PubRank

John B Hogenesch

Author PubWeight™ 233.18‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 A gene atlas of the mouse and human protein-encoding transcriptomes. Proc Natl Acad Sci U S A 2004 44.81
2 Large-scale analysis of the human and mouse transcriptomes. Proc Natl Acad Sci U S A 2002 25.47
3 Coordinated transcription of key pathways in the mouse by the circadian clock. Cell 2002 14.07
4 BMAL1 and CLOCK, two essential components of the circadian clock, are involved in glucose homeostasis. PLoS Biol 2004 6.72
5 Genome-wide analysis of cAMP-response element binding protein occupancy, phosphorylation, and target gene activation in human tissues. Proc Natl Acad Sci U S A 2005 6.26
6 Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM). Bioinformatics 2011 6.20
7 A functional genomics strategy reveals Rora as a component of the mammalian circadian clock. Neuron 2004 5.71
8 ESRP1 and ESRP2 are epithelial cell-type-specific regulators of FGFR2 splicing. Mol Cell 2009 5.03
9 Harmonics of circadian gene transcription in mammals. PLoS Genet 2009 4.97
10 Circadian rhythms from flies to human. Nature 2002 4.95
11 TORCs: transducers of regulated CREB activity. Mol Cell 2003 4.42
12 Melanopsin (Opn4) requirement for normal light-induced circadian phase shifting. Science 2002 4.24
13 Melanopsin is required for non-image-forming photic responses in blind mice. Science 2003 4.22
14 A heat-sensitive TRP channel expressed in keratinocytes. Science 2002 3.85
15 The Gene Wiki: community intelligence applied to human gene annotation. Nucleic Acids Res 2009 3.51
16 JTK_CYCLE: an efficient nonparametric algorithm for detecting rhythmic components in genome-scale data sets. J Biol Rhythms 2010 3.42
17 Genome-wide expression analysis in Drosophila reveals genes controlling circadian behavior. J Neurosci 2002 3.34
18 A genome-wide RNAi screen for modifiers of the circadian clock in human cells. Cell 2009 3.27
19 Genome-wide analysis of CREB target genes reveals a core promoter requirement for cAMP responsiveness. Mol Cell 2003 3.23
20 Circadian and CLOCK-controlled regulation of the mouse transcriptome and cell proliferation. Proc Natl Acad Sci U S A 2007 3.06
21 A chemical, genetic, and structural analysis of the nuclear bile acid receptor FXR. Mol Cell 2003 2.85
22 Extensive variation in chromatin states across humans. Science 2013 2.83
23 Feedback repression is required for mammalian circadian clock function. Nat Genet 2006 2.73
24 Network features of the mammalian circadian clock. PLoS Biol 2009 2.59
25 Illumination of the melanopsin signaling pathway. Science 2005 2.58
26 Genome-scale functional profiling of the mammalian AP-1 signaling pathway. Proc Natl Acad Sci U S A 2003 2.45
27 c-Myb and p300 regulate hematopoietic stem cell proliferation and differentiation. Dev Cell 2005 2.30
28 The imprinted gene Magel2 regulates normal circadian output. Nat Genet 2007 2.18
29 Identification of the circadian transcriptome in adult mouse skeletal muscle. Physiol Genomics 2007 2.06
30 Universality and flexibility in gene expression from bacteria to human. Proc Natl Acad Sci U S A 2004 2.03
31 Applications of a rat multiple tissue gene expression data set. Genome Res 2004 2.01
32 Small-molecule inhibitors of microrna miR-21 function. Angew Chem Int Ed Engl 2008 2.00
33 The circadian clock interacts with metabolic physiology to influence reproductive fitness. Cell Metab 2011 1.96
34 Mammalian Per-Arnt-Sim proteins in environmental adaptation. Annu Rev Physiol 2010 1.94
35 CLOCK and BMAL1 regulate MyoD and are necessary for maintenance of skeletal muscle phenotype and function. Proc Natl Acad Sci U S A 2010 1.63
36 Identification of novel mammalian growth regulatory factors by genome-scale quantitative image analysis. Genome Res 2005 1.59
37 Circadian clock proteins regulate neuronal redox homeostasis and neurodegeneration. J Clin Invest 2013 1.57
38 WAVECLOCK: wavelet analysis of circadian oscillation. Bioinformatics 2008 1.52
39 Large-scale profiling of Rab GTPase trafficking networks: the membrome. Mol Biol Cell 2005 1.49
40 CircaDB: a database of mammalian circadian gene expression profiles. Nucleic Acids Res 2012 1.47
41 Bioinformatic analysis of circadian gene oscillation in mouse aorta. Circulation 2005 1.40
42 A coactivator trap identifies NONO (p54nrb) as a component of the cAMP-signaling pathway. Proc Natl Acad Sci U S A 2007 1.34
43 Network dynamics to evaluate performance of an academic institution. Sci Transl Med 2010 1.32
44 IVT-seq reveals extreme bias in RNA sequencing. Genome Biol 2014 1.29
45 The transcription factor encyclopedia. Genome Biol 2012 1.28
46 Night/day changes in pineal expression of >600 genes: central role of adrenergic/cAMP signaling. J Biol Chem 2008 1.27
47 Brain-specific rescue of Clock reveals system-driven transcriptional rhythms in peripheral tissue. PLoS Genet 2012 1.27
48 Categorically distinct acute stressors elicit dissimilar transcriptional profiles in the paraventricular nucleus of the hypothalamus. J Neurosci 2003 1.20
49 The transcriptional repressor STRA13 regulates a subset of peripheral circadian outputs. J Biol Chem 2003 1.19
50 It's all in the timing: many clocks, many outputs. J Biol Rhythms 2004 1.17
51 The role of clock genes in pharmacology. Annu Rev Pharmacol Toxicol 2010 1.08
52 Power-law-like distributions in biomedical publications and research funding. Genome Biol 2007 1.06
53 Design and analysis of large-scale biological rhythm studies: a comparison of algorithms for detecting periodic signals in biological data. Bioinformatics 2013 1.05
54 Analysis and synthesis of high-amplitude Cis-elements in the mammalian circadian clock. Proc Natl Acad Sci U S A 2008 1.02
55 The circadian clock gates the intestinal stem cell regenerative state. Cell Rep 2013 1.02
56 Circadian light input in plants, flies and mammals. Novartis Found Symp 2003 0.99
57 Comparative analysis of human genome assemblies reveals genome-level differences. Genomics 2002 0.99
58 Circadian clocks are seeing the systems biology light. Genome Biol 2005 0.98
59 miR-210 inhibits trophoblast invasion and is a serum biomarker for preeclampsia. Am J Pathol 2013 0.98
60 DNA arrays: applications and implications for circadian biology. J Biol Rhythms 2003 0.97
61 Wnt ligands signal in a cooperative manner to promote foregut organogenesis. Proc Natl Acad Sci U S A 2012 0.94
62 RNA profiling in circadian biology. Methods Enzymol 2005 0.94
63 Adhesion regulates MAP kinase/ternary complex factor exchange to control a proliferative transcriptional switch. Curr Biol 2012 0.93
64 The γ-secretase cleavage product of polycystin-1 regulates TCF and CHOP-mediated transcriptional activation through a p300-dependent mechanism. Dev Cell 2011 0.92
65 Identification and characterization of genes susceptible to transcriptional cross-talk between the hypoxia and dioxin signaling cascades. Chem Res Toxicol 2006 0.91
66 Generation of a novel allelic series of cryptochrome mutants via mutagenesis reveals residues involved in protein-protein interaction and CRY2-specific repression. Mol Cell Biol 2009 0.88
67 Genomics and systems approaches in the mammalian circadian clock. Curr Opin Genet Dev 2010 0.88
68 A functional genomics screen for microRNA regulators of NF-kappaB signaling. BMC Biol 2013 0.86
69 NetAtlas: a Cytoscape plugin to examine signaling networks based on tissue gene expression. In Silico Biol 2008 0.85
70 A functional map of NFkappaB signaling identifies novel modulators and multiple system controls. Genome Biol 2007 0.83
71 An array of insights: application of DNA chip technology in the study of cell biology. Trends Cell Biol 2003 0.82
72 A CRY in the Night. Dev Cell 2011 0.77
73 Clean thoughts about dirty genes. J Biol Rhythms 2004 0.77
74 Exploring trafficking GTPase function by mRNA expression profiling: use of the SymAtlas web-application and the Membrome datasets. Methods Enzymol 2005 0.77
75 High throughput genomic screen identifies multiple factors that promote cooperative Wnt signaling. PLoS One 2013 0.76
76 The network as the target. Wiley Interdiscip Rev Syst Biol Med 2010 0.75
77 Comparative genomics as a tool in the understanding of eukaryotic transcriptional regulation. Curr Opin Genet Dev 2005 0.75
78 Clock Regulation of Metabolites Reveals Coupling between Transcription and Metabolism. Cell Metab 2017 0.75
79 Clock gene wikis available: join the "long tail". J Biol Rhythms 2008 0.75