Published in J Mol Biol on July 05, 2002
Analyses of the effects of all ubiquitin point mutants on yeast growth rate. J Mol Biol (2013) 1.59
Protein structure, stability and solubility in water and other solvents. Philos Trans R Soc Lond B Biol Sci (2004) 1.25
Contribution of hydrophobic interactions to protein stability. J Mol Biol (2011) 1.22
Dry molten globule intermediates and the mechanism of protein unfolding. Proteins (2010) 1.11
Forces stabilizing proteins. FEBS Lett (2014) 0.93
Contribution of hydrogen bonds to protein stability. Protein Sci (2014) 0.92
Structural analysis of an HIV-1 protease I47A mutant resistant to the protease inhibitor lopinavir. Protein Sci (2005) 0.92
Correlation between amino acid residues converted by RNA editing and functional residues in protein three-dimensional structures in plant organelles. BMC Plant Biol (2008) 0.89
Dissecting the thermodynamics of GAP-RhoA interactions. J Struct Biol (2008) 0.86
On hydrophobicity and conformational specificity in proteins. Biophys J (2004) 0.86
Redistribution of flexibility in stabilizing antibody fragment mutants follows Le Châtelier's principle. PLoS One (2014) 0.85
A stability pattern of protein hydrophobic mutations that reflects evolutionary structural optimization. Biophys J (2005) 0.84
A method to rationally increase protein stability based on the charge-charge interaction, with application to lipase LipK107. Protein Sci (2013) 0.82
Protein-Protein Interactions Mediated by Helical Tertiary Structure Motifs. J Am Chem Soc (2015) 0.81
Approaches to the assignment of (19)F resonances from 3-fluorophenylalanine labeled calmodulin using solution state NMR. J Biomol NMR (2010) 0.81
Noncharged amino acid residues at the solvent-exposed positions in the middle and at the C terminus of the alpha-helix have the same helical propensity. Protein Sci (2003) 0.78
Unique COPII component AtSar1a/AtSec23a pair is required for the distinct function of protein ER export in Arabidopsis thaliana. Proc Natl Acad Sci U S A (2015) 0.78
Rigidity Emerges during Antibody Evolution in Three Distinct Antibody Systems: Evidence from QSFR Analysis of Fab Fragments. PLoS Comput Biol (2015) 0.77
RESOPS: a database for analyzing the correspondence of RNA editing sites to protein three-dimensional structures. Plant Cell Physiol (2009) 0.77
"Solvent hydrogen-bond occlusion": A new model of polar desolvation for biomolecular energetics. J Comput Chem (2017) 0.75
Physicochemical origin of high correlation between thermal stability of a protein and its packing efficiency: a theoretical study for staphylococcal nuclease mutants. Biophys Physicobiol (2015) 0.75
Molecular Determinants of Mutant Phenotypes, Inferred from Saturation Mutagenesis Data. Mol Biol Evol (2016) 0.75
Spontaneous intersubunit rotation in single ribosomes. Mol Cell (2008) 3.77
Following movement of the L1 stalk between three functional states in single ribosomes. Proc Natl Acad Sci U S A (2009) 2.40
Elongation factor G stabilizes the hybrid-state conformation of the 70S ribosome. RNA (2007) 1.86
Structural dynamics of the ribosome. Curr Opin Chem Biol (2008) 1.79
Protein stability and surface electrostatics: a charged relationship. Biochemistry (2006) 1.70
Dissecting the energetics of protein alpha-helix C-cap termination through chemical protein synthesis. Nat Chem Biol (2006) 1.68
Contribution of surface salt bridges to protein stability: guidelines for protein engineering. J Mol Biol (2003) 1.48
The enthalpy of the alanine peptide helix measured by isothermal titration calorimetry using metal-binding to induce helix formation. Proc Natl Acad Sci U S A (2002) 1.47
Rational stabilization of enzymes by computational redesign of surface charge-charge interactions. Proc Natl Acad Sci U S A (2009) 1.27
Unfolding thermodynamics of Trp-cage, a 20 residue miniprotein, studied by differential scanning calorimetry and circular dichroism spectroscopy. Biochemistry (2007) 1.24
Structure of the ribosome with elongation factor G trapped in the pretranslocation state. Proc Natl Acad Sci U S A (2013) 1.23
Enthalpy of helix-coil transition: missing link in rationalizing the thermodynamics of helix-forming propensities of the amino acid residues. Proc Natl Acad Sci U S A (2005) 1.11
Temperature dependence of the thermodynamics of helix-coil transition. J Mol Biol (2004) 1.10
Mechanism of fibril formation by a 39-residue peptide (PAPf39) from human prostatic acidic phosphatase. Biochemistry (2009) 1.09
Removal of surface charge-charge interactions from ubiquitin leaves the protein folded and very stable. Protein Sci (2002) 1.06
Role of the charge-charge interactions in defining stability and halophilicity of the CspB proteins. J Mol Biol (2006) 1.02
Computational design of the Fyn SH3 domain with increased stability through optimization of surface charge charge interactions. Protein Sci (2007) 1.01
Blasticidin S inhibits translation by trapping deformed tRNA on the ribosome. Proc Natl Acad Sci U S A (2013) 1.01
Total chemical synthesis and X-ray crystal structure of a protein diastereomer: [D-Gln 35]ubiquitin. Angew Chem Int Ed Engl (2005) 0.99
Naked mole-rat has increased translational fidelity compared with the mouse, as well as a unique 28S ribosomal RNA cleavage. Proc Natl Acad Sci U S A (2013) 0.99
Thermodynamics of the Trp-cage miniprotein unfolding in urea. Proteins (2010) 0.96
Structural basis for putrescine activation of human S-adenosylmethionine decarboxylase. Biochemistry (2008) 0.95
Protein stabilization by the rational design of surface charge-charge interactions. Methods Mol Biol (2009) 0.94
Molecular mechanism for the preferential exclusion of TMAO from protein surfaces. J Phys Chem B (2012) 0.93
Core sequence of PAPf39 amyloid fibrils and mechanism of pH-dependent fibril formation: the role of monomer conformation. Biochemistry (2012) 0.92
Cooperativity of complex salt bridges. Protein Sci (2008) 0.91
How to improve nature: study of the electrostatic properties of the surface of alpha-lactalbumin. Protein Eng Des Sel (2005) 0.90
Conformational dynamics and structural plasticity play critical roles in the ubiquitin recognition of a UIM domain. J Mol Biol (2010) 0.89
Conformational and thermodynamic properties of peptide binding to the human S100P protein. Protein Sci (2002) 0.89
Differential scanning calorimetry. Methods Mol Biol (2002) 0.89
Calorimetric evidence for a two-state unfolding of the beta-hairpin peptide trpzip4. J Am Chem Soc (2006) 0.88
Effects of charge-to-alanine substitutions on the stability of ribosomal protein L30e from Thermococcus celer. Biochemistry (2005) 0.88
Statistical analysis of protein structures suggests that buried ionizable residues in proteins are hydrogen bonded or form salt bridges. Proteins (2011) 0.87
Annexin I and annexin II N-terminal peptides binding to S100 protein family members: specificity and thermodynamic characterization. Biochemistry (2009) 0.87
Isothermal titration calorimetry. Methods Mol Biol (2002) 0.87
The role and specificity of the catalytic and regulatory cation-binding sites of the Na+-pumping NADH:quinone oxidoreductase from Vibrio cholerae. J Biol Chem (2011) 0.87
Universal convergence of the specific volume changes of globular proteins upon unfolding. Biochemistry (2009) 0.87
A computational approach for the rational design of stable proteins and enzymes: optimization of surface charge-charge interactions. Methods Enzymol (2009) 0.86
Crystal and NMR structures of a Trp-cage mini-protein benchmark for computational fold prediction. Proc Natl Acad Sci U S A (2012) 0.86
Kinetic consequences of native state optimization of surface-exposed electrostatic interactions in the Fyn SH3 domain. Proteins (2011) 0.85
Protonation/deprotonation effects on the stability of the Trp-cage miniprotein. Phys Chem Chem Phys (2011) 0.84
Pressure perturbation calorimetry of unfolded proteins. J Phys Chem B (2010) 0.84
Controlled gating and electrical detection of single 50S ribosomal subunits through a solid-state nanopore in a microfluidic chip. Biosens Bioelectron (2011) 0.83
Hydrophobic interactions at the Ccap position of the C-capping motif of alpha-helices. J Mol Biol (2002) 0.83
Elimination of the C-cap in ubiquitin - structure, dynamics and thermodynamic consequences. Biophys Chem (2006) 0.82
Enzyme activity in the crowded milieu. PLoS One (2012) 0.82
Energetics of charge-charge interactions between residues adjacent in sequence. Proteins (2011) 0.82
Modulation of quaternary structure of S100 proteins by calcium ions. Biophys Chem (2010) 0.82
Experimental test of the thermodynamic model of protein cooperativity using temperature-induced unfolding of a Ubq-UIM fusion protein. Biochemistry (2010) 0.81
NMR structure of the Apo-S100P protein. J Biomol NMR (2004) 0.80
Investigation of protein binding affinity in multimodal chromatographic systems using a homologous protein library. J Chromatogr A (2009) 0.80
Structural characterization of semen coagulum-derived SEM1(86-107) amyloid fibrils that enhance HIV-1 infection. Biochemistry (2014) 0.79
Electrostatic contribution of surface charge residues to the stability of a thermophilic protein: benchmarking experimental and predicted pKa values. PLoS One (2012) 0.79
Investigation of protein binding affinity and preferred orientations in ion exchange systems using a homologous protein library. Biotechnol Bioeng (2009) 0.79
Use of pressure perturbation calorimetry to characterize the volumetric properties of proteins. Methods Enzymol (2009) 0.78
Backtracking due to residual structure in the unfolded state changes the folding of the third fibronectin type III domain from tenascin-C. J Phys Chem B (2013) 0.78
Bacterial expression and purification of the amyloidogenic peptide PAPf39 for multidimensional NMR spectroscopy. Protein Expr Purif (2013) 0.78
Noncharged amino acid residues at the solvent-exposed positions in the middle and at the C terminus of the alpha-helix have the same helical propensity. Protein Sci (2003) 0.78
Amino acid substitutions affecting protein dynamics in eglin C do not affect heat capacity change upon unfolding. Proteins (2006) 0.77
Novel interactions of the TRTK12 peptide with S100 protein family members: specificity and thermodynamic characterization. Biochemistry (2013) 0.77
Equilibrium and kinetic studies of protein cooperativity using urea-induced folding/unfolding of a Ubq-UIM fusion protein. Biophys Chem (2011) 0.77
The role of cross-chain ionic interactions for the stability of collagen model peptides. Biophys J (2013) 0.77
Thermodynamic and kinetic analysis of peptides derived from CapZ, NDR, p53, HDM2, and HDM4 binding to human S100B. Biochemistry (2012) 0.77
Molecular determinants of expansivity of native globular proteins: a pressure perturbation calorimetry study. J Phys Chem B (2014) 0.77
Structural and thermodynamic characterization of the recognition of the S100-binding peptides TRTK12 and p53 by calmodulin. Protein Sci (2014) 0.75
Alterations of Nonconserved Residues Affect Protein Stability and Folding Dynamics through Charge-Charge Interactions. J Phys Chem B (2015) 0.75
Advances in the analysis of conformational transitions in peptides using differential scanning calorimetry. Methods Mol Biol (2007) 0.75
Molecular Determinants of Temperature Dependence of Protein Volume Change upon Unfolding. J Phys Chem B (2017) 0.75
Both helical propensity and side-chain hydrophobicity at a partially exposed site in alpha-helix contribute to the thermodynamic stability of ubiquitin. Proteins (2005) 0.75