Published in BMC Bioinformatics on April 03, 2006
Cluster analysis and display of genome-wide expression patterns. Proc Natl Acad Sci U S A (1998) 192.97
Significance analysis of time course microarray experiments. Proc Natl Acad Sci U S A (2005) 8.65
X chromosome-linked muscular dystrophy (mdx) in the mouse. Proc Natl Acad Sci U S A (1984) 8.35
Experimental design for gene expression microarrays. Biostatistics (2001) 5.46
Identifying periodically expressed transcripts in microarray time series data. Bioinformatics (2004) 4.62
Cluster analysis of gene expression dynamics. Proc Natl Acad Sci U S A (2002) 3.83
Expression profiling in the muscular dystrophies: identification of novel aspects of molecular pathophysiology. J Cell Biol (2000) 3.34
A chronic inflammatory response dominates the skeletal muscle molecular signature in dystrophin-deficient mdx mice. Hum Mol Genet (2002) 2.80
Gene expression comparison of biopsies from Duchenne muscular dystrophy (DMD) and normal skeletal muscle. Proc Natl Acad Sci U S A (2002) 2.60
Model-based methods for identifying periodically expressed genes based on time course microarray gene expression data. Bioinformatics (2004) 2.32
Statistical tests for identifying differentially expressed genes in time-course microarray experiments. Bioinformatics (2003) 2.22
The dystrophin-glycoprotein complex, cellular signaling, and the regulation of cell survival in the muscular dystrophies. Muscle Nerve (2001) 1.79
The callipyge mutation enhances the expression of coregulated imprinted genes in cis without affecting their imprinting status. Nat Genet (2001) 1.71
Limb-girdle muscular dystrophy type 2G is caused by mutations in the gene encoding the sarcomeric protein telethonin. Nat Genet (2000) 1.71
An experimental evaluation of a loop versus a reference design for two-channel microarrays. Bioinformatics (2004) 1.54
Fluorescent labelling of cRNA for microarray applications. Nucleic Acids Res (2003) 1.46
Role of DBP in the circadian oscillatory mechanism. Mol Cell Biol (2000) 1.44
A regression-based method to identify differentially expressed genes in microarray time course studies and its application in an inducible Huntington's disease transgenic model. Hum Mol Genet (2002) 1.43
Altered vascular remodeling in fibulin-5-deficient mice reveals a role of fibulin-5 in smooth muscle cell proliferation and migration. Proc Natl Acad Sci U S A (2005) 1.37
Loss of the sarcoglycan complex and sarcospan leads to muscular dystrophy in beta-sarcoglycan-deficient mice. Hum Mol Genet (1999) 1.32
Common pathological mechanisms in mouse models for muscular dystrophies. FASEB J (2005) 1.31
Muscle regeneration in dystrophin-deficient mdx mice studied by gene expression profiling. BMC Genomics (2005) 1.23
Statistical analysis of a small set of time-ordered gene expression data using linear splines. Bioinformatics (2002) 1.22
CD26 up-regulates expression of CD86 on antigen-presenting cells by means of caveolin-1. Proc Natl Acad Sci U S A (2004) 1.21
Molecular pathophysiology of myofiber injury in deficiencies of the dystrophin-glycoprotein complex. Am J Phys Med Rehabil (2002) 1.17
Muscle hypertrophy in Duchenne muscular dystrophy. A pathological and morphometric study. J Neurol (1989) 1.08
Decorin and biglycan expression is differentially altered in several muscular dystrophies. Brain (2005) 1.01
Abnormal postnatal maintenance of elevated DLK1 transcript levels in callipyge sheep. Mamm Genome (2005) 0.98
Pathological analysis of muscle hypertrophy and degeneration in muscular dystrophy in gamma-sarcoglycan-deficient mice. Neuromuscul Disord (2003) 0.97
Transcriptome and genome sequencing uncovers functional variation in humans. Nature (2013) 8.89
A promoter-level mammalian expression atlas. Nature (2014) 6.25
Sequence and analysis of rice chromosome 4. Nature (2002) 4.39
Prorenin induces intracellular signaling in cardiomyocytes independently of angiotensin II. Hypertension (2006) 2.39
Rapid, label-free detection of brain tumors with stimulated Raman scattering microscopy. Sci Transl Med (2013) 2.31
Deep sequencing of RNA from immune cell-derived vesicles uncovers the selective incorporation of small non-coding RNA biotypes with potential regulatory functions. Nucleic Acids Res (2012) 2.15
Achievement of pulmonary vein isolation in patients undergoing circumferential pulmonary vein ablation: a randomized comparison between two different isolation approaches. J Cardiovasc Electrophysiol (2006) 2.03
Ambient mass spectrometry for the intraoperative molecular diagnosis of human brain tumors. Proc Natl Acad Sci U S A (2013) 1.95
PASSion: a pattern growth algorithm-based pipeline for splice junction detection in paired-end RNA-Seq data. Bioinformatics (2012) 1.95
T-box transcription factor TBX3 reprogrammes mature cardiac myocytes into pacemaker-like cells. Cardiovasc Res (2012) 1.91
A multiuser detector based on artificial bee colony algorithm for DS-UWB systems. ScientificWorldJournal (2013) 1.79
Direct evidence revealing structural elements essential for the high binding ability of bisphenol A to human estrogen-related receptor-gamma. Environ Health Perspect (2008) 1.68
Gateways to the FANTOM5 promoter level mammalian expression atlas. Genome Biol (2015) 1.58
Dual regulation of c-Myc by p300 via acetylation-dependent control of Myc protein turnover and coactivation of Myc-induced transcription. Mol Cell Biol (2005) 1.54
Endocrine disruptor bisphenol A strongly binds to human estrogen-related receptor gamma (ERRgamma) with high constitutive activity. Toxicol Lett (2006) 1.53
Solid-state structure of free base guanidine achieved at last. Chemistry (2009) 1.52
Structural evidence for endocrine disruptor bisphenol A binding to human nuclear receptor ERR gamma. J Biochem (2007) 1.51
Consensus clustering and functional interpretation of gene-expression data. Genome Biol (2004) 1.48
Guidelines for antisense oligonucleotide design and insight into splice-modulating mechanisms. Mol Ther (2008) 1.48
Targeted exon skipping in transgenic hDMD mice: A model for direct preclinical screening of human-specific antisense oligonucleotides. Mol Ther (2004) 1.46
Genetic variation in T-box binding element functionally affects SCN5A/SCN10A enhancer. J Clin Invest (2012) 1.43
New methods for next generation sequencing based microRNA expression profiling. BMC Genomics (2010) 1.38
Genome-wide analysis of transposon insertion polymorphisms reveals intraspecific variation in cultivated rice. Plant Physiol (2008) 1.37
Can subtle changes in gene expression be consistently detected with different microarray platforms? BMC Genomics (2008) 1.36
A common reference for cDNA microarray hybridizations. Nucleic Acids Res (2002) 1.35
CORE_TF: a user-friendly interface to identify evolutionary conserved transcription factor binding sites in sets of co-regulated genes. BMC Bioinformatics (2008) 1.31
Dwarf 88, a novel putative esterase gene affecting architecture of rice plant. Plant Mol Biol (2009) 1.29
A fine physical map of the rice chromosome 4. Genome Res (2002) 1.26
Genome-wide assessment of differential roles for p300 and CBP in transcription regulation. Nucleic Acids Res (2010) 1.25
Poly(A) binding protein nuclear 1 levels affect alternative polyadenylation. Nucleic Acids Res (2012) 1.23
Distinct functions of glial and neuronal dystroglycan in the developing and adult mouse brain. J Neurosci (2010) 1.20
An extended Kalman filtering approach to modeling nonlinear dynamic gene regulatory networks via short gene expression time series. IEEE/ACM Trans Comput Biol Bioinform (2009) 1.19
Gene expression profiling of the forming atrioventricular node using a novel tbx3-based node-specific transgenic reporter. Circ Res (2009) 1.18
Increased sensitivity of next generation sequencing-based expression profiling after globin reduction in human blood RNA. BMC Genomics (2012) 1.18
Integrated analysis of microRNA and mRNA expression: adding biological significance to microRNA target predictions. Nucleic Acids Res (2013) 1.18
The effects of low levels of dystrophin on mouse muscle function and pathology. PLoS One (2012) 1.16
ERRgamma tethers strongly bisphenol A and 4-alpha-cumylphenol in an induced-fit manner. Biochem Biophys Res Commun (2008) 1.14
Genome-wide characterization of the biggest grass, bamboo, based on 10,608 putative full-length cDNA sequences. BMC Plant Biol (2010) 1.14
Novel protein-protein interactions inferred from literature context. PLoS One (2009) 1.13
Tissue-specific transcript annotation and expression profiling with complementary next-generation sequencing technologies. Nucleic Acids Res (2010) 1.13
Low dystrophin levels increase survival and improve muscle pathology and function in dystrophin/utrophin double-knockout mice. FASEB J (2013) 1.11
Molecular and phenotypic characterization of a mouse model of oculopharyngeal muscular dystrophy reveals severe muscular atrophy restricted to fast glycolytic fibres. Hum Mol Genet (2010) 1.10
Intensity-based analysis of two-colour microarrays enables efficient and flexible hybridization designs. Nucleic Acids Res (2004) 1.08
Coexpression network analysis identifies transcriptional modules related to proastrocytic differentiation and sprouty signaling in glioma. Cancer Res (2010) 1.08
Bounded H∞ synchronization and state estimation for discrete time-varying stochastic complex networks over a finite horizon. IEEE Trans Neural Netw (2010) 1.07
Generation and characterization of transgenic mice with the full-length human DMD gene. J Biol Chem (2007) 1.07
Exploring the transcriptome of ciliated cells using in silico dissection of human tissues. PLoS One (2012) 1.06
Passive smoking and preterm birth in urban China. Am J Epidemiol (2014) 1.05
Global synchronization control of general delayed discrete-time networks with stochastic coupling and disturbances. IEEE Trans Syst Man Cybern B Cybern (2008) 1.04
Transcriptional regulation of ethylene receptor and CTR genes involved in ethylene-induced flower opening in cut rose (Rosa hybrida) cv. Samantha. J Exp Bot (2006) 1.04
Expression profiling in stably regenerating skeletal muscle of dystrophin-deficient mdx mice. Neuromuscul Disord (2002) 1.01
Accurate quantification of dystrophin mRNA and exon skipping levels in duchenne muscular dystrophy. Lab Invest (2010) 1.01
Proteomic analysis of the dysferlin protein complex unveils its importance for sarcolemmal maintenance and integrity. PLoS One (2010) 1.00
Ferroelectric instability under screened Coulomb interactions. Phys Rev Lett (2012) 1.00
Serum protein profiling in mice: identification of Factor XIIIa as a potential biomarker for muscular dystrophy. Proteomics (2008) 1.00
Exonic sequences provide better targets for antisense oligonucleotides than splice site sequences in the modulation of Duchenne muscular dystrophy splicing. Oligonucleotides (2010) 1.00
Desorption electrospray ionization then MALDI mass spectrometry imaging of lipid and protein distributions in single tissue sections. Anal Chem (2011) 1.00
Comparison of skeletal muscle pathology and motor function of dystrophin and utrophin deficient mouse strains. Neuromuscul Disord (2012) 0.99
Global exponential stability of generalized recurrent neural networks with discrete and distributed delays. Neural Netw (2005) 0.99
Large-scale gene expression analysis of human skeletal myoblast differentiation. Neuromuscul Disord (2004) 0.98
Application of the Type D Scale (DS14) in Chinese coronary heart disease patients and healthy controls. J Psychosom Res (2008) 0.97
Microarray retriever: a web-based tool for searching and large scale retrieval of public microarray data. Nucleic Acids Res (2008) 0.96
Literature-aided interpretation of gene expression data with the weighted global test. Brief Bioinform (2010) 0.96
A flow cytometry-based immuno-titration assay for rapid and accurate titer determination of modified vaccinia Ankara virus vectors. J Virol Methods (2010) 0.96
Tumor-derived secretory clusterin induces epithelial-mesenchymal transition and facilitates hepatocellular carcinoma metastasis. Int J Biochem Cell Biol (2012) 0.96
Fibronectin is a serum biomarker for Duchenne muscular dystrophy. Proteomics Clin Appl (2014) 0.96
Tbx2 and Tbx3 induce atrioventricular myocardial development and endocardial cushion formation. Cell Mol Life Sci (2011) 0.95
Placenta expressing the greatest quantity of bisphenol A receptor ERR{gamma} among the human reproductive tissues: Predominant expression of type-1 ERRgamma isoform. J Biochem (2009) 0.95
Mutant huntingtin activates Nrf2-responsive genes and impairs dopamine synthesis in a PC12 model of Huntington's disease. BMC Mol Biol (2008) 0.95
Visual impairment in the absence of dystroglycan. J Neurosci (2009) 0.94
A 3 months mild functional test regime does not affect disease parameters in young mdx mice. Neuromuscul Disord (2010) 0.94
Bisphenol AF is a full agonist for the estrogen receptor ERalpha but a highly specific antagonist for ERbeta. Environ Health Perspect (2010) 0.94
Stability analysis for stochastic Cohen-Grossberg neural networks with mixed time delays. IEEE Trans Neural Netw (2006) 0.92
Dual exon skipping in myostatin and dystrophin for Duchenne muscular dystrophy. BMC Med Genomics (2011) 0.92
Literature-aided meta-analysis of microarray data: a compendium study on muscle development and disease. BMC Bioinformatics (2008) 0.91
Gene expression variation between mouse inbred strains. BMC Genomics (2004) 0.91
Early onset MSI-H colon cancer with MLH1 promoter methylation, is there a genetic predisposition? BMC Cancer (2010) 0.91
Fcγ receptor IIb strongly regulates Fcγ receptor-facilitated T cell activation by dendritic cells. J Immunol (2012) 0.91
mRNA degradation controls differentiation state-dependent differences in transcript and splice variant abundance. Nucleic Acids Res (2010) 0.90
Synchronization and state estimation for discrete-time complex networks with distributed delays. IEEE Trans Syst Man Cybern B Cybern (2008) 0.90
Proteomic analysis of mouse liver plasma membrane: use of differential extraction to enrich hydrophobic membrane proteins. Proteomics (2005) 0.90
State estimation for delayed neural networks. IEEE Trans Neural Netw (2005) 0.89
BMP antagonists enhance myogenic differentiation and ameliorate the dystrophic phenotype in a DMD mouse model. Neurobiol Dis (2010) 0.89
Aging as accelerated accumulation of somatic variants: whole-genome sequencing of centenarian and middle-aged monozygotic twin pairs. Twin Res Hum Genet (2013) 0.89
Identification of transaldolase as a novel serum biomarker for hepatocellular carcinoma metastasis using xenografted mouse model and clinic samples. Cancer Lett (2011) 0.89
A decline in PABPN1 induces progressive muscle weakness in oculopharyngeal muscle dystrophy and in muscle aging. Aging (Albany NY) (2013) 0.89
Pretreatment plasma D-dimer, fibrinogen, and platelet levels significantly impact prognosis in patients with epithelial ovarian cancer independently of venous thromboembolism. Int J Gynecol Cancer (2015) 0.88
LC-MS/MS analysis of ovarian cancer metastasis-related proteins using a nude mouse model: 14-3-3 zeta as a candidate biomarker. J Proteome Res (2010) 0.88
In silico discovery and experimental validation of new protein-protein interactions. Proteomics (2011) 0.88
DMD transcript imbalance determines dystrophin levels. FASEB J (2013) 0.87
Mining pathway signatures from microarray data and relevant biological knowledge. J Biomed Inform (2007) 0.87
LPAR1 and ITGA4 regulate peripheral blood monocyte counts. Hum Mutat (2011) 0.87
Determining the quality and complexity of next-generation sequencing data without a reference genome. Genome Biol (2014) 0.86
Cell-type specific regulation of myostatin signaling. FASEB J (2011) 0.86
DeepSAGE reveals genetic variants associated with alternative polyadenylation and expression of coding and non-coding transcripts. PLoS Genet (2013) 0.86
Interspecies translation of disease networks increases robustness and predictive accuracy. PLoS Comput Biol (2011) 0.86