Published in J Bacteriol on September 01, 2003
Do all modifications benefit all tRNAs? FEBS Lett (2010) 1.46
Mapping of Complete Set of Ribose and Base Modifications of Yeast rRNA by RP-HPLC and Mung Bean Nuclease Assay. PLoS One (2016) 1.39
Biosynthesis of wyosine derivatives in tRNA: an ancient and highly diverse pathway in Archaea. Mol Biol Evol (2010) 1.28
Cold adaptation in the Antarctic Archaeon Methanococcoides burtonii involves membrane lipid unsaturation. J Bacteriol (2004) 1.09
Post-transcriptional modifications in the small subunit ribosomal RNA from Thermotoga maritima, including presence of a novel modified cytidine. RNA (2007) 1.05
The Cm56 tRNA modification in archaea is catalyzed either by a specific 2'-O-methylase, or a C/D sRNP. RNA (2005) 1.03
Biosynthesis of 4-thiouridine in tRNA in the methanogenic archaeon Methanococcus maripaludis. J Biol Chem (2012) 1.01
Mechanism of dihydrouridine synthase 2 from yeast and the importance of modifications for efficient tRNA reduction. J Biol Chem (2009) 1.01
Formation of m2G6 in Methanocaldococcus jannaschii tRNA catalyzed by the novel methyltransferase Trm14. Nucleic Acids Res (2011) 0.96
Marine extremophiles: a source of hydrolases for biotechnological applications. Mar Drugs (2015) 0.90
An evolutionary approach uncovers a diverse response of tRNA 2-thiolation to elevated temperatures in yeast. RNA (2014) 0.88
Biosynthesis of wyosine derivatives in tRNA(Phe) of Archaea: role of a remarkable bifunctional tRNA(Phe):m1G/imG2 methyltransferase. RNA (2014) 0.84
C/D box sRNA-guided 2'-O-methylation patterns of archaeal rRNA molecules. BMC Genomics (2015) 0.83
Ribosomal frameshifting and transcriptional slippage: From genetic steganography and cryptography to adventitious use. Nucleic Acids Res (2016) 0.82
Bacterial transfer RNAs. FEMS Microbiol Rev (2015) 0.81
Identification of a new ribose methylation in the 18S rRNA of S. cerevisiae. Nucleic Acids Res (2015) 0.79
A novel family of integrases associated with prophages and genomic islands integrated within the tRNA-dihydrouridine synthase A (dusA) gene. Nucleic Acids Res (2015) 0.76
Chemical and Conformational Diversity of Modified Nucleosides Affects tRNA Structure and Function. Biomolecules (2017) 0.75
MD simulation studies to investigate iso-energetic conformational behaviour of modified nucleosides m(2)G and m(2) 2G present in tRNA. Comput Struct Biotechnol J (2013) 0.75
Proteomic insights into the temperature responses of a cold-adaptive archaeon Methanolobus psychrophilus R15. Extremophiles (2014) 0.75
Compilation of tRNA sequences and sequences of tRNA genes. Nucleic Acids Res (1998) 10.74
Summary: the modified nucleosides of RNA. Nucleic Acids Res (1994) 9.76
Biochemical and physical characterization of an unmodified yeast phenylalanine transfer RNA transcribed in vitro. Proc Natl Acad Sci U S A (1988) 7.76
Identification of 86 candidates for small non-messenger RNAs from the archaeon Archaeoglobus fulgidus. Proc Natl Acad Sci U S A (2002) 7.04
The RNA Modification Database: 1999 update. Nucleic Acids Res (1999) 4.97
A computer-simulated restriction fragment length polymorphism analysis of bacterial small-subunit rRNA genes: efficacy of selected tetrameric restriction enzymes for studies of microbial diversity in nature. Appl Environ Microbiol (1996) 3.53
Codon recognition patterns as deduced from sequences of the complete set of transfer RNA species in Mycoplasma capricolum. Resemblance to mitochondria. J Mol Biol (1989) 3.17
A guided tour: small RNA function in Archaea. Mol Microbiol (2001) 3.03
Preparation and enzymatic hydrolysis of DNA and RNA for mass spectrometry. Methods Enzymol (1990) 3.02
Analysis of RNA hydrolyzates by liquid chromatography-mass spectrometry. Methods Enzymol (1990) 2.56
The importance of being modified: roles of modified nucleosides and Mg2+ in RNA structure and function. Prog Nucleic Acid Res Mol Biol (1996) 2.43
Characterization of fully 2'-modified oligoribonucleotide hetero- and homoduplex hybridization and nuclease sensitivity. Nucleic Acids Res (1995) 2.30
Complete analysis of tRNA-modified nucleosides by high-performance liquid chromatography: the 29 modified nucleosides of Salmonella typhimurium and Escherichia coli tRNA. Anal Biochem (1983) 2.29
Effect of growth rate and starvation-survival on the viability and stability of a psychrophilic marine bacterium. Appl Environ Microbiol (1989) 1.87
The role of posttranscriptional modification in stabilization of transfer RNA from hyperthermophiles. Biochemistry (1994) 1.86
The effect of growth temperatures on the in vivo ribose methylation of Bacillus stearothermophilus transfer RNA. Arch Biochem Biophys (1973) 1.81
Mechanisms of thermal adaptation revealed from the genomes of the Antarctic Archaea Methanogenium frigidum and Methanococcoides burtonii. Genome Res (2003) 1.75
Posttranscriptional modifications in 16S and 23S rRNAs of the archaeal hyperthermophile Sulfolobus solfataricus. J Bacteriol (1998) 1.59
Role of ribothymidine in the thermal stability of transfer RNA as monitored by proton magnetic resonance. Nucleic Acids Res (1979) 1.59
Posttranscriptional modification of tRNA in thermophilic archaea (Archaebacteria). J Bacteriol (1991) 1.57
Presence and location of modified nucleotides in Escherichia coli tmRNA: structural mimicry with tRNA acceptor branches. EMBO J (1998) 1.56
Post-transcriptional modification in archaeal tRNAs: identities and phylogenetic relations of nucleotides from mesophilic and hyperthermophilic Methanococcales. Nucleic Acids Res (2001) 1.52
Conformational flexibility in RNA: the role of dihydrouridine. Nucleic Acids Res (1996) 1.41
RNA-modifying machines in archaea. Mol Microbiol (2003) 1.40
Purification and thermal stability of several amino acid-specific tRNAs from an extreme thermophile, Thermus thermophilus HB8. J Biochem (1980) 1.34
Phylogeny of the conserved 3' terminal structure of the RNA of small ribosomal subunits. Nucleic Acids Res (1984) 1.33
Probing structural differences between native and in vitro transcribed Escherichia coli valine transfer RNA: evidence for stable base modification-dependent conformers. Nucleic Acids Res (1993) 1.31
Structure of wye (Yt base) and wyosine (Yt) from Torulopsis utilis phenylalanine transfer ribonucleic acid. Biochemistry (1976) 1.30
Redox ribonucleosides. Isolation and characterization of 5-hydroxyuridine, 8-hydroxyguanosine, and 8-hydroxyadenosine from Torula yeast RNA. J Biol Chem (1992) 1.28
Heat-induced stability of tRNA from an extreme thermophile, Thermus thermophilus. Biochem Biophys Res Commun (1976) 1.27
Posttranscriptional modification of tRNA in psychrophilic bacteria. J Bacteriol (1997) 1.25
Two tRNAIle1 species from an extreme thermophile, Thermus thermophilus HB8: effect of 2-thiolation of ribothymidine on the thermostability of tRNA. Biochemistry (1985) 1.17
Specific binding of 8-oxoguanine-containing RNA to polynucleotide phosphorylase protein. Biochemistry (2001) 1.06
Posttranscriptional modification of transfer RNA in the submarine hyperthermophile Pyrolobus fumarii. Nucleic Acids Symp Ser (2000) 1.04
Structure determination of a new fluorescent tricyclic nucleoside from archaebacterial tRNA. Nucleic Acids Res (1987) 1.01
Cold stress response in Archaea. Extremophiles (2000) 1.00
Thermally induced biosynthesis of 2'-O-methylguanosine in tRNA from an extreme thermophile, Thermus thermophilus HB27. Proc Natl Acad Sci U S A (1980) 0.98
Structure determination of two new amino acid-containing derivatives of adenosine from tRNA of thermophilic bacteria and archaea. Nucleic Acids Res (1992) 0.98
Effects of ribosomes and intracellular solutes on activities and stabilities of elongation factor 2 proteins from psychrotolerant and thermophilic methanogens. J Bacteriol (2001) 0.92
Quantitative measurement of dihydrouridine in RNA using isotope dilution liquid chromatography-mass spectrometry (LC/MS). Nucleic Acids Res (1996) 0.90
Stetteria hydrogenophila, gen. nov. and sp. nov., a novel mixotrophic sulfur-dependent crenarchaeote isolated from Milos, Greece. Extremophiles (1997) 0.87
Thermospray liquid chromatography/mass spectrometry in deuterium oxide. Anal Chem (1988) 0.83
The genomic basis of trophic strategy in marine bacteria. Proc Natl Acad Sci U S A (2009) 3.72
The RNA Modification Database, RNAMDB: 2011 update. Nucleic Acids Res (2010) 3.42
RNA polymerase II-TFIIB structure and mechanism of transcription initiation. Nature (2009) 2.98
Biosynthetic labeling of RNA with uracil phosphoribosyltransferase allows cell-specific microarray analysis of mRNA synthesis and decay. Nat Biotechnol (2005) 2.92
Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean. Proc Natl Acad Sci U S A (2013) 2.27
Cold-adapted enzymes. Annu Rev Biochem (2006) 2.21
Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-A resolution. Proc Natl Acad Sci U S A (2010) 1.99
Virophage control of antarctic algal host-virus dynamics. Proc Natl Acad Sci U S A (2011) 1.98
An aminoacyl-tRNA synthetase that specifically activates pyrrolysine. Proc Natl Acad Sci U S A (2004) 1.96
Structural basis of highly conserved ribosome recycling in eukaryotes and archaea. Nature (2012) 1.86
Mechanisms of thermal adaptation revealed from the genomes of the Antarctic Archaea Methanogenium frigidum and Methanococcoides burtonii. Genome Res (2003) 1.75
Localization of eukaryote-specific ribosomal proteins in a 5.5-Å cryo-EM map of the 80S eukaryotic ribosome. Proc Natl Acad Sci U S A (2010) 1.68
Structure of an archaeal RNA polymerase. J Mol Biol (2007) 1.65
An integrative study of a meromictic lake ecosystem in Antarctica. ISME J (2010) 1.62
Global biogeography of SAR11 marine bacteria. Mol Syst Biol (2012) 1.42
Asexually produced Cape honeybee queens (Apis mellifera capensis) reproduce sexually. J Hered (2011) 1.40
The genome sequence of the psychrophilic archaeon, Methanococcoides burtonii: the role of genome evolution in cold adaptation. ISME J (2009) 1.40
The RPB7 orthologue E' is required for transcriptional activity of a reconstituted archaeal core enzyme at low temperatures and stimulates open complex formation. J Biol Chem (2007) 1.36
Activation of archaeal transcription by recruitment of the TATA-binding protein. Proc Natl Acad Sci U S A (2003) 1.35
A metaproteomic assessment of winter and summer bacterioplankton from Antarctic Peninsula coastal surface waters. ISME J (2012) 1.34
A truncated aminoacyl-tRNA synthetase modifies RNA. Proc Natl Acad Sci U S A (2004) 1.32
Influence of phylogeny on posttranscriptional modification of rRNA in thermophilic prokaryotes: the complete modification map of 16S rRNA of Thermus thermophilus. Biochemistry (2006) 1.27
A sodium ion-dependent A1AO ATP synthase from the hyperthermophilic archaeon Pyrococcus furiosus. FEBS J (2007) 1.23
The role of planktonic Flavobacteria in processing algal organic matter in coastal East Antarctica revealed using metagenomics and metaproteomics. Environ Microbiol (2012) 1.19
Predicted roles for hypothetical proteins in the low-temperature expressed proteome of the Antarctic archaeon Methanococcoides burtonii. J Proteome Res (2005) 1.18
Structure-function analysis of the RNA polymerase cleft loops elucidates initial transcription, DNA unwinding and RNA displacement. Nucleic Acids Res (2007) 1.17
Metaproteogenomic analysis of a dominant green sulfur bacterium from Ace Lake, Antarctica. ISME J (2010) 1.17
A proteomic determination of cold adaptation in the Antarctic archaeon, Methanococcoides burtonii. Mol Microbiol (2004) 1.16
High level of intergenera gene exchange shapes the evolution of haloarchaea in an isolated Antarctic lake. Proc Natl Acad Sci U S A (2013) 1.16
A metagenomic assessment of winter and summer bacterioplankton from Antarctica Peninsula coastal surface waters. ISME J (2012) 1.15
A novel archaeal transcriptional regulator of heat shock response. J Biol Chem (2002) 1.14
Detection of the common RNA nucleoside pseudouridine in mixtures of oligonucleotides by mass spectrometry. Anal Chem (2005) 1.14
Shuttle vector-based transformation system for Pyrococcus furiosus. Appl Environ Microbiol (2010) 1.13
TrmB, a sugar-specific transcriptional regulator of the trehalose/maltose ABC transporter from the hyperthermophilic archaeon Thermococcus litoralis. J Biol Chem (2002) 1.13
Cold adaptation in the marine bacterium, Sphingopyxis alaskensis, assessed using quantitative proteomics. Environ Microbiol (2010) 1.13
SOS: a simple interactive program for ab initio oligonucleotide sequencing by mass spectrometry. J Am Soc Mass Spectrom (2002) 1.10
Analysis of the open region and of DNA-protein contacts of archaeal RNA polymerase transcription complexes during transition from initiation to elongation. J Biol Chem (2003) 1.10
Normalization and statistical analysis of quantitative proteomics data generated by metabolic labeling. Mol Cell Proteomics (2009) 1.10
Cold adaptation in the Antarctic Archaeon Methanococcoides burtonii involves membrane lipid unsaturation. J Bacteriol (2004) 1.09
Structures of two new "minimalist" modified nucleosides from archaeal tRNA. Bioorg Chem (2004) 1.09
Key microbial drivers in Antarctic aquatic environments. FEMS Microbiol Rev (2012) 1.09
SurR: a transcriptional activator and repressor controlling hydrogen and elemental sulphur metabolism in Pyrococcus furiosus. Mol Microbiol (2008) 1.09
Topography of the euryarchaeal transcription initiation complex. J Biol Chem (2003) 1.08
Transcription factor E is a part of transcription elongation complexes. J Biol Chem (2007) 1.07
Protein-protein interactions in the archaeal transcriptional machinery: binding studies of isolated RNA polymerase subunits and transcription factors. J Biol Chem (2006) 1.05
Biology of the cold adapted archaeon, Methanococcoides burtonii determined by proteomics using liquid chromatography-tandem mass spectrometry. J Proteome Res (2004) 1.05
A polymerase III-like reinitiation mechanism is operating in regulation of histone expression in archaea. Mol Microbiol (2007) 1.05
Post-transcriptional modifications in the small subunit ribosomal RNA from Thermotoga maritima, including presence of a novel modified cytidine. RNA (2007) 1.05
A "gain of function" mutation in a protein mediates production of novel modified nucleosides. EMBO J (2005) 1.05
A Pyrococcus homolog of the leucine-responsive regulatory protein, LrpA, inhibits transcription by abrogating RNA polymerase recruitment. Nucleic Acids Res (2002) 1.03
TrmB, a sugar sensing regulator of ABC transporter genes in Pyrococcus furiosus exhibits dual promoter specificity and is controlled by different inducers. Mol Microbiol (2005) 1.00
Carbon and nitrogen substrate utilization in the marine bacterium Sphingopyxis alaskensis strain RB2256. ISME J (2009) 1.00
Advection shapes Southern Ocean microbial assemblages independent of distance and environment effects. Nat Commun (2013) 0.99
Metagenomic insights into strategies of carbon conservation and unusual sulfur biogeochemistry in a hypersaline Antarctic lake. ISME J (2013) 0.98
Archaeal transcription: function of an alternative transcription factor B from Pyrococcus furiosus. J Bacteriol (2007) 0.97
Evolution of two modes of intrinsic RNA polymerase transcript cleavage. J Biol Chem (2011) 0.97
The role of TrmB and TrmB-like transcriptional regulators for sugar transport and metabolism in the hyperthermophilic archaeon Pyrococcus furiosus. Arch Microbiol (2008) 0.96
Defining the response of a microorganism to temperatures that span its complete growth temperature range (-2°C to 28°C) using multiplex quantitative proteomics. Environ Microbiol (2011) 0.96
Methanosarcina baltica, sp. nov., a novel methanogen isolated from the Gotland Deep of the Baltic Sea. Extremophiles (2002) 0.95
SurR regulates hydrogen production in Pyrococcus furiosus by a sulfur-dependent redox switch. Mol Microbiol (2010) 0.94
Thermodynamic activation properties of elongation factor 2 (EF-2) proteins from psychrotolerant and thermophilic Archaea. Extremophiles (2002) 0.94
Experimental manipulation of ovary activation and gene expression in honey bee (Apis mellifera) queens and workers: testing hypotheses of reproductive regulation. J Exp Zool A Ecol Genet Physiol (2007) 0.94
Serpins in unicellular Eukarya, Archaea, and Bacteria: sequence analysis and evolution. J Mol Evol (2004) 0.93
Crystal structure of the archaeal heat shock regulator from Pyrococcus furiosus: a molecular chimera representing eukaryal and bacterial features. J Mol Biol (2007) 0.91
The RNA polymerase trigger loop functions in all three phases of the transcription cycle. Nucleic Acids Res (2013) 0.90
Posterolateral surface electrical stimulation of abdominal expiratory muscles to enhance cough in spinal cord injury. Neurorehabil Neural Repair (2010) 0.90
Improved thermal stability and activity in the cold-adapted lipase B from Candida antarctica following chemical modification with oxidized polysaccharides. Extremophiles (2005) 0.90
Proteomic characterization of archaeal ribosomes reveals the presence of novel archaeal-specific ribosomal proteins. J Mol Biol (2010) 0.90
Global proteomic analysis of the insoluble, soluble, and supernatant fractions of the psychrophilic archaeon Methanococcoides burtonii. Part I: the effect of growth temperature. J Proteome Res (2010) 0.90
Isolation and posttranscriptional modification analysis of native BC1 RNA from mouse brain. RNA Biol (2007) 0.89
Promiscuous behaviour of archaeal ribosomal proteins: implications for eukaryotic ribosome evolution. Nucleic Acids Res (2012) 0.89
Cold adaptation of the Antarctic archaeon, Methanococcoides burtonii assessed by proteomics using ICAT. J Proteome Res (2005) 0.89
Biogeographic partitioning of Southern Ocean microorganisms revealed by metagenomics. Environ Microbiol (2012) 0.89
Structure and function of cold shock proteins in archaea. J Bacteriol (2007) 0.88
Maternity of emergency queens in the Cape honey bee, Apis mellifera capensis. Mol Ecol (2010) 0.88
Activation of archaeal transcription mediated by recruitment of transcription factor B. J Biol Chem (2012) 0.87
A novel approach for enhancing the catalytic efficiency of a protease at low temperature: reduction in substrate inhibition by chemical modification. Biotechnol Bioeng (2009) 0.87
Proteomic and computational analysis of secreted proteins with type I signal peptides from the Antarctic archaeon Methanococcoides burtonii. J Proteome Res (2006) 0.87
The TrmB family: a versatile group of transcriptional regulators in Archaea. Extremophiles (2014) 0.86
Characterization of the TrmB-like protein, PF0124, a TGM-recognizing global transcriptional regulator of the hyperthermophilic archaeon Pyrococcus furiosus. Mol Microbiol (2007) 0.85
N6-Acetyladenosine: a new modified nucleoside from Methanopyrus kandleri tRNA. FEBS Lett (2005) 0.85
Analysis of the surface proteins of Acidithiobacillus ferrooxidans strain SP5/1 and the new, pyrite-oxidizing Acidithiobacillus isolate HV2/2, and their possible involvement in pyrite oxidation. Arch Microbiol (2011) 0.85
The archaeal RNA polymerase subunit P and the eukaryotic polymerase subunit Rpb12 are interchangeable in vivo and in vitro. Mol Microbiol (2008) 0.85
Differential signal transduction via TrmB, a sugar sensing transcriptional repressor of Pyrococcus furiosus. Mol Microbiol (2007) 0.85
Genetic engineering of Pyrococcus furiosus to use chitin as a carbon source. BMC Biotechnol (2013) 0.85
Tandem mass spectrometry for structure assignments of wye nucleosides from transfer RNA. Nucleosides Nucleotides Nucleic Acids (2004) 0.84
Global proteomic analysis of the insoluble, soluble, and supernatant fractions of the psychrophilic archaeon Methanococcoides burtonii. Part II: the effect of different methylated growth substrates. J Proteome Res (2010) 0.84
Remarkable resistance to UVB of the marine bacterium Photobacterium angustum explained by an unexpected role of photolyase. Photochem Photobiol Sci (2009) 0.84