Published in J Mol Biol on October 11, 2002
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Whole-genome comparison of Leu3 binding in vitro and in vivo reveals the importance of nucleosome occupancy in target site selection. Genome Res (2006) 2.63
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Nutritional homeostasis in batch and steady-state culture of yeast. Mol Biol Cell (2004) 2.15
DIP-chip: rapid and accurate determination of DNA-binding specificity. Genome Res (2005) 1.91
Identification of cis elements directing termination of yeast nonpolyadenylated snoRNA transcripts. Mol Cell Biol (2004) 1.81
Leucine biosynthesis in fungi: entering metabolism through the back door. Microbiol Mol Biol Rev (2003) 1.66
Algorithm for prediction of tumour suppressor p53 affinity for binding sites in DNA. Nucleic Acids Res (2008) 1.58
Predicting functional transcription factor binding through alignment-free and affinity-based analysis of orthologous promoter sequences. Bioinformatics (2008) 1.34
A global view of the selection forces in the evolution of yeast cis-regulation. Genome Res (2004) 1.21
The development of protein microarrays and their applications in DNA-protein and protein-protein interaction analyses of Arabidopsis transcription factors. Mol Plant (2007) 1.05
Correlation between binding rate constants and individual information of E. coli Fis binding sites. Nucleic Acids Res (2007) 1.02
Iron regulation through the back door: iron-dependent metabolite levels contribute to transcriptional adaptation to iron deprivation in Saccharomyces cerevisiae. Eukaryot Cell (2009) 0.96
Combined analysis of expression data and transcription factor binding sites in the yeast genome. BMC Genomics (2004) 0.95
Detecting cis-regulatory binding sites for cooperatively binding proteins. Nucleic Acids Res (2008) 0.90
Inferring direct regulatory targets from expression and genome location analyses: a comparison of transcription factor deletion and overexpression. BMC Genomics (2006) 0.88
Accurate prediction of gene expression by integration of DNA sequence statistics with detailed modeling of transcription regulation. Biophys J (2010) 0.84
Nucleosomal context of binding sites influences transcription factor binding affinity and gene regulation. Genomics Proteomics Bioinformatics (2009) 0.80
Bayesian analysis of high-throughput quantitative measurement of protein-DNA interactions. PLoS One (2011) 0.79
Pharmacological manipulation of transcription factor protein-protein interactions: opportunities and obstacles. Cell Regen (Lond) (2015) 0.77
Reconstructing transcriptional regulatory networks through genomics data. Stat Methods Med Res (2009) 0.77
Most transcription factor binding sites are in a few mosaic classes of the human genome. BMC Genomics (2010) 0.76
Total Binding Affinity Profiles of Regulatory Regions Predict Transcription Factor Binding and Gene Expression in Human Cells. PLoS One (2015) 0.76
Insights into distinct regulatory modes of nucleosome positioning. BMC Genomics (2009) 0.75
Integration of external signaling pathways with the core transcriptional network in embryonic stem cells. Cell (2008) 28.29
Resolution of cell fate decisions revealed by single-cell gene expression analysis from zygote to blastocyst. Dev Cell (2010) 6.24
Towards a rigorous assessment of systems biology models: the DREAM3 challenges. PLoS One (2010) 4.94
A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters. Mol Cell (2008) 4.49
Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity. Genome Res (2011) 4.43
A genome-wide RNAi screen reveals determinants of human embryonic stem cell identity. Nature (2010) 3.84
Automated server predictions in CASP7. Proteins (2007) 3.40
DNA binding and nucleotide flipping by the human DNA repair protein AGT. Nat Struct Mol Biol (2004) 2.86
Whole-genome comparison of Leu3 binding in vitro and in vivo reveals the importance of nucleosome occupancy in target site selection. Genome Res (2006) 2.63
Explicit equilibrium modeling of transcription-factor binding and gene regulation. Genome Biol (2005) 2.50
Integrative model of genomic factors for determining binding site selection by estrogen receptor-α. Mol Syst Biol (2010) 2.04
Assessment of CASP7 structure predictions for template free targets. Proteins (2007) 1.98
DIP-chip: rapid and accurate determination of DNA-binding specificity. Genome Res (2005) 1.91
Evaluating methods for isolating total RNA and predicting the success of sequencing phylogenetically diverse plant transcriptomes. PLoS One (2012) 1.82
Identification of cis elements directing termination of yeast nonpolyadenylated snoRNA transcripts. Mol Cell Biol (2004) 1.81
Control of transcription through intragenic patterns of nucleosome composition. Cell (2005) 1.77
Assessment of intramolecular contact predictions for CASP7. Proteins (2007) 1.40
Dynamic deposition of histone variant H3.3 accompanies developmental remodeling of the Arabidopsis transcriptome. PLoS Genet (2012) 1.11
Inferring direct regulatory targets of a transcription factor in the DREAM2 challenge. Ann N Y Acad Sci (2009) 0.94
Blurring of high-resolution data shows that the effect of intrinsic nucleosome occupancy on transcription factor binding is mostly regional, not local. PLoS Comput Biol (2010) 0.94
Inferring direct regulatory targets from expression and genome location analyses: a comparison of transcription factor deletion and overexpression. BMC Genomics (2006) 0.88
Including stretches to a massage routine improves recovery from official matches in basketball players. J Strength Cond Res (2014) 0.84
Differential binding of the related transcription factors Pho4 and Cbf1 can tune the sensitivity of promoters to different levels of an induction signal. Nucleic Acids Res (2013) 0.80
Inferring transcription factor targets from gene expression changes and predicted promoter occupancy. J Comput Biol (2009) 0.80
Effect of Coffee and Caffeine Ingestion on Resistance Exercise Performance. J Strength Cond Res (2016) 0.75