Published in Bioinformatics on April 12, 2003
The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins. Science (2002) 11.11
Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes. Nature (2008) 10.11
The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science (2007) 8.12
The amphioxus genome and the evolution of the chordate karyotype. Nature (2008) 8.03
The medaka draft genome and insights into vertebrate genome evolution. Nature (2007) 5.77
Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D. Nature (2004) 5.08
Inducible antibacterial defense system in C. elegans. Curr Biol (2002) 4.42
TLR-independent control of innate immunity in Caenorhabditis elegans by the TIR domain adaptor protein TIR-1, an ortholog of human SARM. Nat Immunol (2004) 4.11
The landscape of C. elegans 3'UTRs. Science (2010) 3.32
Role of the Dnmt3 family in de novo methylation of imprinted and repetitive sequences during male germ cell development in the mouse. Hum Mol Genet (2007) 3.27
Reconstruction of the vertebrate ancestral genome reveals dynamic genome reorganization in early vertebrates. Genome Res (2007) 3.12
Chromatin-associated periodicity in genetic variation downstream of transcriptional start sites. Science (2008) 3.10
Comparative genomics of Physcomitrella patens gametophytic transcriptome and Arabidopsis thaliana: implication for land plant evolution. Proc Natl Acad Sci U S A (2003) 2.33
Sequence analysis of the genome of an oil-bearing tree, Jatropha curcas L. DNA Res (2010) 2.19
The ELT-2 GATA-factor and the global regulation of transcription in the C. elegans intestine. Dev Biol (2006) 2.00
Retrotransposon silencing by DNA methylation can drive mammalian genomic imprinting. PLoS Genet (2007) 1.70
Identification of genes expressed in the hermaphrodite germ line of C. elegans using SAGE. BMC Genomics (2009) 1.63
Complete sequence and analysis of the plastid genome of the unicellular red alga Cyanidioschyzon merolae. DNA Res (2003) 1.58
ELT-2 is the predominant transcription factor controlling differentiation and function of the C. elegans intestine, from embryo to adult. Dev Biol (2008) 1.55
Axial patterning in cephalochordates and the evolution of the organizer. Nature (2007) 1.52
Correlated clustering and virtual display of gene expression patterns in the wheat life cycle by large-scale statistical analyses of expressed sequence tags. Plant J (2003) 1.49
Development of 5006 full-length CDNAs in barley: a tool for accessing cereal genomics resources. DNA Res (2009) 1.47
Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. BMC Genomics (2010) 1.41
Identification of ciliated sensory neuron-expressed genes in Caenorhabditis elegans using targeted pull-down of poly(A) tails. Genome Biol (2005) 1.35
Gene organization of the liverwort Y chromosome reveals distinct sex chromosome evolution in a haploid system. Proc Natl Acad Sci U S A (2007) 1.31
A Caenorhabditis elegans TGF-beta, DBL-1, controls the expression of LON-1, a PR-related protein, that regulates polyploidization and body length. EMBO J (2002) 1.28
Translational control of maternal glp-1 mRNA by POS-1 and its interacting protein SPN-4 in Caenorhabditis elegans. Development (2003) 1.21
Bombyx small RNAs: genomic defense system against transposons in the silkworm, Bombyx mori. Insect Biochem Mol Biol (2008) 1.20
Latrophilin signaling links anterior-posterior tissue polarity and oriented cell divisions in the C. elegans embryo. Dev Cell (2009) 1.18
A genomewide survey of developmentally relevant genes in Ciona intestinalis. I. Genes for bHLH transcription factors. Dev Genes Evol (2003) 1.18
Medaka genomics: a bridge between mutant phenotype and gene function. Mech Dev (2004) 1.17
Analyses of cDNAs from growth and slug stages of Dictyostelium discoideum. Nucleic Acids Res (2004) 1.15
Ciona intestinalis cDNA projects: expressed sequence tag analyses and gene expression profiles during embryogenesis. Gene (2002) 1.14
The ancestor of extant Japanese fancy mice contributed to the mosaic genomes of classical inbred strains. Genome Res (2013) 1.14
A genomewide survey of developmentally relevant genes in Ciona intestinalis. II. Genes for homeobox transcription factors. Dev Genes Evol (2003) 1.11
Coelacanth genomes reveal signatures for evolutionary transition from water to land. Genome Res (2013) 1.10
Chromosomal mapping of 170 BAC clones in the ascidian Ciona intestinalis. Genome Res (2005) 1.09
A cDNA resource for the cephalochordate amphioxus Branchiostoma floridae. Dev Genes Evol (2008) 1.06
Transcriptome analysis of hagfish leukocytes: a framework for understanding the immune system of jawless fishes. Dev Comp Immunol (2004) 1.04
Tissue expression map of a large number of expressed sequence tags and its application to in silico screening of stress response genes in common wheat. Mol Genet Genomics (2006) 1.04
Hagfish leukocytes express a paired receptor family with a variable domain resembling those of antigen receptors. J Immunol (2005) 1.03
The phylogenetic position of red algae revealed by multiple nuclear genes from mitochondria-containing eukaryotes and an alternative hypothesis on the origin of plastids. J Mol Evol (2003) 1.03
Comparative gene expression analysis of susceptible and resistant near-isogenic lines in common wheat infected by Puccinia triticina. DNA Res (2010) 1.02
SPI: a tool for incorporating gene expression data into a four-dimensional database of Caenorhabditis elegans embryogenesis. Bioinformatics (2004) 1.01
Construction of a full-length cDNA library from young spikelets of hexaploid wheat and its characterization by large-scale sequencing of expressed sequence tags. Genes Genet Syst (2004) 1.01
Construction of a gamete-enriched gene pool and RNAi-mediated functional analysis in Dictyostelium discoideum. Mech Dev (2003) 0.99
NBRP databases: databases of biological resources in Japan. Nucleic Acids Res (2009) 0.99
A genomewide survey of developmentally relevant genes in Ciona intestinalis. III. Genes for Fox, ETS, nuclear receptors and NFkappaB. Dev Genes Evol (2003) 0.98
RUNX regulates stem cell proliferation and differentiation: insights from studies of C. elegans. J Cell Biochem (2007) 0.97
Gene expression profiles in young adult Ciona intestinalis. Dev Genes Evol (2002) 0.97
Large scale EST analyses in Ciona intestinalis: its application as Northern blot analyses. Dev Genes Evol (2003) 0.95
C. elegans mig-6 encodes papilin isoforms that affect distinct aspects of DTC migration, and interacts genetically with mig-17 and collagen IV. Development (2009) 0.94
Protocols for large scale in situ hybridization on C. elegans larvae. WormBook (2006) 0.94
EST analysis of gene expression in testis of the ascidian Ciona intestinalis. Mol Reprod Dev (2002) 0.94
Gene expression profiles in tadpole larvae of Ciona intestinalis. Dev Biol (2002) 0.94
Protein phosphatase 2A cooperates with the autophagy-related kinase UNC-51 to regulate axon guidance in Caenorhabditis elegans. Development (2010) 0.94
Identification and characterization of new long conserved noncoding sequences in vertebrates. Mamm Genome (2008) 0.93
Caenorhabditis elegans RBX1 is essential for meiosis, mitotic chromosomal condensation and segregation, and cytokinesis. Genes Cells (2003) 0.91
The C. elegans CBFbeta homologue BRO-1 interacts with the Runx factor, RNT-1, to promote stem cell proliferation and self-renewal. Development (2007) 0.91
Caenorhabditis elegans reticulon interacts with RME-1 during embryogenesis. Biochem Biophys Res Commun (2002) 0.91
Update of MAGEST: Maboya Gene Expression patterns and Sequence Tags. Nucleic Acids Res (2002) 0.90
Diversity in copy number and structure of a silkworm morphogenetic gene as a result of domestication. Genetics (2011) 0.89
The minimal eukaryotic ribosomal DNA units in the primitive red alga Cyanidioschyzon merolae. DNA Res (2004) 0.88
cimp1, a novel astacin family metalloproteinase gene from East African cichlids, is differentially expressed between species during growth. Mol Biol Evol (2005) 0.88
Organization and structure of hox gene loci in medaka genome and comparison with those of pufferfish and zebrafish genomes. Gene (2006) 0.87
Mutations in cell elongation genes mreB, mrdA and mrdB suppress the shape defect of RodZ-deficient cells. Mol Microbiol (2013) 0.87
The C. elegans RUNX transcription factor RNT-1/MAB-2 is required for asymmetrical cell division of the T blast cell. Dev Biol (2005) 0.86
UTGB/medaka: genomic resource database for medaka biology. Nucleic Acids Res (2007) 0.86
Tunable synthetic phenotypic diversification on Waddington's landscape through autonomous signaling. Proc Natl Acad Sci U S A (2011) 0.86
magp4 gene may contribute to the diversification of cichlid morphs and their speciation. Gene (2006) 0.83
Extensive analysis of EST sequences reveals that all cichlid species in Lake Victoria share almost identical transcript sets. Gene (2008) 0.82
Polycystic kidney disease in the medaka (Oryzias latipes) pc mutant caused by a mutation in the Gli-Similar3 (glis3) gene. PLoS One (2009) 0.82
The β-catenin HMP-2 functions downstream of Src in parallel with the Wnt pathway in early embryogenesis of C. elegans. Dev Biol (2011) 0.82
Gene expression profiles in Ciona intestinalis cleavage-stage embryos. Mech Dev (2002) 0.82
Identification of transcripts expressed preferentially in hemocytes of Ciona intestinalis that can be used as molecular markers. DNA Res (2004) 0.81
Molecular cloning and characterization of the repetitive DNA sequences that comprise the constitutive heterochromatin of the W chromosomes of medaka fishes. Chromosome Res (2012) 0.80
Comparative sequence analysis of a gene-dense region among closely related species of Drosophila melanogaster. Genes Genet Syst (2004) 0.80
Effects of downstream genes on synthetic genetic circuits. BMC Syst Biol (2014) 0.80
nfi-I affects behavior and life-span in C. elegans but is not essential for DNA replication or survival. BMC Dev Biol (2005) 0.80
Cyanobacterial genes transmitted to the nucleus before divergence of red algae in the Chromista. J Mol Evol (2004) 0.80
Transgenic analysis of the medaka mesp-b enhancer in somitogenesis. Dev Growth Differ (2006) 0.80
A genomic overview of short genetic variations in a basal chordate, Ciona intestinalis. BMC Genomics (2012) 0.79
Comprehensive functional analyses of expressed sequence tags in common wheat (Triticum aestivum). DNA Res (2012) 0.79
General applicability of synthetic gene-overexpression for cell-type ratio control via reprogramming. ACS Synth Biol (2013) 0.79
C. elegans VANG-1 modulates life span via insulin/IGF-1-like signaling. PLoS One (2012) 0.78
Characterization of a novel C. elegans RGS protein with a C2 domain: evidence for direct association between C2 domain and Galphaq subunit. Life Sci (2003) 0.78
Analysis of large scale expression sequenced tags (ESTs) from the anural ascidian, Molgula tectiformis. Dev Biol (2007) 0.78
VBP-1 is necessary for morphogenesis in Caenorhabditis elegans. Oncol Rep (2003) 0.77
Construction of a genetic AND gate under a new standard for assembly of genetic parts. BMC Genomics (2010) 0.77
A cDNA resource for gene expression studies of a hemichordate, Ptychodera flava. Zoolog Sci (2014) 0.77
Large-scale analysis of the genes involved in fin regeneration and blastema formation in the medaka, Oryzias latipes. Mech Dev (2004) 0.77
Mass identification of transcriptional units expressed from the Bombyx mori nucleopolyhedrovirus genome. J Gen Virol (2010) 0.77
Two site genetic incorporation of varying length polyethylene glycol into the backbone of one peptide. Chem Commun (Camb) (2015) 0.76
A multiphysics model of in vitro transcription coupling enzymatic reaction and precipitation formation. Biophys J (2012) 0.75
Tunability of the ratio of cell states after the synthetic diversification by the diversity generator. Commun Integr Biol (2012) 0.75
Quantitative design and experimental validation for a single-molecule DNA nanodevice transformable among three structural states. Nucleic Acids Res (2010) 0.75
Physical modeling of the cellular arrangement in C. elegans early embryo: effect of rounding and stiffening of the cells. Genome Inform (2002) 0.75
A new modeling method in feature construction for the HSQC spectra screening problem. Bioinformatics (2008) 0.75
[Why are genomes DNA?]. Tanpakushitsu Kakusan Koso (2003) 0.75