PubRank

Tetsuya Yomo

Author PubWeight™ 90.38‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 Adaptive response of a gene network to environmental changes by fitness-induced attractor selection. PLoS One 2006 2.30
2 Universality and flexibility in gene expression from bacteria to human. Proc Natl Acad Sci U S A 2004 2.03
3 Protein folding by the effects of macromolecular crowding. Protein Sci 2004 1.71
4 On the relation between fluctuation and response in biological systems. Proc Natl Acad Sci U S A 2003 1.70
5 Darwinian evolution in a translation-coupled RNA replication system within a cell-like compartment. Nat Commun 2013 1.65
6 Comparison of sequence reads obtained from three next-generation sequencing platforms. PLoS One 2011 1.63
7 Importance of parasite RNA species repression for prolonged translation-coupled RNA self-replication. Chem Biol 2012 1.55
8 Expression of a cascading genetic network within liposomes. FEBS Lett 2004 1.30
9 Femtoliter compartment in liposomes for in vitro selection of proteins. Anal Biochem 2006 1.27
10 Replication of genetic information with self-encoded replicase in liposomes. Chembiochem 2008 1.26
11 An improved physico-chemical model of hybridization on high-density oligonucleotide microarrays. Bioinformatics 2008 1.21
12 Transition from positive to neutral in mutation fixation along with continuing rising fitness in thermal adaptive evolution. PLoS Genet 2010 1.19
13 Coupling of the fusion and budding of giant phospholipid vesicles containing macromolecules. Proc Natl Acad Sci U S A 2012 1.16
14 Experimental optimization of probe length to increase the sequence specificity of high-density oligonucleotide microarrays. BMC Genomics 2007 1.15
15 Transcriptome analysis of parallel-evolved Escherichia coli strains under ethanol stress. BMC Genomics 2010 1.13
16 On a kinetic origin of heredity: minority control in a replicating system with mutually catalytic molecules. J Theor Biol 2002 1.06
17 Construction of Escherichia coli gene expression level perturbation collection. Metab Eng 2008 1.05
18 Population analysis of structural properties of giant liposomes by flow cytometry. Langmuir 2009 1.04
19 Sorting of cells of the same size, shape, and cell cycle stage for a single cell level assay without staining. BMC Cell Biol 2006 1.02
20 Evolvability of random polypeptides through functional selection within a small library. Protein Eng 2002 1.02
21 Conformational change of the actomyosin complex drives the multiple stepping movement. Proc Natl Acad Sci U S A 2002 1.02
22 Can an arbitrary sequence evolve towards acquiring a biological function? J Mol Evol 2003 1.01
23 In vitro evolution of α-hemolysin using a liposome display. Proc Natl Acad Sci U S A 2013 1.00
24 Cooperative adaptation to establishment of a synthetic bacterial mutualism. PLoS One 2011 0.98
25 Multilevel comparative analysis of the contributions of genome reduction and heat shock to the Escherichia coli transcriptome. BMC Genomics 2013 0.98
26 How selection affects phenotypic fluctuation. Mol Syst Biol 2009 0.98
27 Ongoing phenotypic and genomic changes in experimental coevolution of RNA bacteriophage Qβ and Escherichia coli. PLoS Genet 2011 0.97
28 Programmed vesicle fusion triggers gene expression. Langmuir 2011 0.97
29 Noisy cell growth rate leads to fluctuating protein concentration in bacteria. Phys Biol 2009 0.96
30 Experimental rugged fitness landscape in protein sequence space. PLoS One 2006 0.96
31 Cell-free protein synthesis inside giant unilamellar vesicles analyzed by flow cytometry. Langmuir 2012 0.95
32 Evolution of an arbitrary sequence in solubility. J Mol Evol 2004 0.95
33 Adaptation by stochastic switching of a monostable genetic circuit in Escherichia coli. Mol Syst Biol 2011 0.95
34 Quantitative study of the structure of multilamellar giant liposomes as a container of protein synthesis reaction. Langmuir 2008 0.95
35 Size control of giant unilamellar vesicles prepared from inverted emulsion droplets. J Colloid Interface Sci 2012 0.95
36 Nascent chain, mRNA, and ribosome complexes generated by a pure translation system. Biochem Biophys Res Commun 2006 0.94
37 In vitro evolution of proteins. J Biosci Bioeng 2006 0.94
38 Quantification of structural properties of cell-sized individual liposomes by flow cytometry. J Biosci Bioeng 2006 0.93
39 Synthesis of functional proteins within liposomes. Methods Mol Biol 2010 0.93
40 Detection of association and fusion of giant vesicles using a fluorescence-activated cell sorter. Langmuir 2010 0.93
41 A controllable gene expression system in liposomes that includes a positive feedback loop. Mol Biosyst 2013 0.92
42 Refined method for the genomic integration of complex synthetic circuits. J Biosci Bioeng 2010 0.92
43 Comprehensive analysis of the effects of Escherichia coli ORFs on protein translation reaction. Mol Cell Proteomics 2008 0.91
44 Compensatory evolution of a WW domain variant lacking the strictly conserved Trp residue. J Mol Evol 2007 0.90
45 Model-based analysis of non-specific binding for background correction of high-density oligonucleotide microarrays. Bioinformatics 2008 0.90
46 Construction of a gene screening system using giant unilamellar liposomes and a fluorescence-activated cell sorter. Anal Chem 2012 0.88
47 Quantifying epistatic interactions among the components constituting the protein translation system. Mol Syst Biol 2009 0.88
48 Importance of translation-replication balance for efficient replication by the self-encoded replicase. Chembiochem 2008 0.86
49 Quantitative analysis of the bacteriophage Qbeta infection cycle. Biochim Biophys Acta 2008 0.86
50 Hydrodynamic trapping of Tetrahymena thermophila for the long-term monitoring of cell behaviors. Lab Chip 2012 0.85
51 In vitro membrane protein synthesis inside cell-sized vesicles reveals the dependence of membrane protein integration on vesicle volume. ACS Synth Biol 2013 0.85
52 Functional Qbeta replicase genetically fusing essential subunits EF-Ts and EF-Tu with beta-subunit. J Biosci Bioeng 2006 0.85
53 Cellular compartment model for exploring the effect of the lipidic membrane on the kinetics of encapsulated biochemical reactions. Langmuir 2010 0.85
54 Compartmentalization in a water-in-oil emulsion repressed the spontaneous amplification of RNA by Q beta replicase. Biochemistry 2010 0.85
55 Single-cell isolation and cloning of Tetrahymena thermophila cells with a fluorescence-activated cell sorter. J Eukaryot Microbiol 2010 0.85
56 Constructing partial models of cells. Cold Spring Harb Perspect Biol 2010 0.84
57 An observation of the initial stage towards a symbiotic relationship. Biosystems 2002 0.84
58 Origin of lognormal-like distributions with a common width in a growth and division process. Phys Rev E Stat Nonlin Soft Matter Phys 2011 0.84
59 Nutrient-dependent growth defects and mutability of mutators in Escherichia coli. Genes Cells 2014 0.84
60 Stochastic switching induced adaptation in a starved Escherichia coli population. PLoS One 2011 0.83
61 Gene expression scaled by distance to the genome replication site. Mol Biosyst 2013 0.83
62 Directed Evolution of Proteins through In Vitro Protein Synthesis in Liposomes. J Nucleic Acids 2012 0.83
63 Correlation between evolutionary structural development and protein folding. Proc Natl Acad Sci U S A 2005 0.83
64 Kinetic model of double-stranded RNA formation during long RNA replication by Qβ replicase. FEBS Lett 2013 0.83
65 Cell-free protein synthesis in a microchamber revealed the presence of an optimum compartment volume for high-order reactions. ACS Synth Biol 2013 0.83
66 Extracting characteristic properties of fitness landscape from in vitro molecular evolution: a case study on infectivity of fd phage to E.coli. J Theor Biol 2007 0.82
67 Kinetic analysis of the entire RNA amplification process by Qbeta replicase. J Biol Chem 2007 0.82
68 Identification of two forms of Q{beta} replicase with different thermal stabilities but identical RNA replication activity. J Biol Chem 2010 0.82
69 Dynamic change in promoter activation during lysine biosynthesis in Escherichia coli cells. Mol Biosyst 2007 0.82
70 Cell-free protein synthesis from a single copy of DNA in a glass microchamber. Lab Chip 2012 0.82
71 Kinetic analysis of β-galactosidase and β-glucuronidase tetramerization coupled with protein translation. J Biol Chem 2011 0.82
72 Development of a physical model-based algorithm for the detection of single-nucleotide substitutions by using tiling microarrays. PLoS One 2013 0.81
73 Bacterial cells carrying synthetic dual-function operon survived starvation. J Biomed Biotechnol 2011 0.80
74 Importance of compartment formation for a self-encoding system. Proc Natl Acad Sci U S A 2002 0.80
75 Development of a reporter peptide that catalytically produces a fluorescent signal through α-complementation. Protein Sci 2015 0.80
76 Direct visualization of DNA duplex formation on the surface of a giant liposome. Chembiochem 2003 0.79
77 Designing symbiosis. Bioeng Bugs 2011 0.78
78 Kinetic properties of Qbeta replicase, an RNA dependent RNA polymerase. J Biosci Bioeng 2002 0.78
79 History dependent effects on phenotypic expression of a newly emerged gene. Biosystems 2004 0.78
80 Statistical analysis of vesicle morphology dynamics based on a free energy landscape. Soft Matter 2014 0.78
81 α-Complementation in an artificial genome replication system in liposomes. Chembiochem 2012 0.78
82 Analysis of fluctuation in protein abundance without promoter regulation based on Escherichia coli continuous culture. Biosystems 2007 0.78
83 Construction of bacteria-eukaryote synthetic mutualism. Biosystems 2013 0.77
84 Phenotypic plasticity of Escherichia coli at initial stage of symbiosis with Dictyostelium discoideum. Biosystems 2007 0.77
85 Defined DNA-mediated assemblies of gene-expressing giant unilamellar vesicles. Langmuir 2013 0.77
86 Evolvability and single-genotype fluctuation in phenotypic properties: a simple heteropolymer model. Biophys J 2010 0.77
87 Effects of compartment size on the kinetics of intracompartmental multimeric protein synthesis. ACS Synth Biol 2012 0.77
88 Analysis of stochasticity in promoter activation by using a dual-fluorescence reporter system. Biosystems 2009 0.76
89 Probabilistic model based error correction in a set of various mutant sequences analyzed by next-generation sequencing. Comput Biol Chem 2013 0.76
90 Ribosome display for rapid protein evolution by consecutive rounds of mutation and selection. Methods Mol Biol 2010 0.76
91 Chapter 2 - Detection and analysis of protein synthesis and RNA replication in giant liposomes. Methods Enzymol 2009 0.76
92 Emergence of polyproline II-like structure at early stages of experimental evolution from random polypeptides. Mol Biol Evol 2008 0.76
93 A novel sequence-specific RNA quantification method using nicking endonuclease, dual-labeled fluorescent DNA probe, and conformation-interchangeable oligo-DNA. RNA 2008 0.76
94 Kinetic analysis of aptazyme-regulated gene expression in a cell-free translation system: modeling of ligand-dependent and -independent expression. RNA 2012 0.75
95 Transcriptome analysis of a microbial coculture in which the cell populations are separated by a membrane. Methods Mol Biol 2014 0.75
96 Evolutionary molecular engineering by random elongation mutagenesis. Methods Mol Biol 2002 0.75
97 Construction of synthetic gene circuits in the Escherichia coli genome. Methods Mol Biol 2013 0.75
98 In vitro selection of proteins that undergo covalent labeling with small molecules by thiol-disulfide exchange by using ribosome display. Chembiochem 2011 0.75
99 Effective selection system for experimental evolution of random polypeptides towards DNA-binding protein. J Biosci Bioeng 2007 0.75
100 Modification of an amplification reaction in recursively dynamic compartments driven by stirring. Anal Chem 2013 0.75
101 Global/temporal gene expression analysis of Escherichia coli in the early stages of symbiotic relationship development with the cellular slime mold Dictyostelium discoideum. Biosystems 2009 0.75
102 The evolutionary enhancement of genotype-phenotype linkages in the presence of multiple copies of genetic material. Chembiochem 2014 0.75
103 Global change in Escherichia coli gene expression in initial stage of symbiosis with Dictyostelium cells. Biosystems 2004 0.75
104 Packet Fragmentation and Reassembly in Molecular Communication. IEEE Trans Nanobioscience 2016 0.75
105 Evolution of carrying capacity in evolution experiments focusing on a single locus on the Escherichia coli chromosome. Biosystems 2008 0.75
106 Probabilistic transition from unstable predator-prey interaction to stable coexistence of Dictyostelium discoideum and Escherichia coli. Biosystems 2010 0.75