Published in Mol Microbiol on May 01, 2003
The structure and function of small nucleolar ribonucleoproteins. Nucleic Acids Res (2007) 2.50
New bioinformatic tools for analysis of nucleotide modifications in eukaryotic rRNA. RNA (2007) 1.98
RNA-guided RNA modification: functional organization of the archaeal H/ACA RNP. Genes Dev (2005) 1.86
Reconstitution of archaeal H/ACA small ribonucleoprotein complexes active in pseudouridylation. Nucleic Acids Res (2005) 1.65
The 3D rRNA modification maps database: with interactive tools for ribosome analysis. Nucleic Acids Res (2007) 1.65
Identification of BHB splicing motifs in intron-containing tRNAs from 18 archaea: evolutionary implications. RNA (2003) 1.64
From snoRNA to miRNA: Dual function regulatory non-coding RNAs. Biochimie (2011) 1.35
The K-loop, a general feature of the Pyrococcus C/D guide RNAs, is an RNA structural motif related to the K-turn. Nucleic Acids Res (2005) 1.27
Recognition of a complex substrate by the KsgA/Dim1 family of enzymes has been conserved throughout evolution. RNA (2006) 1.24
Crystal structure determination and site-directed mutagenesis of the Pyrococcus abyssi aCBF5-aNOP10 complex reveal crucial roles of the C-terminal domains of both proteins in H/ACA sRNP activity. Nucleic Acids Res (2006) 1.24
In vitro RNP assembly and methylation guide activity of an unusual box C/D RNA, cis-acting archaeal pre-tRNA(Trp). Nucleic Acids Res (2003) 1.19
Influence of temperature on tRNA modification in archaea: Methanococcoides burtonii (optimum growth temperature [Topt], 23 degrees C) and Stetteria hydrogenophila (Topt, 95 degrees C). J Bacteriol (2003) 1.08
Structural organization of box C/D RNA-guided RNA methyltransferase. Proc Natl Acad Sci U S A (2009) 1.08
Poly(A) polymerase modification and reverse transcriptase PCR amplification of environmental RNA. Appl Environ Microbiol (2005) 1.07
The Cm56 tRNA modification in archaea is catalyzed either by a specific 2'-O-methylase, or a C/D sRNP. RNA (2005) 1.03
The bipartite architecture of the sRNA in an archaeal box C/D complex is a primary determinant of specificity. Nucleic Acids Res (2006) 1.01
Identification of determinants in the protein partners aCBF5 and aNOP10 necessary for the tRNA:Psi55-synthase and RNA-guided RNA:Psi-synthase activities. Nucleic Acids Res (2007) 0.99
Pseudouridine-guide RNAs and other Cbf5p-associated RNAs in Euglena gracilis. RNA (2004) 0.97
A novel experimental approach for systematic identification of box H/ACA snoRNAs from eukaryotes. Nucleic Acids Res (2005) 0.96
Circular box C/D RNAs in Pyrococcus furiosus. Proc Natl Acad Sci U S A (2004) 0.93
Efficient and specific knockdown of small non-coding RNAs in mammalian cells and in mice. Nucleic Acids Res (2010) 0.93
Fine-tuning of translation termination efficiency in Saccharomyces cerevisiae involves two factors in close proximity to the exit tunnel of the ribosome. Genetics (2007) 0.89
Crystal structure of Mil (Mth680): internal duplication and similarity between the Imp4/Brix domain and the anticodon-binding domain of class IIa aminoacyl-tRNA synthetases. EMBO Rep (2005) 0.87
Structures of ribonucleoprotein particle modification enzymes. Q Rev Biophys (2010) 0.86
Deficiency of the tRNATyr:Psi 35-synthase aPus7 in Archaea of the Sulfolobales order might be rescued by the H/ACA sRNA-guided machinery. Nucleic Acids Res (2009) 0.86
Treasure hunt in an amoeba: non-coding RNAs in Dictyostelium discoideum. Curr Genet (2007) 0.83
Messenger RNA processing in Methanocaldococcus (Methanococcus) jannaschii. RNA (2009) 0.80
Ribonucleoproteins in archaeal pre-rRNA processing and modification. Archaea (2013) 0.79
Analysis of a critical interaction within the archaeal box C/D small ribonucleoprotein complex. J Biol Chem (2009) 0.78
2'-O-methylation of the wobble residue of elongator pre-tRNA(Met) in Haloferax volcanii is guided by a box C/D RNA containing unique features. RNA Biol (2011) 0.78
Clustered organization, polycistronic transcription, and evolution of modification-guide snoRNA genes in Euglena gracilis. Mol Genet Genomics (2011) 0.77
Comparative study of two box H/ACA ribonucleoprotein pseudouridine-synthases: relation between conformational dynamics of the guide RNA, enzyme assembly and activity. PLoS One (2013) 0.77
rRNA modifications and ribosome function. Trends Biochem Sci (2002) 4.01
RNA-guided nucleotide modification of ribosomal and other RNAs. J Biol Chem (2002) 3.59
Genome-wide searching for pseudouridylation guide snoRNAs: analysis of the Saccharomyces cerevisiae genome. Nucleic Acids Res (2004) 2.94
Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution. Nat Genet (2013) 2.76
Ribosome structure and activity are altered in cells lacking snoRNPs that form pseudouridines in the peptidyl transferase center. Mol Cell (2003) 2.37
RNA-guided nucleotide modification of ribosomal and non-ribosomal RNAs in Archaea. Mol Microbiol (2004) 2.09
In vitro reconstitution and activity of a C/D box methylation guide ribonucleoprotein complex. Proc Natl Acad Sci U S A (2002) 2.07
New bioinformatic tools for analysis of nucleotide modifications in eukaryotic rRNA. RNA (2007) 1.98
rRNA modifications in an intersubunit bridge of the ribosome strongly affect both ribosome biogenesis and activity. Mol Cell (2007) 1.95
The 3D rRNA modification maps database: with interactive tools for ribosome analysis. Nucleic Acids Res (2007) 1.65
Loss of rRNA modifications in the decoding center of the ribosome impairs translation and strongly delays pre-rRNA processing. RNA (2009) 1.41
The helicase Has1p is required for snoRNA release from pre-rRNA. Mol Cell Biol (2006) 1.34
Nucleotide modifications in three functionally important regions of the Saccharomyces cerevisiae ribosome affect translation accuracy. Nucleic Acids Res (2009) 1.27
The expanding world of small RNAs in the hyperthermophilic archaeon Sulfolobus solfataricus. Mol Microbiol (2005) 1.23
RNomics and Modomics in the halophilic archaea Haloferax volcanii: identification of RNA modification genes. BMC Genomics (2008) 1.10
A systematic, ligation-based approach to study RNA modifications. RNA (2006) 1.10
Ribosome performance is enhanced by a rich cluster of pseudouridines in the A-site finger region of the large subunit. J Biol Chem (2008) 1.06
Probing the structure and function of an archaeal C/D-box methylation guide sRNA. RNA (2006) 1.03
Proteopedia: a status report on the collaborative, 3D web-encyclopedia of proteins and other biomolecules. J Struct Biol (2011) 1.02
Modulation of Chemical Composition and Other Parameters of the Cell at Different Exponential Growth Rates. Ecosal Plus (2008) 1.00
Mis-targeted methylation in rRNA can severely impair ribosome synthesis and activity. RNA Biol (2008) 1.00
Identifying effects of snoRNA-guided modifications on the synthesis and function of the yeast ribosome. Methods Enzymol (2007) 1.00
Medium-dependent control of the bacterial growth rate. Biochimie (2012) 0.98
Interference probing of rRNA with snoRNPs: a novel approach for functional mapping of RNA in vivo. RNA (2004) 0.97
Diversity of Antisense and Other Non-Coding RNAs in Archaea Revealed by Comparative Small RNA Sequencing in Four Pyrobaculum Species. Front Microbiol (2012) 0.95
Comparative genomic and transcriptional analyses of CRISPR systems across the genus Pyrobaculum. Front Microbiol (2012) 0.93
Discovery of Pyrobaculum small RNA families with atypical pseudouridine guide RNA features. RNA (2012) 0.92
Depletion of free 30S ribosomal subunits in Escherichia coli by expression of RNA containing Shine-Dalgarno-like sequences. J Bacteriol (2002) 0.92
Fine-tuning of translation termination efficiency in Saccharomyces cerevisiae involves two factors in close proximity to the exit tunnel of the ribosome. Genetics (2007) 0.89
Strong dependence between functional domains in a dual-function snoRNA infers coupling of rRNA processing and modification events. Nucleic Acids Res (2010) 0.86
The U1 snRNA hairpin II as a RNA affinity tag for selecting snoRNP complexes. Methods Enzymol (2007) 0.81
Molecular cloning and pharmacological characterization of two novel GnRH receptors in the lamprey (Petromyzon marinus). Endocrinology (2012) 0.81
Evolution of vertebrate GnRH receptors from the perspective of a Basal vertebrate. Front Endocrinol (Lausanne) (2012) 0.80
Expression of three GnRH receptors in specific tissues in male and female sea lampreys Petromyzon marinus at three distinct life stages. Front Neurosci (2013) 0.79
Is secretoneurin a new hormone? Gen Comp Endocrinol (2011) 0.79
Identification and expression of GnRH2 and GnRH3 in the black sea bass (Centropristis striata), a hermaphroditic teleost. Fish Physiol Biochem (2014) 0.75