Published in Bioinformatics on April 12, 2003
Evaluation of normalization methods for microarray data. BMC Bioinformatics (2003) 1.97
Extracting binary signals from microarray time-course data. Nucleic Acids Res (2007) 1.67
An improved empirical bayes approach to estimating differential gene expression in microarray time-course data: BETR (Bayesian Estimation of Temporal Regulation). BMC Bioinformatics (2009) 1.43
Time-Course Gene Set Analysis for Longitudinal Gene Expression Data. PLoS Comput Biol (2015) 1.39
BATS: a Bayesian user-friendly software for analyzing time series microarray experiments. BMC Bioinformatics (2008) 1.32
Significance analysis of microarray transcript levels in time series experiments. BMC Bioinformatics (2007) 1.22
Quadratic regression analysis for gene discovery and pattern recognition for non-cyclic short time-course microarray experiments. BMC Bioinformatics (2005) 1.19
Principal components analysis based methodology to identify differentially expressed genes in time-course microarray data. BMC Bioinformatics (2008) 1.06
A unified mixed effects model for gene set analysis of time course microarray experiments. Stat Appl Genet Mol Biol (2009) 1.05
Time-course analysis of genome-wide gene expression data from hormone-responsive human breast cancer cells. BMC Bioinformatics (2008) 1.05
A computational approach to the functional clustering of periodic gene-expression profiles. Genetics (2008) 1.04
Identification of differentially expressed subnetworks based on multivariate ANOVA. BMC Bioinformatics (2009) 1.01
The Annotation, Mapping, Expression and Network (AMEN) suite of tools for molecular systems biology. BMC Bioinformatics (2008) 1.01
A permutation-based multiple testing method for time-course microarray experiments. BMC Bioinformatics (2009) 1.00
Time series expression analyses using RNA-seq: a statistical approach. Biomed Res Int (2013) 0.98
How to cluster gene expression dynamics in response to environmental signals. Brief Bioinform (2011) 0.96
Functional clustering of periodic transcriptional profiles through ARMA(p,q). PLoS One (2010) 0.94
More powerful significant testing for time course gene expression data using functional principal component analysis approaches. BMC Bioinformatics (2013) 0.90
Deciphering herbivory-induced gene-to-metabolite dynamics in Nicotiana attenuata tissues using a multifactorial approach. Plant Physiol (2013) 0.88
A platform for processing expression of short time series (PESTS). BMC Bioinformatics (2011) 0.88
Identification of gene expression patterns using planned linear contrasts. BMC Bioinformatics (2006) 0.87
Term-tissue specific models for prediction of gene ontology biological processes using transcriptional profiles of aging in drosophila melanogaster. BMC Bioinformatics (2008) 0.86
Gene set analysis for longitudinal gene expression data. BMC Bioinformatics (2011) 0.86
A comparative genome analysis of gene expression reveals different regulatory mechanisms between mouse and human embryo pre-implantation development. Reprod Biol Endocrinol (2010) 0.85
Wavelet-based functional clustering for patterns of high-dimensional dynamic gene expression. J Comput Biol (2010) 0.85
Two-stage normalization using background intensities in cDNA microarray data. BMC Bioinformatics (2004) 0.83
Clustering of time-course gene expression profiles using normal mixture models with autoregressive random effects. BMC Bioinformatics (2012) 0.83
Clustering time-series gene expression data using smoothing spline derivatives. EURASIP J Bioinform Syst Biol (2007) 0.82
Response projected clustering for direct association with physiological and clinical response data. BMC Bioinformatics (2008) 0.82
Exploiting the full power of temporal gene expression profiling through a new statistical test: application to the analysis of muscular dystrophy data. BMC Bioinformatics (2006) 0.80
Drosophila selenophosphate synthetase 1 regulates vitamin B6 metabolism: prediction and confirmation. BMC Genomics (2011) 0.80
Bayesian model-based tight clustering for time course data. Comput Stat (2010) 0.80
ToP: a trend-of-disease-progression procedure works well for identifying cancer genes from multi-state cohort gene expression data for human colorectal cancer. PLoS One (2013) 0.79
timeClip: pathway analysis for time course data without replicates. BMC Bioinformatics (2014) 0.78
Genes selection comparative study in microarray data analysis. Bioinformation (2013) 0.77
Integrated analysis of the heterogeneous microarray data. BMC Bioinformatics (2011) 0.77
TNF-insulin crosstalk at the transcription factor GATA6 is revealed by a model that links signaling and transcriptomic data tensors. Sci Signal (2016) 0.76
Influence maximization in time bounded network identifies transcription factors regulating perturbed pathways. Bioinformatics (2016) 0.75
Dental informatics to characterize patients with dentofacial deformities. PLoS One (2013) 0.75
An integrative statistical method to explore herbivory-specific responses in plants. Plant Signal Behav (2013) 0.75
Robust test method for time-course microarray experiments. BMC Bioinformatics (2010) 0.75
Protein-based human iPS cells efficiently generate functional dopamine neurons and can treat a rat model of Parkinson disease. J Clin Invest (2011) 2.23
Odds ratio based multifactor-dimensionality reduction method for detecting gene-gene interactions. Bioinformatics (2006) 2.08
Evaluation of normalization methods for microarray data. BMC Bioinformatics (2003) 1.97
In vitro and in vivo analyses of human embryonic stem cell-derived dopamine neurons. J Neurochem (2005) 1.86
Identification of novel reference genes using multiplatform expression data and their validation for quantitative gene expression analysis. PLoS One (2009) 1.55
arrayQCplot: software for checking the quality of microarray data. Bioinformatics (2006) 1.41
Lithium selectively increases neuronal differentiation of hippocampal neural progenitor cells both in vitro and in vivo. J Neurochem (2004) 1.35
Syntaxin 1A and receptor for activated C kinase interact with the N-terminal region of human dopamine transporter. Neurochem Res (2004) 1.35
Human embryonic stem cell-derived neural precursors as a continuous, stable, and on-demand source for human dopamine neurons. J Neurochem (2007) 1.29
Comprehensive transcriptome analysis of differentiation of embryonic stem cells into midbrain and hindbrain neurons. Dev Biol (2004) 1.24
Combining multiple microarrays in the presence of controlling variables. Bioinformatics (2006) 1.19
Differential gene expression in retinoic acid-induced differentiation of acute promyelocytic leukemia cells, NB4 and HL-60 cells. Biochem Biophys Res Commun (2002) 1.08
Lithium enhances long-term potentiation independently of hippocampal neurogenesis in the rat dentate gyrus. J Neurochem (2003) 1.07
Foxa2 and Nurr1 synergistically yield A9 nigral dopamine neurons exhibiting improved differentiation, function, and cell survival. Stem Cells (2010) 1.06
Dopaminergic neuronal differentiation from rat embryonic neural precursors by Nurr1 overexpression. J Neurochem (2003) 1.01
Dexamethasone inhibits proliferation of adult hippocampal neurogenesis in vivo and in vitro. Brain Res (2004) 1.00
Ascorbate-induced differentiation of embryonic cortical precursors into neurons and astrocytes. J Neurosci Res (2003) 0.97
Enhanced in vitro midbrain dopamine neuron differentiation, dopaminergic function, neurite outgrowth, and 1-methyl-4-phenylpyridium resistance in mouse embryonic stem cells overexpressing Bcl-XL. J Neurosci (2004) 0.96
Neurons and astrocytes secrete factors that cause stem cells to differentiate into neurons and astrocytes, respectively. Mol Cell Neurosci (2003) 0.94
Generation of functional dopamine neurons from neural precursor cells isolated from the subventricular zone and white matter of the adult rat brain using Nurr1 overexpression. Stem Cells (2007) 0.94
Prolonged membrane depolarization enhances midbrain dopamine neuron differentiation via epigenetic histone modifications. Stem Cells (2011) 0.93
Mash1 and neurogenin 2 enhance survival and differentiation of neural precursor cells after transplantation to rat brains via distinct modes of action. Mol Ther (2008) 0.93
Bcl-XL/Bax proteins direct the fate of embryonic cortical precursor cells. Mol Cell Biol (2007) 0.92
Differential actions of the proneural genes encoding Mash1 and neurogenins in Nurr1-induced dopamine neuron differentiation. J Cell Sci (2006) 0.92
Generation of dopamine neurons with improved cell survival and phenotype maintenance using a degradation-resistant nurr1 mutant. Stem Cells (2009) 0.92
Differential effects of corticosterone and dexamethasone on hippocampal neurogenesis in vitro. Biochem Biophys Res Commun (2004) 0.92
Erythropoietin and bone morphogenetic protein 7 mediate ascorbate-induced dopaminergic differentiation from embryonic mesencephalic precursors. Neuroreport (2003) 0.91
Conditions for tumor-free and dopamine neuron-enriched grafts after transplanting human ES cell-derived neural precursor cells. Mol Ther (2009) 0.89
Acquisition of in vitro and in vivo functionality of Nurr1-induced dopamine neurons. FASEB J (2006) 0.86
The complete mitochondrial genome of the javeline goby Acanthogobius hasta (Perciformes, Gobiidae) and phylogenetic considerations. Gene (2004) 0.85
Ascorbic acid responsive genes during neuronal differentiation of embryonic stem cells. Neuroreport (2004) 0.85
Comprehensive analysis of differential gene expression profiles on carbon tetrachloride-induced rat liver injury and regeneration. Toxicol Appl Pharmacol (2004) 0.84
Diagnostic plots for detecting outlying slides in a cDNA microarray experiment. Biotechniques (2005) 0.84
Temporal expression changes during differentiation of neural stem cells derived from mouse embryonic stem cell. J Cell Biochem (2004) 0.84
Two-stage normalization using background intensities in cDNA microarray data. BMC Bioinformatics (2004) 0.83
Retrovirally transduced NCAM140 facilitates neuronal fate choice of hippocampal progenitor cells. J Neurochem (2005) 0.83
Transcriptome analysis and promoter sequence studies on early adipogenesis in 3T3-L1 cells. Nutr Res Pract (2007) 0.82
Feature genes of hepatitis B virus-positive hepatocellular carcinoma, established by its molecular discrimination approach using prediction analysis of microarray. Biochim Biophys Acta (2004) 0.82
Growth hormone-releasing hormone (GHRH) polymorphisms associated with carcass traits of meat in Korean cattle. BMC Genet (2006) 0.81
Differential gene expression profiles in the steatosis/fibrosis model of rat liver by chronic administration of carbon tetrachloride. Toxicol Appl Pharmacol (2005) 0.81
Chronic lithium enhances hippocampal long-term potentiation, but not neurogenesis, in the aged rat dentate gyrus. Biochem Biophys Res Commun (2003) 0.80
Human zinc finger protein 161, a novel transcriptional activator of the dopamine transporter. Biochem Biophys Res Commun (2004) 0.80
Comprehensive analysis of differential gene expression profiles on D-galactosamine-induced acute mouse liver injury and regeneration. Toxicology (2006) 0.80
Changes of gene expression profiles during neuronal differentiation of central nervous system precursors treated with ascorbic acid. J Neurosci Res (2004) 0.80
Gene expression profiling of rat cerebral cortex development using cDNA microarrays. Neurochem Res (2008) 0.79
Comprehensive analysis of differential gene expression profiles on diclofenac-induced acute mouse liver injury and recovery. Toxicol Lett (2006) 0.79
Dextromethorphan alters gene expression in rat brain hippocampus and cortex. Int J Mol Med (2003) 0.79
The differential gene expression profiles between sensitive and resistant breast cancer cells to adriamycin by cDNA microarray. Cancer Res Treat (2004) 0.79
Chaperonin GroESL mediates the protein folding of human liver mitochondrial aldehyde dehydrogenase in Escherichia coli. Biochem Biophys Res Commun (2002) 0.79
Cloning of cytochrome P450 1A (CYP1A) genes from the hermaphrodite fish Rivulus marmoratus and the Japanese medaka Oryzias latipes. Mar Environ Res (2004) 0.78
cDNA microarray analysis of differential gene expression in gastric cancer cells sensitive and resistant to 5-fluorouracil and cisplatin. Cancer Res Treat (2005) 0.78
Reciprocal actions of NCAM and tPA via a Ras-dependent MAPK activation in rat hippocampal neurons. Biochem Biophys Res Commun (2002) 0.77
Cloning and sequence analysis of the self-fertilizing fish Rivulus marmoratus immediate early gene c-fos. Mar Environ Res (2004) 0.76
The functional domains of dopamine transporter for cocaine analog, CFT binding. Exp Mol Med (2002) 0.76
Genomic cloning and expression of vitellogenin gene from the self-fertilizing fish Rivulus marmoratus (Cyprinodontiformes, Rivulidae). Mar Environ Res (2004) 0.75
Spot intensity ratio statistics in two-channel microarray experiments. J Bioinform Comput Biol (2007) 0.75
Teratogenic effects of N-ethyl-N-nitrosourea (ENU) on larvae of the self-fertilizing fish Rivulus marmoratus (Cyprinodontiformes, Rivulidae). Teratog Carcinog Mutagen (2002) 0.75
Cloning and characterization of zinc finger protein 161 in Rattus norvegicus. DNA Seq (2004) 0.75
Cloning and characterization of replication protein A p32 complementary DNA in zebrafish (Danio rerio). Mar Biotechnol (NY) (2002) 0.75
Proposed Nomogram Predicting the Individual Risk of Malignancy in the Patients With Branch Duct Type Intraductal Papillary Mucinous Neoplasms of the Pancreas. Ann Surg (2017) 0.75
Statistical analysis of MMR vaccine adverse events on aseptic meningitis using the case cross-over design. Stat Med (2004) 0.75
Gene by environment interactions. Genet Epidemiol (2007) 0.75
Expression profiles of 4-nonylphenol-exposed medaka (Oryzias latipes) analyzed with a 3.4 K microarray. Mar Environ Res (2006) 0.75