PubRank

Naotake Ogasawara

Author PubWeight™ 114.16‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 Sequence-specific error profile of Illumina sequencers. Nucleic Acids Res 2011 6.88
2 Genome sequencing and analysis of Aspergillus oryzae. Nature 2005 5.47
3 Complete genome sequence of Clostridium perfringens, an anaerobic flesh-eater. Proc Natl Acad Sci U S A 2002 5.40
4 Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D. Nature 2004 5.08
5 DBTBS: database of transcriptional regulation in Bacillus subtilis and its contribution to comparative genomics. Nucleic Acids Res 2004 2.61
6 A widespread family of bacterial cell wall assembly proteins. EMBO J 2011 2.33
7 Escherichia coli histone-like protein H-NS preferentially binds to horizontally acquired DNA in association with RNA polymerase. DNA Res 2006 2.11
8 Discovery of two novel families of proteins that are proposed to interact with prokaryotic SMC proteins, and characterization of the Bacillus subtilis family members ScpA and ScpB. Mol Microbiol 2002 2.06
9 A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO. Science 2003 2.03
10 Whole-genome analysis of genes regulated by the Bacillus subtilis competence transcription factor ComK. J Bacteriol 2002 2.01
11 An RNA-modifying enzyme that governs both the codon and amino acid specificities of isoleucine tRNA. Mol Cell 2003 1.90
12 Six GTP-binding proteins of the Era/Obg family are essential for cell growth in Bacillus subtilis. Microbiology 2002 1.76
13 Zinc is a key factor in controlling alternation of two types of L31 protein in the Bacillus subtilis ribosome. Mol Microbiol 2004 1.65
14 Proteomics characterization of novel spore proteins of Bacillus subtilis. Microbiology 2002 1.61
15 The BceRS two-component regulatory system induces expression of the bacitracin transporter, BceAB, in Bacillus subtilis. Mol Microbiol 2003 1.58
16 Noc protein binds to specific DNA sequences to coordinate cell division with chromosome segregation. EMBO J 2009 1.56
17 A new FtsZ-interacting protein, YlmF, complements the activity of FtsA during progression of cell division in Bacillus subtilis. Mol Microbiol 2006 1.49
18 Binding of response regulator DegU to the aprE promoter is inhibited by RapG, which is counteracted by extracellular PhrG in Bacillus subtilis. Mol Microbiol 2003 1.47
19 Identification of a protein, YneA, responsible for cell division suppression during the SOS response in Bacillus subtilis. Mol Microbiol 2003 1.47
20 Distribution of stable DnaA-binding sites on the Bacillus subtilis genome detected using a modified ChIP-chip method. DNA Res 2007 1.37
21 Inferring gene regulatory networks from time-ordered gene expression data of Bacillus subtilis using differential equations. Pac Symp Biocomput 2003 1.34
22 Enhanced recombinant protein productivity by genome reduction in Bacillus subtilis. DNA Res 2008 1.32
23 The GTP-binding protein YlqF participates in the late step of 50 S ribosomal subunit assembly in Bacillus subtilis. J Biol Chem 2006 1.32
24 Genome-wide binding profiles of the Bacillus subtilis transition state regulator AbrB and its homolog Abh reveals their interactive role in transcriptional regulation. Nucleic Acids Res 2010 1.30
25 Global regulation by horizontally transferred regulators establishes the pathogenicity of Escherichia coli. DNA Res 2008 1.27
26 Synergistic regulation of competence development in Bacillus subtilis by two Rap-Phr systems. J Bacteriol 2005 1.27
27 A complete set of Escherichia coli open reading frames in mobile plasmids facilitating genetic studies. DNA Res 2005 1.26
28 Bacillus minimum genome factory: effective utilization of microbial genome information. Biotechnol Appl Biochem 2007 1.25
29 Systematic analysis of SigD-regulated genes in Bacillus subtilis by DNA microarray and Northern blotting analyses. Gene 2004 1.22
30 Escherichia coli with a linear genome. EMBO Rep 2007 1.16
31 Bacillus subtilis RghR (YvaN) represses rapG and rapH, which encode inhibitors of expression of the srfA operon. Mol Microbiol 2006 1.09
32 Increasing the ratio of Soj to Spo0J promotes replication initiation in Bacillus subtilis. J Bacteriol 2003 1.09
33 Bacillus subtilis YabA is involved in determining the timing and synchrony of replication initiation. FEMS Microbiol Lett 2005 1.08
34 Cloning and characterization of mevalonate pathway genes in a natural rubber producing plant, Hevea brasiliensis. Biosci Biotechnol Biochem 2008 1.08
35 The Bacillus subtilis YufLM two-component system regulates the expression of the malate transporters MaeN (YufR) and YflS, and is essential for utilization of malate in minimal medium. Microbiology 2003 1.06
36 spoIVH (ykvV), a requisite cortex formation gene, is expressed in both sporulating compartments of Bacillus subtilis. J Bacteriol 2004 1.06
37 Transcriptional, functional and cytochemical analyses of the veg gene in Bacillus subtilis. J Biochem 2003 1.05
38 Bacillus subtilis EzrA and FtsL synergistically regulate FtsZ ring dynamics during cell division. Microbiology 2006 1.05
39 Characterization of relationships between transcriptional units and operon structures in Bacillus subtilis and Escherichia coli. BMC Genomics 2007 1.05
40 Metabolomics approach for determining growth-specific metabolites based on Fourier transform ion cyclotron resonance mass spectrometry. Anal Bioanal Chem 2008 1.04
41 The functional analysis of YabA, which interacts with DnaA and regulates initiation of chromosome replication in Bacillus subtils. Genes Genet Syst 2008 1.04
42 The GTP-binding protein YqeH participates in biogenesis of the 30S ribosome subunit in Bacillus subtilis. Genes Genet Syst 2007 1.03
43 Large ring polymers align FtsZ polymers for normal septum formation. EMBO J 2011 1.03
44 The phylogenetic position of red algae revealed by multiple nuclear genes from mitochondria-containing eukaryotes and an alternative hypothesis on the origin of plastids. J Mol Evol 2003 1.03
45 Functional analysis of the YvrGHb two-component system of Bacillus subtilis: identification of the regulated genes by DNA microarray and northern blot analyses. Biosci Biotechnol Biochem 2005 1.02
46 Two separate DNA sequences within oriC participate in accurate chromosome segregation in Bacillus subtilis. Mol Microbiol 2002 1.02
47 Structural and genetic analyses reveal the protein SepF as a new membrane anchor for the Z ring. Proc Natl Acad Sci U S A 2013 1.00
48 The H2O2 stress-responsive regulator PerR positively regulates srfA expression in Bacillus subtilis. J Bacteriol 2005 0.99
49 Differential binding profiles of StpA in wild-type and h-ns mutant cells: a comparative analysis of cooperative partners by chromatin immunoprecipitation-microarray analysis. J Bacteriol 2009 0.98
50 Reassessment of the in vivo functions of DNA polymerase I and RNase H in bacterial cell growth. J Bacteriol 2007 0.97
51 A new simple method to introduce marker-free deletions in the Bacillus subtilis genome. Genes Genet Syst 2009 0.96
52 Introduction of marker-free deletions in Bacillus subtilis using the AraR repressor and the ara promoter. Microbiology 2008 0.96
53 Molecular strategy for survival at a critical high temperature in Eschierichia coli. PLoS One 2011 0.95
54 Involvement of the YneS/YgiH and PlsX proteins in phospholipid biosynthesis in both Bacillus subtilis and Escherichia coli. BMC Microbiol 2007 0.94
55 Cloning and characterization of the 2-C-methyl-D-erythritol 4-phosphate (MEP) pathway genes of a natural-rubber producing plant, Hevea brasiliensis. Biosci Biotechnol Biochem 2008 0.94
56 Expression of a small (p)ppGpp synthetase, YwaC, in the (p)ppGpp(0) mutant of Bacillus subtilis triggers YvyD-dependent dimerization of ribosome. Microbiologyopen 2012 0.93
57 Mutation in yaaT leads to significant inhibition of phosphorelay during sporulation in Bacillus subtilis. J Bacteriol 2002 0.92
58 Isolation and characterization of a dominant negative mutant of Bacillus subtilis GTP-binding protein, YlqF, essential for biogenesis and maintenance of the 50 S ribosomal subunit. J Biol Chem 2007 0.91
59 Anaerobic regulation of citrate fermentation by CitAB in Escherichia coli. Biosci Biotechnol Biochem 2008 0.91
60 Effects on transcription of mutations in ygjD, yeaZ, and yjeE genes, which are involved in a universal tRNA modification in Escherichia coli. J Bacteriol 2011 0.91
61 Regulation of chromosomal replication initiation by oriC-proximal DnaA-box clusters in Bacillus subtilis. Nucleic Acids Res 2011 0.90
62 Assessment of transcriptional responses of Bacillus subtilis cells to the antibiotic enduracidin, which interferes with cell wall synthesis, using a high-density tiling chip. Genes Genet Syst 2009 0.90
63 Dynamics of time-lagged gene-to-metabolite networks of Escherichia coli elucidated by integrative omics approach. OMICS 2010 0.90
64 Combined effect of improved cell yield and increased specific productivity enhances recombinant enzyme production in genome-reduced Bacillus subtilis strain MGB874. Appl Environ Microbiol 2011 0.88
65 Bacillus subtilis spoVIF (yjcC) gene, involved in coat assembly and spore resistance. Microbiology 2003 0.88
66 Transcription factor GreA contributes to resolving promoter-proximal pausing of RNA polymerase in Bacillus subtilis cells. J Bacteriol 2011 0.86
67 High external pH enables more efficient secretion of alkaline α-amylase AmyK38 by Bacillus subtilis. Microb Cell Fact 2012 0.85
68 Characterization of CitA-CitB signal transduction activating genes involved in anaerobic citrate catabolism in Escherichia coli. Biosci Biotechnol Biochem 2009 0.84
69 RNA polymerase trafficking in Bacillus subtilis cells. J Bacteriol 2010 0.84
70 The entire organization of transcription units on the Bacillus subtilis genome. BMC Genomics 2007 0.84
71 Genetic manipulations restored the growth fitness of reduced-genome Escherichia coli. J Biosci Bioeng 2013 0.83
72 AMDORAP: non-targeted metabolic profiling based on high-resolution LC-MS. BMC Bioinformatics 2011 0.83
73 yaaD and yaaE are involved in vitamin B6 biosynthesis in Bacillus subtilis. J Biosci Bioeng 2002 0.83
74 Functions of the Hha and YdgT proteins in transcriptional silencing by the nucleoid proteins, H-NS and StpA, in Escherichia coli. DNA Res 2013 0.83
75 High-resolution mapping of in vivo genomic transcription factor binding sites using in situ DNase I footprinting and ChIP-seq. DNA Res 2013 0.83
76 Repression of sigK intervening (skin) element gene expression by the CI-like protein SknR and effect of SknR depletion on growth of Bacillus subtilis cells. J Bacteriol 2010 0.82
77 Functional analysis of the protein Veg, which stimulates biofilm formation in Bacillus subtilis. J Bacteriol 2013 0.81
78 Predicting state transitions in the transcriptome and metabolome using a linear dynamical system model. BMC Bioinformatics 2007 0.80
79 Cyanobacterial genes transmitted to the nucleus before divergence of red algae in the Chromista. J Mol Evol 2004 0.80
80 Improved production of secreted heterologous enzyme in Bacillus subtilis strain MGB874 via modification of glutamate metabolism and growth conditions. Microb Cell Fact 2013 0.78
81 The ResD response regulator, through functional interaction with NsrR and fur, plays three distinct roles in Bacillus subtilis transcriptional control. J Bacteriol 2013 0.78
82 Construction and analysis of EST libraries of the trans-polyisoprene producing plant, Eucommia ulmoides Oliver. Planta 2012 0.78
83 YdfH identified as a repressor of rspA by the use of reduced genome Escherichia coli MGF-01. Biosci Biotechnol Biochem 2012 0.77
84 A simple method for introducing marker-free deletions in the Bacillus subtilis genome. Methods Mol Biol 2011 0.76
85 Bacillus subtilis diacylglycerol kinase (DgkA) enhances efficient sporulation. J Bacteriol 2003 0.76
86 Complete genome sequence of Bacillus cereus NC7401, which produces high levels of the emetic toxin cereulide. J Bacteriol 2012 0.75
87 The accurate replacement of long genome region more than several hundreds kilobases in Bacillus subtilis. Genes Genet Syst 2007 0.75
88 [Studies on the structure of double-helix DNA in the last half century: Genomic studies of Bacillus subtilis and other bacteria]. Tanpakushitsu Kakusan Koso 2003 0.75
89 [Molecular mechanism of bacterial cell division]. Tanpakushitsu Kakusan Koso 2008 0.75