Published in PLoS Comput Biol on January 22, 2010
Nucleosome fragility reveals novel functional states of chromatin and poises genes for activation. Genome Res (2011) 1.58
Multiple sequence-specific factors generate the nucleosome-depleted region on CLN2 promoter. Mol Cell (2011) 1.49
Extensive role of the general regulatory factors, Abf1 and Rap1, in determining genome-wide chromatin structure in budding yeast. Nucleic Acids Res (2010) 1.48
Dynamic nucleosome-depleted regions at androgen receptor enhancers in the absence of ligand in prostate cancer cells. Mol Cell Biol (2011) 1.34
Remodelers organize cellular chromatin by counteracting intrinsic histone-DNA sequence preferences in a class-specific manner. Mol Cell Biol (2011) 1.19
Nucleosome repositioning links DNA (de)methylation and differential CTCF binding during stem cell development. Genome Res (2014) 1.09
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Deconstructing the genetic basis of spent sulphite liquor tolerance using deep sequencing of genome-shuffled yeast. Biotechnol Biofuels (2015) 0.80
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Genome-wide map of nucleosome acetylation and methylation in yeast. Cell (2005) 15.08
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Sequence periodicities in chicken nucleosome core DNA. J Mol Biol (1986) 8.84
The structure of DNA in the nucleosome core. Nature (2003) 7.94
A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome. Genome Res (2008) 7.89
FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin. Genome Res (2006) 7.72
Dynamics of replication-independent histone turnover in budding yeast. Science (2007) 6.41
DNA bending and its relation to nucleosome positioning. J Mol Biol (1985) 6.18
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Nucleosome positioning signals in genomic DNA. Genome Res (2007) 4.99
Mechanisms that specify promoter nucleosome location and identity. Cell (2009) 4.14
Histone replacement marks the boundaries of cis-regulatory domains. Science (2007) 4.06
Extensive low-affinity transcriptional interactions in the yeast genome. Genome Res (2006) 3.67
Genomic sequence is highly predictive of local nucleosome depletion. PLoS Comput Biol (2007) 3.24
Collaborative competition mechanism for gene activation in vivo. Mol Cell Biol (2003) 3.10
Whole-genome comparison of Leu3 binding in vitro and in vivo reveals the importance of nucleosome occupancy in target site selection. Genome Res (2006) 2.63
Explicit equilibrium modeling of transcription-factor binding and gene regulation. Genome Biol (2005) 2.50
A nucleosome-guided map of transcription factor binding sites in yeast. PLoS Comput Biol (2007) 2.15
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Rank order metrics for quantifying the association of sequence features with gene regulation. Bioinformatics (2003) 1.30
Energetics and affinity of the histone octamer for defined DNA sequences. Biochemistry (2001) 1.12
Integration of external signaling pathways with the core transcriptional network in embryonic stem cells. Cell (2008) 28.29
Large-scale genotyping identifies 41 new loci associated with breast cancer risk. Nat Genet (2013) 8.24
Resolution of cell fate decisions revealed by single-cell gene expression analysis from zygote to blastocyst. Dev Cell (2010) 6.24
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GWAS of 126,559 individuals identifies genetic variants associated with educational attainment. Science (2013) 4.71
A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters. Mol Cell (2008) 4.49
Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity. Genome Res (2011) 4.43
Multiple independent variants at the TERT locus are associated with telomere length and risks of breast and ovarian cancer. Nat Genet (2013) 4.35
A genome-wide RNAi screen reveals determinants of human embryonic stem cell identity. Nature (2010) 3.84
Automated server predictions in CASP7. Proteins (2007) 3.40
DNA binding and nucleotide flipping by the human DNA repair protein AGT. Nat Struct Mol Biol (2004) 2.86
Whole-genome comparison of Leu3 binding in vitro and in vivo reveals the importance of nucleosome occupancy in target site selection. Genome Res (2006) 2.63
Explicit equilibrium modeling of transcription-factor binding and gene regulation. Genome Biol (2005) 2.50
Functional variants at the 11q13 risk locus for breast cancer regulate cyclin D1 expression through long-range enhancers. Am J Hum Genet (2013) 2.24
Integrative model of genomic factors for determining binding site selection by estrogen receptor-α. Mol Syst Biol (2010) 2.04
Assessment of CASP7 structure predictions for template free targets. Proteins (2007) 1.98
DIP-chip: rapid and accurate determination of DNA-binding specificity. Genome Res (2005) 1.91
Genome-wide association study identifies a common variant associated with risk of endometrial cancer. Nat Genet (2011) 1.84
Evaluating methods for isolating total RNA and predicting the success of sequencing phylogenetically diverse plant transcriptomes. PLoS One (2012) 1.82
Identification of cis elements directing termination of yeast nonpolyadenylated snoRNA transcripts. Mol Cell Biol (2004) 1.81
Common variants in ZNF365 are associated with both mammographic density and breast cancer risk. Nat Genet (2011) 1.77
Control of transcription through intragenic patterns of nucleosome composition. Cell (2005) 1.77
High-throughput mammographic-density measurement: a tool for risk prediction of breast cancer. Breast Cancer Res (2012) 1.63
Rationalization of gene regulation by a eukaryotic transcription factor: calculation of regulatory region occupancy from predicted binding affinities. J Mol Biol (2002) 1.60
Digital mammographic density and breast cancer risk: a case-control study of six alternative density assessment methods. Breast Cancer Res (2014) 1.48
Assessment of intramolecular contact predictions for CASP7. Proteins (2007) 1.40
Fine-scale mapping of the FGFR2 breast cancer risk locus: putative functional variants differentially bind FOXA1 and E2F1. Am J Hum Genet (2013) 1.39
CHEK2*1100delC heterozygosity in women with breast cancer associated with early death, breast cancer-specific death, and increased risk of a second breast cancer. J Clin Oncol (2012) 1.29
Common breast cancer susceptibility variants in LSP1 and RAD51L1 are associated with mammographic density measures that predict breast cancer risk. Cancer Epidemiol Biomarkers Prev (2012) 1.26
Dynamic deposition of histone variant H3.3 accompanies developmental remodeling of the Arabidopsis transcriptome. PLoS Genet (2012) 1.11
Mammographic breast density and breast cancer: evidence of a shared genetic basis. Cancer Res (2012) 1.03
A large-scale assessment of two-way SNP interactions in breast cancer susceptibility using 46,450 cases and 42,461 controls from the breast cancer association consortium. Hum Mol Genet (2013) 1.00
Change of mammographic density predicts the risk of contralateral breast cancer--a case-control study. Breast Cancer Res (2013) 0.97
9q31.2-rs865686 as a susceptibility locus for estrogen receptor-positive breast cancer: evidence from the Breast Cancer Association Consortium. Cancer Epidemiol Biomarkers Prev (2012) 0.95
Inferring direct regulatory targets of a transcription factor in the DREAM2 challenge. Ann N Y Acad Sci (2009) 0.94
BRCA2 Polymorphic Stop Codon K3326X and the Risk of Breast, Prostate, and Ovarian Cancers. J Natl Cancer Inst (2015) 0.90
Investigation of gene-environment interactions between 47 newly identified breast cancer susceptibility loci and environmental risk factors. Int J Cancer (2014) 0.90
Candidate locus analysis of the TERT-CLPTM1L cancer risk region on chromosome 5p15 identifies multiple independent variants associated with endometrial cancer risk. Hum Genet (2014) 0.89
Sequence analysis of the Meq gene in the predominant Marek's disease virus strains isolated in China during 2006-2008. Virus Genes (2011) 0.89
Identification of a novel percent mammographic density locus at 12q24. Hum Mol Genet (2012) 0.88
Inferring direct regulatory targets from expression and genome location analyses: a comparison of transcription factor deletion and overexpression. BMC Genomics (2006) 0.88
Identification of new genetic susceptibility loci for breast cancer through consideration of gene-environment interactions. Genet Epidemiol (2013) 0.86
Including stretches to a massage routine improves recovery from official matches in basketball players. J Strength Cond Res (2014) 0.84
The UGT1A6_19_GG genotype is a breast cancer risk factor. Front Genet (2013) 0.82
CYP2B6*6 is associated with increased breast cancer risk. Int J Cancer (2013) 0.82
Site-directed mutagenesis of substrate binding sites of azoreductase from Rhodobacter sphaeroides. Biotechnol Lett (2007) 0.81
Genome wide analysis reveals Zic3 interaction with distal regulatory elements of stage specific developmental genes in zebrafish. PLoS Genet (2013) 0.81
Association of CYP2D6 metabolizer status with mammographic density change in response to tamoxifen treatment. Breast Cancer Res (2013) 0.81
Inferring transcription factor targets from gene expression changes and predicted promoter occupancy. J Comput Biol (2009) 0.80
Differential binding of the related transcription factors Pho4 and Cbf1 can tune the sensitivity of promoters to different levels of an induction signal. Nucleic Acids Res (2013) 0.80
Assessment of variation in immunosuppressive pathway genes reveals TGFBR2 to be associated with prognosis of estrogen receptor-negative breast cancer after chemotherapy. Breast Cancer Res (2015) 0.79
Confirmation of the reduction of hormone replacement therapy-related breast cancer risk for carriers of the HSD17B1_937_G variant. Breast Cancer Res Treat (2013) 0.78
Tolerability and safety of topiramate in Chinese patients with epilepsy : an open-label, long-term, prospective study. Clin Drug Investig (2007) 0.76
The postmenopausal hormone replacement therapy-related breast cancer risk is decreased in women carrying the CYP2C19*17 variant. Breast Cancer Res Treat (2011) 0.76
No evidence for association of inherited variation in genes involved in mitosis and percent mammographic density. Breast Cancer Res (2012) 0.75
Effect of Coffee and Caffeine Ingestion on Resistance Exercise Performance. J Strength Cond Res (2016) 0.75
Foodborne outbreak associated with Escherichia coli O112ac:H19 in China. Jpn J Infect Dis (2014) 0.75
Correction: Homology analysis of malware based on ensemble learning and multifeatures. PLoS One (2019) 0.75
Corrigendum: Genome-wide association study identifies multiple loci associated with both mammographic density and breast cancer risk. Nat Commun (2015) 0.75
Identification of lactic acid bacteria in salted Chinese cabbage by SDS-PAGE and PCR-DGGE. J Sci Food Agric (2013) 0.75