escherichia coli gene expression level perturbation collection. Metab Eng (2008) 1.05
Population analysis of structural properties of giant liposomes by flow cytometry. Langmuir (2009) 1.04
Epiblast ground state is controlled by canonical Wnt/β-catenin signaling in the postimplantation mouse embryo and epiblast stem cells. PLoS One (2013) 1.03
Sorting of cells of the same size, shape, and cell cycle stage for a single cell level assay without staining. BMC Cell Biol (2006) 1.02
Evolvability of random polypeptides through functional selection within a small library. Protein Eng (2002) 1.02
Conformational change of the actomyosin complex drives the multiple stepping movement. Proc Natl Acad Sci U S A (2002) 1.02
Can an arbitrary sequence evolve towards acquiring a biological function? J Mol Evol (2003) 1.01
In vitro evolution of α-hemolysin using a liposome display. Proc Natl Acad Sci U S A (2013) 1.00
Cooperative adaptation to establishment of a synthetic bacterial mutualism. PLoS One (2011) 0.98
Multilevel comparative analysis of the contributions of genome reduction and heat shock to the Escherichia coli transcriptome. BMC Genomics (2013) 0.98
How selection affects phenotypic fluctuation. Mol Syst Biol (2009) 0.98
Ongoing phenotypic and genomic changes in experimental coevolution of RNA bacteriophage Qβ and Escherichia coli. PLoS Genet (2011) 0.97
Mechanisms underlying energy-independent transfer of lipoproteins from LolA to LolB, which have similar unclosed {beta}-barrel structures. J Biol Chem (2005) 0.97
Programmed vesicle fusion triggers gene expression. Langmuir (2011) 0.97
Noisy cell growth rate leads to fluctuating protein concentration in bacteria. Phys Biol (2009) 0.96
Experimental rugged fitness landscape in protein sequence space. PLoS One (2006) 0.96
Quantitative study of the structure of multilamellar giant liposomes as a container of protein synthesis reaction. Langmuir (2008) 0.95
Cell-free protein synthesis inside giant unilamellar vesicles analyzed by flow cytometry. Langmuir (2012) 0.95
Adaptation by stochastic switching of a monostable genetic circuit in Escherichia coli. Mol Syst Biol (2011) 0.95
Size control of giant unilamellar vesicles prepared from inverted emulsion droplets. J Colloid Interface Sci (2012) 0.95
Evolution of an arbitrary sequence in solubility. J Mol Evol (2004) 0.95
In vitro evolution of proteins. J Biosci Bioeng (2006) 0.94
Nascent chain, mRNA, and ribosome complexes generated by a pure translation system. Biochem Biophys Res Commun (2006) 0.94
Synthesis of functional proteins within liposomes. Methods Mol Biol (2010) 0.93
Quantification of structural properties of cell-sized individual liposomes by flow cytometry. J Biosci Bioeng (2006) 0.93
Detection of association and fusion of giant vesicles using a fluorescence-activated cell sorter. Langmuir (2010) 0.93
A controllable gene expression system in liposomes that includes a positive feedback loop. Mol Biosyst (2013) 0.92
Fate maps of ventral and dorsal pancreatic progenitor cells in early somite stage mouse embryos. Mech Dev (2011) 0.92
Refined method for the genomic integration of complex synthetic circuits. J Biosci Bioeng (2010) 0.92
Comprehensive analysis of the effects of Escherichia coli ORFs on protein translation reaction. Mol Cell Proteomics (2008) 0.91
Compensatory evolution of a WW domain variant lacking the strictly conserved Trp residue. J Mol Evol (2007) 0.90
Model-based analysis of non-specific binding for background correction of high-density oligonucleotide microarrays. Bioinformatics (2008) 0.90
Two nodal-responsive enhancers control left-right asymmetric expression of Nodal. Dev Dyn (2005) 0.88
Construction of a gene screening system using giant unilamellar liposomes and a fluorescence-activated cell sorter. Anal Chem (2012) 0.88
Quantifying epistatic interactions among the components constituting the protein translation system. Mol Syst Biol (2009) 0.88
Quantitative analysis of the bacteriophage Qbeta infection cycle. Biochim Biophys Acta (2008) 0.86
Importance of translation-replication balance for efficient replication by the self-encoded replicase. Chembiochem (2008) 0.86
In vitro membrane protein synthesis inside cell-sized vesicles reveals the dependence of membrane protein integration on vesicle volume. ACS Synth Biol (2013) 0.85
Functional Qbeta replicase genetically fusing essential subunits EF-Ts and EF-Tu with beta-subunit. J Biosci Bioeng (2006) 0.85
Cellular compartment model for exploring the effect of the lipidic membrane on the kinetics of encapsulated biochemical reactions. Langmuir (2010) 0.85
Hydrodynamic trapping of Tetrahymena thermophila for the long-term monitoring of cell behaviors. Lab Chip (2012) 0.85
Compartmentalization in a water-in-oil emulsion repressed the spontaneous amplification of RNA by Q beta replicase. Biochemistry (2010) 0.85
Single-cell isolation and cloning of Tetrahymena thermophila cells with a fluorescence-activated cell sorter. J Eukaryot Microbiol (2010) 0.85
Restriction of Wnt signaling in the dorsal otocyst determines semicircular canal formation in the mouse embryo. Dev Biol (2011) 0.84
Constructing partial models of cells. Cold Spring Harb Perspect Biol (2010) 0.84
Nutrient-dependent growth defects and mutability of mutators in Escherichia coli. Genes Cells (2014) 0.84
Origin of lognormal-like distributions with a common width in a growth and division process. Phys Rev E Stat Nonlin Soft Matter Phys (2011) 0.84
Correlation between evolutionary structural development and protein folding. Proc Natl Acad Sci U S A (2005) 0.83
Directed Evolution of Proteins through In Vitro Protein Synthesis in Liposomes. J Nucleic Acids (2012) 0.83
Wnt signaling regulates left-right axis formation in the node of mouse embryos. Dev Biol (2013) 0.83
Kinetic model of double-stranded RNA formation during long RNA replication by Qβ replicase. FEBS Lett (2013) 0.83
Stochastic switching induced adaptation in a starved Escherichia coli population. PLoS One (2011) 0.83
Gene expression scaled by distance to the genome replication site. Mol Biosyst (2013) 0.83
A new screening method to identify inhibitors of the Lol (localization of lipoproteins) system, a novel antibacterial target. Microbiol Immunol (2007) 0.83
Cell-free protein synthesis in a microchamber revealed the presence of an optimum compartment volume for high-order reactions. ACS Synth Biol (2013) 0.83
Identification of two forms of Q{beta} replicase with different thermal stabilities but identical RNA replication activity. J Biol Chem (2010) 0.82
Extracting characteristic properties of fitness landscape from in vitro molecular evolution: a case study on infectivity of fd phage to E.coli. J Theor Biol (2007) 0.82
Kinetic analysis of the entire RNA amplification process by Qbeta replicase. J Biol Chem (2007) 0.82
Dynamic change in promoter activation during lysine biosynthesis in Escherichia coli cells. Mol Biosyst (2007) 0.82
Cell-free protein synthesis from a single copy of DNA in a glass microchamber. Lab Chip (2012) 0.82
Kinetic analysis of β-galactosidase and β-glucuronidase tetramerization coupled with protein translation. J Biol Chem (2011) 0.82
Development of a physical model-based algorithm for the detection of single-nucleotide substitutions by using tiling microarrays. PLoS One (2013) 0.81
Importance of compartment formation for a self-encoding system. Proc Natl Acad Sci U S A (2002) 0.80