Published in EMBO J on October 01, 2002
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Cluster analysis of mass spectrometry data reveals a novel component of SAGA. Mol Cell Biol (2004) 2.22
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Genome-wide location of the coactivator mediator: Binding without activation and transient Cdk8 interaction on DNA. Mol Cell (2006) 2.16
A high resolution protein interaction map of the yeast Mediator complex. Nucleic Acids Res (2004) 2.15
The specificity and topology of chromatin interaction pathways in yeast. Mol Cell (2011) 2.04
Identification of a ubiquitin-protein ligase subunit within the CCR4-NOT transcription repressor complex. EMBO J (2002) 1.98
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A central role for TFIID in the pluripotent transcription circuitry. Nature (2013) 1.82
Structural insight into the recognition of the H3K4me3 mark by the TFIID subunit TAF3. Structure (2008) 1.72
Human Ccr4-Not complex is a ligand-dependent repressor of nuclear receptor-mediated transcription. EMBO J (2006) 1.69
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Not1 mediates recruitment of the deadenylase Caf1 to mRNAs targeted for degradation by tristetraprolin. Nucleic Acids Res (2011) 1.57
Gene expression profiling of early intervertebral disc degeneration reveals a down-regulation of canonical Wnt signaling and caveolin-1 expression: implications for development of regenerative strategies. Arthritis Res Ther (2013) 1.57
Distinct promoter dynamics of the basal transcription factor TBP across the yeast genome. Nat Struct Mol Biol (2009) 1.56
In control: systematic assessment of microarray performance. EMBO Rep (2004) 1.55
The use of biotin tagging in Saccharomyces cerevisiae improves the sensitivity of chromatin immunoprecipitation. Nucleic Acids Res (2006) 1.47
Molecular characterization of Saccharomyces cerevisiae TFIID. Mol Cell Biol (2002) 1.46
A comprehensive framework of E2-RING E3 interactions of the human ubiquitin-proteasome system. Mol Syst Biol (2009) 1.43
Redox-sensitive cysteines bridge p300/CBP-mediated acetylation and FoxO4 activity. Nat Chem Biol (2009) 1.40
Mapping key functional sites within yeast TFIID. EMBO J (2004) 1.38
Cooperative action of NC2 and Mot1p to regulate TATA-binding protein function across the genome. Genes Dev (2008) 1.38
ATAC-king the complexity of SAGA during evolution. Genes Dev (2012) 1.36
Mapping histone fold TAFs within yeast TFIID. EMBO J (2002) 1.33
Yeast TFIID serves as a coactivator for Rap1p by direct protein-protein interaction. Mol Cell Biol (2006) 1.31
Multiple robust signatures for detecting lymph node metastasis in head and neck cancer. Cancer Res (2006) 1.27
E2F7 represses a network of oscillating cell cycle genes to control S-phase progression. Nucleic Acids Res (2011) 1.26
Regulation of histone H3K4 tri-methylation and PAF complex recruitment by the Ccr4-Not complex. Nucleic Acids Res (2007) 1.23
Two distinct repressive mechanisms for histone 3 lysine 4 methylation through promoting 3'-end antisense transcription. PLoS Genet (2012) 1.21
Predicting gene function through systematic analysis and quality assessment of high-throughput data. Bioinformatics (2004) 1.21
Gcn4 misregulation reveals a direct role for the evolutionary conserved EKC/KEOPS in the t6A modification of tRNAs. Nucleic Acids Res (2011) 1.20
A consensus of core protein complex compositions for Saccharomyces cerevisiae. Mol Cell (2010) 1.19
Comparing genome-wide chromatin profiles using ChIP-chip or ChIP-seq. Bioinformatics (2010) 1.18
DNA damage and replication stress induced transcription of RNR genes is dependent on the Ccr4-Not complex. Nucleic Acids Res (2005) 1.17
Quantitative proteomics reveals regulation of dynamic components within TATA-binding protein (TBP) transcription complexes. Mol Cell Proteomics (2007) 1.17
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New insights into the function of transcription factor TFIID from recent structural studies. Curr Opin Genet Dev (2011) 1.15
An altered-specificity ubiquitin-conjugating enzyme/ubiquitin-protein ligase pair. J Mol Biol (2004) 1.15
Chromatin interaction of TATA-binding protein is dynamically regulated in human cells. J Cell Sci (2010) 1.14
Roles for BTAF1 and Mot1p in dynamics of TATA-binding protein and regulation of RNA polymerase II transcription. Gene (2003) 1.13
Dubbing SAGA unveils new epigenetic crosstalk. Mol Cell (2008) 1.12
TFIIA and the transactivator Rap1 cooperate to commit TFIID for transcription initiation. Nature (2010) 1.12
PDGFRB promotes liver metastasis formation of mesenchymal-like colorectal tumor cells. Neoplasia (2013) 1.11
Adaptable gene-specific dye bias correction for two-channel DNA microarrays. Mol Syst Biol (2009) 1.09
Use of a genetically introduced cross-linker to identify interaction sites of acidic activators within native transcription factor IID and SAGA. J Biol Chem (2002) 1.08
Improved genome-wide localization by ChIP-chip using double-round T7 RNA polymerase-based amplification. Nucleic Acids Res (2008) 1.07
Modulation of Ubc4p/Ubc5p-mediated stress responses by the RING-finger-dependent ubiquitin-protein ligase Not4p in Saccharomyces cerevisiae. Genetics (2007) 1.05
Distinct role of Mediator tail module in regulation of SAGA-dependent, TATA-containing genes in yeast. EMBO J (2011) 1.05
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Critical roles for a genetic code alteration in the evolution of the genus Candida. EMBO J (2007) 1.04
Direct transactivator-transcription factor IID (TFIID) contacts drive yeast ribosomal protein gene transcription. J Biol Chem (2010) 1.04
Balancing of histone H3K4 methylation states by the Kdm5c/SMCX histone demethylase modulates promoter and enhancer function. Cell Rep (2013) 1.03
Distinct mutations in yeast TAF(II)25 differentially affect the composition of TFIID and SAGA complexes as well as global gene expression patterns. Mol Cell Biol (2002) 1.03
Possible role of the innate immunity in temporal lobe epilepsy. Epilepsia (2007) 1.03
Structure-system correlation identifies a gene regulatory Mediator submodule. Genes Dev (2008) 1.03
A method for plasmid purification directly from yeast. Anal Biochem (2002) 1.03
Benchmarking stable isotope labeling based quantitative proteomics. J Proteomics (2012) 1.02
Mapping the initiator binding Taf2 subunit in the structure of hydrated yeast TFIID. Structure (2009) 1.01
Solution structure of the ubiquitin-conjugating enzyme UbcH5B. J Mol Biol (2004) 1.00
Tight control of MEK-ERK activation is essential in regulating proliferation, survival, and cytokine production of CD34+-derived neutrophil progenitors. Blood (2009) 1.00
Maintenance of head and neck tumor gene expression profiles upon lymph node metastasis. Cancer Res (2006) 0.99
Gene expression profiling and phenotype analyses of S. cerevisiae in response to changing copper reveals six genes with new roles in copper and iron metabolism. Physiol Genomics (2005) 0.98
Retinoic acid-dependent and -independent gene-regulatory pathways of Pitx3 in meso-diencephalic dopaminergic neurons. Development (2011) 0.98
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Specification of dopaminergic subsets involves interplay of En1 and Pitx3. Development (2013) 0.96
A role for BAF57 in cell cycle-dependent transcriptional regulation by the SWI/SNF chromatin remodeling complex. Cancer Res (2010) 0.95
The TATA box regulates TATA-binding protein (TBP) dynamics in vivo. Trends Biochem Sci (2010) 0.95
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A proteomics analysis of yeast Mot1p protein-protein associations: insights into mechanism. Mol Cell Proteomics (2008) 0.93
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Regulation of gene expression by dietary Ca2+ in kidneys of 25-hydroxyvitamin D3-1 alpha-hydroxylase knockout mice. Kidney Int (2004) 0.91
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Functional analysis of the TFIID-specific yeast TAF4 (yTAF(II)48) reveals an unexpected organization of its histone-fold domain. J Biol Chem (2002) 0.90
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