Published in RNA on September 08, 2006
tRNA over-expression in breast cancer and functional consequences. Nucleic Acids Res (2009) 2.08
Identification of recognition residues for ligation-based detection and quantitation of pseudouridine and N6-methyladenosine. Nucleic Acids Res (2007) 1.66
Use of DNAzymes for site-specific analysis of ribonucleotide modifications. RNA (2007) 1.12
Efficient DNA ligation in DNA-RNA hybrid helices by Chlorella virus DNA ligase. Nucleic Acids Res (2013) 0.94
Targeted 2'-O methylation at a nucleotide within the pseudoknot of telomerase RNA reduces telomerase activity in vivo. Mol Cell Biol (2010) 0.92
Pseudouridines in spliceosomal snRNAs. Protein Cell (2011) 0.88
Anomalous electrophoretic migration of newly synthesized ribosomal RNAs and their precursors from cells with DKC1 mutations. FEBS Lett (2009) 0.87
RTL-P: a sensitive approach for detecting sites of 2'-O-methylation in RNA molecules. Nucleic Acids Res (2012) 0.85
Detecting RNA modifications in the epitranscriptome: predict and validate. Nat Rev Genet (2017) 0.80
Template-directed ligation of tethered mononucleotides by t4 DNA ligase for kinase ribozyme selection. PLoS One (2010) 0.78
Assignment of 2'-O-methyltransferases to modification sites on the mammalian mitochondrial large subunit 16 S ribosomal RNA (rRNA). J Biol Chem (2014) 0.76
Detection and quantification of RNA 2'-O-methylation and pseudouridylation. Methods (2016) 0.75
Quantitative analysis of RNA modifications. Methods Mol Biol (2010) 0.75
Erythromycin resistance by ribosome modification. Antimicrob Agents Chemother (1995) 9.40
Methylation as a crucial step in plant microRNA biogenesis. Science (2005) 7.16
A computational screen for methylation guide snoRNAs in yeast. Science (1999) 6.43
The small nucleolar RNAs. Annu Rev Biochem (1995) 6.26
Human and bacterial oxidative demethylases repair alkylation damage in both RNA and DNA. Nature (2003) 5.49
The RNA Modification Database: 1999 update. Nucleic Acids Res (1999) 4.97
Small nucleolar RNA-guided post-transcriptional modification of cellular RNAs. EMBO J (2001) 3.89
RNA-guided nucleotide modification of ribosomal and other RNAs. J Biol Chem (2002) 3.59
Accumulation of unstable promoter-associated transcripts upon loss of the nuclear exosome subunit Rrp6p in Saccharomyces cerevisiae. Proc Natl Acad Sci U S A (2006) 3.49
A new method for detecting sites of 2'-O-methylation in RNA molecules. RNA (1997) 3.17
Codon recognition patterns as deduced from sequences of the complete set of transfer RNA species in Mycoplasma capricolum. Resemblance to mitochondria. J Mol Biol (1989) 3.17
Genome-wide searching for pseudouridylation guide snoRNAs: analysis of the Saccharomyces cerevisiae genome. Nucleic Acids Res (2004) 2.94
Decoding the genome: a modified view. Nucleic Acids Res (2004) 2.90
A new mechanism for chloramphenicol, florfenicol and clindamycin resistance: methylation of 23S ribosomal RNA at A2503. Mol Microbiol (2005) 2.89
Prevention of translational frameshifting by the modified nucleoside 1-methylguanosine. Science (1989) 2.43
AlkB restores the biological function of mRNA and tRNA inactivated by chemical methylation. Mol Cell (2004) 2.26
Enhanced detection and distinction of RNA by enzymatic probe ligation. Nat Biotechnol (2000) 1.90
A novel method for the determination of post-transcriptional modification in RNA by mass spectrometry. Nucleic Acids Res (1993) 1.85
Extensive 3' modification of plant small RNAs is modulated by helper component-proteinase expression. Proc Natl Acad Sci U S A (2005) 1.82
Polynucleotide ligase-catalyzed joining of deoxyribo-oligonucleotides on ribopolynucleotide templates and of ribo-oligonucleotides on deoxyribopolynucleotide templates. Proc Natl Acad Sci U S A (1970) 1.70
Detection and quantitation of RNA base modifications. RNA (2004) 1.50
Macrolide antibiotics: binding site, mechanism of action, resistance. Curr Top Med Chem (2003) 1.37
Induction of ribosome methylation in MLS-resistant Streptococcus pneumoniae by macrolides and ketolides. Microb Drug Resist (1999) 1.30
Isolation of kasugamycin resistant mutants in the 16 S ribosomal RNA of Escherichia coli. J Mol Biol (1999) 1.29
Spb1p-directed formation of Gm2922 in the ribosome catalytic center occurs at a late processing stage. Mol Cell (2004) 1.19
Transfer RNA modification status influences retroviral ribosomal frameshifting. Virology (1999) 1.18
A sparsomycin-resistant mutant of Halobacterium salinarium lacks a modification at nucleotide U2603 in the peptidyl transferase centre of 23 S rRNA. J Mol Biol (1996) 1.09
Selective detection of ribose-methylated nucleotides in RNA by a mass spectrometry-based method. Nucleic Acids Res (1999) 0.84
Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine. Science (2011) 14.29
Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA. Science (2011) 13.16
Selective chemical labeling reveals the genome-wide distribution of 5-hydroxymethylcytosine. Nat Biotechnol (2010) 9.01
Tet2 loss leads to increased hematopoietic stem cell self-renewal and myeloid transformation. Cancer Cell (2011) 7.37
Base-resolution analysis of 5-hydroxymethylcytosine in the mammalian genome. Cell (2012) 7.09
N6-methyladenosine in nuclear RNA is a major substrate of the obesity-associated FTO. Nat Chem Biol (2011) 5.96
An evolutionarily conserved mechanism for controlling the efficiency of protein translation. Cell (2010) 4.45
ALKBH5 is a mammalian RNA demethylase that impacts RNA metabolism and mouse fertility. Mol Cell (2012) 4.18
5-hmC-mediated epigenetic dynamics during postnatal neurodevelopment and aging. Nat Neurosci (2011) 4.15
Tissue-specific differences in human transfer RNA expression. PLoS Genet (2006) 4.10
rRNA modifications and ribosome function. Trends Biochem Sci (2002) 4.01
RNA-guided nucleotide modification of ribosomal and other RNAs. J Biol Chem (2002) 3.59
Genome-wide profiling of 5-formylcytosine reveals its roles in epigenetic priming. Cell (2013) 3.13
Codon-usage-based inhibition of HIV protein synthesis by human schlafen 11. Nature (2012) 2.98
Genome-wide searching for pseudouridylation guide snoRNAs: analysis of the Saccharomyces cerevisiae genome. Nucleic Acids Res (2004) 2.94
General acid catalysis by the hepatitis delta virus ribozyme. Nat Chem Biol (2005) 2.88
Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution. Nat Genet (2013) 2.76
Basis for structural diversity in homologous RNAs. Science (2004) 2.70
Crystal structure of the specificity domain of ribonuclease P. Nature (2003) 2.69
Innate immune and chemically triggered oxidative stress modifies translational fidelity. Nature (2009) 2.50
Selective charging of tRNA isoacceptors induced by amino-acid starvation. EMBO Rep (2005) 2.48
Thymine DNA glycosylase specifically recognizes 5-carboxylcytosine-modified DNA. Nat Chem Biol (2012) 2.45
Structure of a bacterial ribonuclease P holoenzyme in complex with tRNA. Nature (2010) 2.40
Phosphoglycerate mutase 1 coordinates glycolysis and biosynthesis to promote tumor growth. Cancer Cell (2012) 2.39
Ribosome structure and activity are altered in cells lacking snoRNPs that form pseudouridines in the peptidyl transferase center. Mol Cell (2003) 2.37
Generation and replication-dependent dilution of 5fC and 5caC during mouse preimplantation development. Cell Res (2011) 2.36
Leucine-tRNA initiates at CUG start codons for protein synthesis and presentation by MHC class I. Science (2012) 2.30
Crystal structure of the RNA component of bacterial ribonuclease P. Nature (2005) 2.10
tRNA over-expression in breast cancer and functional consequences. Nucleic Acids Res (2009) 2.08
Diversity of tRNA genes in eukaryotes. Nucleic Acids Res (2006) 2.05
The 2.5 Å structure of CD1c in complex with a mycobacterial lipid reveals an open groove ideally suited for diverse antigen presentation. Immunity (2010) 2.02
New bioinformatic tools for analysis of nucleotide modifications in eukaryotic rRNA. RNA (2007) 1.98
Nascent peptide in the ribosome exit tunnel affects functional properties of the A-site of the peptidyl transferase center. Mol Cell (2011) 1.96
rRNA modifications in an intersubunit bridge of the ribosome strongly affect both ribosome biogenesis and activity. Mol Cell (2007) 1.95
Sensitive and specific single-molecule sequencing of 5-hydroxymethylcytosine. Nat Methods (2011) 1.90
RNA catalyses nuclear pre-mRNA splicing. Nature (2013) 1.86
Exploring the regulation of tRNA distribution on the genomic scale. J Mol Biol (2004) 1.80
The AlkB domain of mammalian ABH8 catalyzes hydroxylation of 5-methoxycarbonylmethyluridine at the wobble position of tRNA. Angew Chem Int Ed Engl (2010) 1.76
Single-molecule studies highlight conformational heterogeneity in the early folding steps of a large ribozyme. Proc Natl Acad Sci U S A (2004) 1.69
Identification of recognition residues for ligation-based detection and quantitation of pseudouridine and N6-methyladenosine. Nucleic Acids Res (2007) 1.66
The 3D rRNA modification maps database: with interactive tools for ribosome analysis. Nucleic Acids Res (2007) 1.65
Genome-wide analysis of tRNA charging and activation of the eIF2 kinase Gcn2p. J Biol Chem (2009) 1.64
The absence of NF-kappaB-mediated inhibition of c-Jun N-terminal kinase activation contributes to tumor necrosis factor alpha-induced apoptosis. Mol Cell Biol (2002) 1.61
A role for tRNA modifications in genome structure and codon usage. Cell (2012) 1.57
Real-time RNA profiling within a single bacterium. Proc Natl Acad Sci U S A (2005) 1.56
RNA folding: models and perspectives. Curr Opin Struct Biol (2003) 1.56
Intercellular transfer of the cellular prion protein. J Biol Chem (2002) 1.54
Structural inference of native and partially folded RNA by high-throughput contact mapping. Proc Natl Acad Sci U S A (2008) 1.54
New strategies for exploring RNA's 2'-OH expose the importance of solvent during group II intron catalysis. Chem Biol (2004) 1.53
Synthetic antibodies for specific recognition and crystallization of structured RNA. Proc Natl Acad Sci U S A (2007) 1.51
Genome-wide identification and quantitative analysis of cleaved tRNA fragments induced by cellular stress. J Biol Chem (2012) 1.47
Loss of rRNA modifications in the decoding center of the ribosome impairs translation and strongly delays pre-rRNA processing. RNA (2009) 1.41
RNA-modifying machines in archaea. Mol Microbiol (2003) 1.40
Probing N6-methyladenosine RNA modification status at single nucleotide resolution in mRNA and long noncoding RNA. RNA (2013) 1.37
Folding of noncoding RNAs during transcription facilitated by pausing-induced nonnative structures. Proc Natl Acad Sci U S A (2007) 1.36
Iron-catalysed oxidation intermediates captured in a DNA repair dioxygenase. Nature (2010) 1.36
Pharmacological dissection of the human gastro-oesophageal segment into three sphincteric components. J Physiol (2007) 1.35
The helicase Has1p is required for snoRNA release from pre-rRNA. Mol Cell Biol (2006) 1.34
Genome-wide analysis of N1-methyl-adenosine modification in human tRNAs. RNA (2010) 1.33
A multicenter application and evaluation of the oxford classification of IgA nephropathy in adult chinese patients. Am J Kidney Dis (2012) 1.32
Structure of a folding intermediate reveals the interplay between core and peripheral elements in RNA folding. J Mol Biol (2005) 1.31
A second divalent metal ion in the group II intron reaction center. Chem Biol (2007) 1.29
Cellular dynamics of RNA modification. Acc Chem Res (2011) 1.28
Crystal structure of the catalytic core of an RNA-polymerase ribozyme. Science (2009) 1.27
Nucleotide modifications in three functionally important regions of the Saccharomyces cerevisiae ribosome affect translation accuracy. Nucleic Acids Res (2009) 1.27
The electrostatic character of the ribosomal surface enables extraordinarily rapid target location by ribotoxins. Nat Struct Mol Biol (2006) 1.26
Hepatitis C virus infections and genotypes in China. Hepatobiliary Pancreat Dis Int (2002) 1.25
Enhanced 5-methylcytosine detection in single-molecule, real-time sequencing via Tet1 oxidation. BMC Biol (2013) 1.24
High levels of tRNA abundance and alteration of tRNA charging by bortezomib in multiple myeloma. Biochem Biophys Res Commun (2009) 1.23
The DEAH box ATPases Prp16 and Prp43 cooperate to proofread 5' splice site cleavage during pre-mRNA splicing. Mol Cell (2010) 1.23
A self-defeating anabolic program leads to β-cell apoptosis in endoplasmic reticulum stress-induced diabetes via regulation of amino acid flux. J Biol Chem (2013) 1.22
Carbon nanotube based high resolution holograms. Adv Mater (2012) 1.21
Integration of general amino acid control and target of rapamycin (TOR) regulatory pathways in nitrogen assimilation in yeast. J Biol Chem (2010) 1.20
Analysis of RNA base modification and structural rearrangement by single-molecule real-time detection of reverse transcription. J Nanobiotechnology (2013) 1.19
Phase-changing sacrificial materials for solvent bonding of high-performance polymeric capillary electrophoresis microchips. Anal Chem (2005) 1.19
A portable RNA sequence whose recognition by a synthetic antibody facilitates structural determination. Nat Struct Mol Biol (2010) 1.18
Identification of catalytic metal ion ligands in ribozymes. Methods (2009) 1.18
Utility of contrast-enhanced ultrasound for evaluation of thyroid nodules. Thyroid (2010) 1.18
Nucleobase-mediated general acid-base catalysis in the Varkud satellite ribozyme. Proc Natl Acad Sci U S A (2010) 1.18
High-resolution N(6) -methyladenosine (m(6) A) map using photo-crosslinking-assisted m(6) A sequencing. Angew Chem Int Ed Engl (2014) 1.18
Synthesis of the o-quinones and other oxidized metabolites of polycyclic aromatic hydrocarbons implicated in carcinogenesis. J Org Chem (2004) 1.17
N6-methyladenosine–encoded epitranscriptomics. Nat Struct Mol Biol (2016) 1.17
Structure of ribonuclease P--a universal ribozyme. Curr Opin Struct Biol (2006) 1.16
Plasmonic band gaps and waveguide effects in carbon nanotube arrays based metamaterials. ACS Nano (2011) 1.15
Structure-activity relationships for inhibition of human 5alpha-reductases by polyphenols. Biochem Pharmacol (2002) 1.14