Published in Mol Phylogenet Evol on June 01, 2003
Resolution of ray-finned fish phylogeny and timing of diversification. Proc Natl Acad Sci U S A (2012) 3.84
The tree of life and a new classification of bony fishes. PLoS Curr (2013) 2.50
Novel relationships among ten fish model species revealed based on a phylogenomic analysis using ESTs. J Mol Evol (2006) 1.91
Fish and chips: various methodologies demonstrate utility of a 16,006-gene salmonid microarray. BMC Genomics (2005) 1.75
Deep-ocean origin of the freshwater eels. Biol Lett (2010) 1.72
A salmonid EST genomic study: genes, duplications, phylogeny and microarrays. BMC Genomics (2008) 1.68
Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. BMC Genomics (2010) 1.30
Framing the Salmonidae family phylogenetic portrait: a more complete picture from increased taxon sampling. PLoS One (2012) 1.21
The covert world of fish biofluorescence: a phylogenetically widespread and phenotypically variable phenomenon. PLoS One (2014) 1.11
PCR-based approach for sequencing mitochondrial genomes of decapod crustaceans, with a practical example from kuruma prawn (Marsupenaeus japonicus). Mar Biotechnol (NY) (2004) 0.98
The fate of the duplicated androgen receptor in fishes: a late neofunctionalization event? BMC Evol Biol (2008) 0.94
Evolution of Hox clusters in Salmonidae: a comparative analysis between Atlantic salmon (Salmo salar) and rainbow trout (Oncorhynchus mykiss). J Mol Evol (2005) 0.94
Mitogenomic sequences and evidence from unique gene rearrangements corroborate evolutionary relationships of myctophiformes (Neoteleostei). BMC Evol Biol (2013) 0.91
Evolution of teleostean hatching enzyme genes and their paralogous genes. Dev Genes Evol (2006) 0.91
Rainbow smelt (Osmerus mordax) genomic library and EST resources. Mar Biotechnol (NY) (2008) 0.87
Integrating multi-origin expression data improves the resolution of deep phylogeny of ray-finned fish (Actinopterygii). Sci Rep (2012) 0.85
An evolutionary perspective on Elovl5 fatty acid elongase: comparison of Northern pike and duplicated paralogs from Atlantic salmon. BMC Evol Biol (2013) 0.85
Seasonal changes in hepatic gene expression reveal modulation of multiple processes in rainbow smelt (Osmerus mordax). Mar Biotechnol (NY) (2010) 0.84
Intron-loss evolution of hatching enzyme genes in Teleostei. BMC Evol Biol (2010) 0.83
Evolution of muscle activity patterns driving motions of the jaw and hyoid during chewing in Gnathostomes. Integr Comp Biol (2011) 0.82
Smelt was the likely beneficiary of an antifreeze gene laterally transferred between fishes. BMC Evol Biol (2012) 0.78
Short-wavelength sensitive opsin (SWS1) as a new marker for vertebrate phylogenetics. BMC Evol Biol (2006) 0.77
Molecular co-evolution of a protease and its substrate elucidated by analysis of the activity of predicted ancestral hatching enzyme. BMC Evol Biol (2013) 0.77
Diversity of Aplochiton fishes (Galaxiidea) and the taxonomic resurrection of A. marinus. PLoS One (2013) 0.76
Refining discordant gene trees. BMC Bioinformatics (2014) 0.76
Dual NRF2 paralogs in Coho salmon and their antioxidant response element targets. Redox Biol (2016) 0.76
Higher-order organisation of extremely amplified, potentially functional and massively methylated 5S rDNA in European pikes (Esox sp.). BMC Genomics (2017) 0.75
Fin modules: an evolutionary perspective on appendage disparity in basal vertebrates. BMC Biol (2017) 0.75
Preservation Obscures Pelagic Deep-Sea Fish Diversity: Doubling the Number of Sole-Bearing Opisthoproctids and Resurrection of the Genus Monacoa (Opisthoproctidae, Argentiniformes). PLoS One (2016) 0.75
Early-branching euteleost relationships: areas of congruence between concatenation and coalescent model inferences. PeerJ (2017) 0.75
Major patterns of higher teleostean phylogenies: a new perspective based on 100 complete mitochondrial DNA sequences. Mol Phylogenet Evol (2003) 2.57
Basal actinopterygian relationships: a mitogenomic perspective on the phylogeny of the "ancient fish". Mol Phylogenet Evol (2003) 2.04
Mitogenomic evaluation of the historical biogeography of cichlids toward reliable dating of teleostean divergences. BMC Evol Biol (2008) 1.90
Deep-ocean origin of the freshwater eels. Biol Lett (2010) 1.72
The mitochondrial genome of spotted green pufferfish Tetraodon nigroviridis (Teleostei: Tetraodontiformes) and divergence time estimation among model organisms in fishes. Genes Genet Syst (2006) 1.70
Molecular phylogeny and evolution of the freshwater eels genus Anguilla based on the whole mitochondrial genome sequences. Mol Phylogenet Evol (2005) 1.61
Evolutionary origin and phylogeny of the modern holocephalans (Chondrichthyes: Chimaeriformes): a mitogenomic perspective. Mol Biol Evol (2010) 1.55
Deep-sea mystery solved: astonishing larval transformations and extreme sexual dimorphism unite three fish families. Biol Lett (2009) 1.45
How meaningful are Bayesian support values? Mol Biol Evol (2003) 1.36
Evolutionary history of Otophysi (Teleostei), a major clade of the modern freshwater fishes: Pangaean origin and Mesozoic radiation. BMC Evol Biol (2011) 1.34
MitoFish and MitoAnnotator: a mitochondrial genome database of fish with an accurate and automatic annotation pipeline. Mol Biol Evol (2013) 1.28
Evolutionary history of anglerfishes (Teleostei: Lophiiformes): a mitogenomic perspective. BMC Evol Biol (2010) 1.26
Evolution of trace amine associated receptor (TAAR) gene family in vertebrates: lineage-specific expansions and degradations of a second class of vertebrate chemosensory receptors expressed in the olfactory epithelium. Mol Biol Evol (2007) 1.24
V-SINEs: a new superfamily of vertebrate SINEs that are widespread in vertebrate genomes and retain a strongly conserved segment within each repetitive unit. Genome Res (2002) 1.22
Using SINEs to probe ancient explosive speciation: "hidden" radiation of African cichlids? Mol Biol Evol (2003) 1.21
Systematics of the subfamily Danioninae (Teleostei: Cypriniformes: Cyprinidae). Mol Phylogenet Evol (2010) 1.20
Mitogenomic evidence for the monophyly of elopomorph fishes (Teleostei) and the evolutionary origin of the leptocephalus larva. Mol Phylogenet Evol (2004) 1.20
Body plan convergence in the evolution of skates and rays (Chondrichthyes: Batoidea). Mol Phylogenet Evol (2011) 1.18
Divergence time of the two regional medaka populations in Japan as a new time scale for comparative genomics of vertebrates. Biol Lett (2009) 1.18
Complete mitochondrial DNA sequence of the Japanese spiny lobster, Panulirus japonicus (Crustacea: Decapoda). Gene (2002) 1.17
Interrelationships of Atherinomorpha (medakas, flyingfishes, killifishes, silversides, and their relatives): The first evidence based on whole mitogenome sequences. Mol Phylogenet Evol (2008) 1.15
Mitochondrial genomics of ostariophysan fishes: perspectives on phylogeny and biogeography. J Mol Evol (2003) 1.13
Phylogenetic relationships of Danio within the order Cypriniformes: a framework for comparative and evolutionary studies of a model species. J Exp Zool B Mol Dev Evol (2007) 1.13
Biogeography and evolution of the Carassius auratus-complex in East Asia. BMC Evol Biol (2010) 1.11
Evolution of the deep-sea gulper eel mitochondrial genomes: large-scale gene rearrangements originated within the eels. Mol Biol Evol (2003) 1.10
Interrelationships of the 11 gasterosteiform families (sticklebacks, pipefishes, and their relatives): a new perspective based on whole mitogenome sequences from 75 higher teleosts. Mol Phylogenet Evol (2007) 1.09
Independent evolution of the specialized pharyngeal jaw apparatus in cichlid and labrid fishes. BMC Evol Biol (2007) 1.09
Reconstructing the phylogenetic relationships of the earth's most diverse clade of freshwater fishes--order Cypriniformes (Actinopterygii: Ostariophysi): a case study using multiple nuclear loci and the mitochondrial genome. Mol Phylogenet Evol (2008) 1.08
Complete mitochondrial DNA sequence of Tigriopus japonicus (Crustacea: Copepoda). Mar Biotechnol (NY) (2002) 1.08
Evolutionary origin of the Scombridae (tunas and mackerels): members of a paleogene adaptive radiation with 14 other pelagic fish families. PLoS One (2013) 1.07
Extensive lineage-specific gene duplication and evolution of the spiggin multi-gene family in stickleback. BMC Evol Biol (2007) 1.01
Temporal pattern of loss/persistence of duplicate genes involved in signal transduction and metabolic pathways after teleost-specific genome duplication. BMC Evol Biol (2009) 1.01
Evolution of feeding specialization in Tanganyikan scale-eating cichlids: a molecular phylogenetic approach. BMC Evol Biol (2007) 1.00
Phylogenetic relationships among anchovies, sardines, herrings and their relatives (Clupeiformes), inferred from whole mitogenome sequences. Mol Phylogenet Evol (2006) 1.00
Phylogenetic relationships and natural hybridization in rabbitfishes (Teleostei: Siganidae) inferred from mitochondrial and nuclear DNA analyses. Mol Phylogenet Evol (2007) 1.00
A 'living fossil' eel (Anguilliformes: Protanguillidae, fam. nov.) from an undersea cave in Palau. Proc Biol Sci (2011) 0.99
Remarkable morphological stasis in an extant vertebrate despite tens of millions of years of divergence. Proc Biol Sci (2010) 0.98
PCR-based approach for sequencing mitochondrial genomes of decapod crustaceans, with a practical example from kuruma prawn (Marsupenaeus japonicus). Mar Biotechnol (NY) (2004) 0.98
Zooplankton diversity analysis through single-gene sequencing of a community sample. BMC Genomics (2009) 0.97
Molecular systematics of the gonorynchiform fishes (Teleostei) based on whole mitogenome sequences: implications for higher-level relationships within the Otocephala. Mol Phylogenet Evol (2005) 0.96
Comparable ages for the independent origins of electrogenesis in African and South American weakly electric fishes. PLoS One (2012) 0.96
Gene rearrangements and evolution of tRNA pseudogenes in the mitochondrial genome of the parrotfish (Teleostei: Perciformes: Scaridae). J Mol Evol (2004) 0.95
Evolution and origin of vomeronasal-type odorant receptor gene repertoire in fishes. BMC Evol Biol (2006) 0.94
Multiple occurrences of spiggin genes in sticklebacks. Gene (2006) 0.94
Monophyly, phylogenetic position and inter-familial relationships of the Alepocephaliformes (Teleostei) based on whole mitogenome sequences. Mol Phylogenet Evol (2007) 0.94
Evolutionary patterns and selective pressures of odorant/pheromone receptor gene families in teleost fishes. PLoS One (2008) 0.92
Efficiently resolving the basal clades of a phylogenetic tree using Bayesian and parsimony approaches: a case study using mitogenomic data from 100 higher teleost fishes. Mol Phylogenet Evol (2004) 0.92
Stickleback phylogenies resolved: evidence from mitochondrial genomes and 11 nuclear genes. Mol Phylogenet Evol (2008) 0.92
Molecular phylogeny of the cyprinid tribe Labeonini (Teleostei: Cypriniformes). Mol Phylogenet Evol (2012) 0.92
Phylogenetic relationships of catostomid fishes (Actinopterygii: Cypriniformes) based on mitochondrial ND4/ND5 gene sequences. Mol Phylogenet Evol (2009) 0.92
Mitochondrial phylogenomics of anchovies (family Engraulidae) and recurrent origins of pronounced miniaturization in the order Clupeiformes. Mol Phylogenet Evol (2009) 0.91
Mitogenomic sequences and evidence from unique gene rearrangements corroborate evolutionary relationships of myctophiformes (Neoteleostei). BMC Evol Biol (2013) 0.91
A new perspective on phylogeny and evolution of tetraodontiform fishes (Pisces: Acanthopterygii) based on whole mitochondrial genome sequences: basal ecological diversification? BMC Evol Biol (2008) 0.91
Mitogenomic evaluation of the unique facial nerve pattern as a phylogenetic marker within the percifom fishes (Teleostei: Percomorpha). Mol Phylogenet Evol (2009) 0.91
Evolution of vomeronasal-type odorant receptor genes in the zebrafish genome. Gene (2005) 0.90
Complete mitochondrial DNA sequence of the swimming crab, Portunus trituberculatus (Crustacea: Decapoda: Brachyura). Gene (2003) 0.89
The historical biogeography of the freshwater knifefishes using mitogenomic approaches: a mesozoic origin of the Asian notopterids (Actinopterygii: Osteoglossomorpha). Mol Phylogenet Evol (2009) 0.89
Evolution of the mitochondrial genome in cephalochordata as inferred from complete nucleotide sequences from two epigonichthys species. J Mol Evol (2005) 0.88
Phylogeny and biogeography of highly diverged freshwater fish species (Leuciscinae, Cyprinidae, Teleostei) inferred from mitochondrial genome analysis. Gene (2012) 0.88
Phylogenetic position of tetraodontiform fishes within the higher teleosts: Bayesian inferences based on 44 whole mitochondrial genome sequences. Mol Phylogenet Evol (2007) 0.87
Explosive speciation of Takifugu: another use of fugu as a model system for evolutionary biology. Mol Biol Evol (2008) 0.87