Published in Gene on April 11, 2005
Genome evolution and meiotic maps by massively parallel DNA sequencing: spotted gar, an outgroup for the teleost genome duplication. Genetics (2011) 2.95
A new time-scale for ray-finned fish evolution. Proc Biol Sci (2007) 2.92
The African coelacanth genome provides insights into tetrapod evolution. Nature (2013) 2.78
First divergence time estimate of spiders, scorpions, mites and ticks (subphylum: Chelicerata) inferred from mitochondrial phylogeny. Exp Appl Acarol (2008) 2.06
Did genome duplication drive the origin of teleosts? A comparative study of diversification in ray-finned fishes. BMC Evol Biol (2009) 2.03
Novel relationships among ten fish model species revealed based on a phylogenomic analysis using ESTs. J Mol Evol (2006) 1.91
Mitogenomic evaluation of the historical biogeography of cichlids toward reliable dating of teleostean divergences. BMC Evol Biol (2008) 1.90
Multi-locus phylogenetic analysis reveals the pattern and tempo of bony fish evolution. PLoS Curr (2013) 1.47
Evolutionary history of Otophysi (Teleostei), a major clade of the modern freshwater fishes: Pangaean origin and Mesozoic radiation. BMC Evol Biol (2011) 1.34
Primitive duplicate Hox clusters in the European eel's genome. PLoS One (2012) 1.21
A Phylogenomic Perspective on the Radiation of Ray-Finned Fishes Based upon Targeted Sequencing of Ultraconserved Elements (UCEs). PLoS One (2013) 1.16
Vertebrate vitellogenin gene duplication in relation to the "3R hypothesis": correlation to the pelagic egg and the oceanic radiation of teleosts. PLoS One (2007) 1.11
Coelacanth genomes reveal signatures for evolutionary transition from water to land. Genome Res (2013) 1.10
Analysis of the transcriptome of the Indonesian coelacanth Latimeria menadoensis. BMC Genomics (2013) 1.02
Temporal pattern of loss/persistence of duplicate genes involved in signal transduction and metabolic pathways after teleost-specific genome duplication. BMC Evol Biol (2009) 1.01
A living fossil in the genome of a living fossil: Harbinger transposons in the coelacanth genome. Mol Biol Evol (2011) 0.97
An independent genome duplication inferred from Hox paralogs in the American paddlefish--a representative basal ray-finned fish and important comparative reference. Genome Biol Evol (2012) 0.90
Phylogenetic informativeness reconciles ray-finned fish molecular divergence times. BMC Evol Biol (2014) 0.87
A comprehensive analysis of teleost MHC class I sequences. BMC Evol Biol (2015) 0.87
Molecular phylogenetics and evolutionary history of ariid catfishes revisited: a comprehensive sampling. BMC Evol Biol (2009) 0.86
Extant primitively segmented spiders have recently diversified from an ancient lineage. Proc Biol Sci (2015) 0.86
Identification and expression analysis of interferon gamma genes in channel catfish. Immunogenetics (2006) 0.86
Genetically distinct coelacanth population off the northern Tanzanian coast. Proc Natl Acad Sci U S A (2011) 0.85
The origin and migration of primordial germ cells in sturgeons. PLoS One (2014) 0.83
Intron-loss evolution of hatching enzyme genes in Teleostei. BMC Evol Biol (2010) 0.83
The mechanism for primordial germ-cell migration is conserved between Japanese eel and zebrafish. PLoS One (2011) 0.81
The vertebrate RCAN gene family: novel insights into evolution, structure and regulation. PLoS One (2014) 0.79
Genomic organisation of the seven ParaHox genes of coelacanths. J Exp Zool B Mol Dev Evol (2013) 0.75
The small non-coding RNA processing machinery of two living fossil species, lungfish and coelacanth, gives new insights into the evolution of the Argonaute protein family. Genome Biol Evol (2017) 0.75
Auto-Adhesion Potential of Extraocular Aqp0 during Teleost Development. PLoS One (2016) 0.75
The coelacanth: Can a "living fossil" have active transposable elements in its genome? Mob Genet Elements (2015) 0.75
Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes. Science (2002) 20.59
Variation in sequence and organization of splicing regulatory elements in vertebrate genes. Proc Natl Acad Sci U S A (2004) 3.34
The African coelacanth genome provides insights into tetrapod evolution. Nature (2013) 2.78
Fugu genome analysis provides evidence for a whole-genome duplication early during the evolution of ray-finned fishes. Mol Biol Evol (2004) 2.65
Major patterns of higher teleostean phylogenies: a new perspective based on 100 complete mitochondrial DNA sequences. Mol Phylogenet Evol (2003) 2.57
Conservation of all three p53 family members and Mdm2 and Mdm4 in the cartilaginous fish. Cell Cycle (2011) 2.25
Basal actinopterygian relationships: a mitogenomic perspective on the phylogeny of the "ancient fish". Mol Phylogenet Evol (2003) 2.04
Mitogenomic evaluation of the historical biogeography of cichlids toward reliable dating of teleostean divergences. BMC Evol Biol (2008) 1.90
Nuclear protein-coding genes support lungfish and not the coelacanth as the closest living relatives of land vertebrates. Proc Natl Acad Sci U S A (2004) 1.81
Deep-ocean origin of the freshwater eels. Biol Lett (2010) 1.72
The mitochondrial genome of spotted green pufferfish Tetraodon nigroviridis (Teleostei: Tetraodontiformes) and divergence time estimation among model organisms in fishes. Genes Genet Syst (2006) 1.70
Molecular phylogeny and evolution of the freshwater eels genus Anguilla based on the whole mitochondrial genome sequences. Mol Phylogenet Evol (2005) 1.61
A trans-species missense SNP in Amhr2 is associated with sex determination in the tiger pufferfish, Takifugu rubripes (fugu). PLoS Genet (2012) 1.58
Rapidly evolving fish genomes and teleost diversity. Curr Opin Genet Dev (2008) 1.57
Evolutionary origin and phylogeny of the modern holocephalans (Chondrichthyes: Chimaeriformes): a mitogenomic perspective. Mol Biol Evol (2010) 1.55
Basal euteleostean relationships: a mitogenomic perspective on the phylogenetic reality of the "Protacanthopterygii". Mol Phylogenet Evol (2003) 1.55
Deep-sea mystery solved: astonishing larval transformations and extreme sexual dimorphism unite three fish families. Biol Lett (2009) 1.45
Evolution of genetic networks underlying the emergence of thymopoiesis in vertebrates. Cell (2009) 1.42
Tissue sampling methods and standards for vertebrate genomics. Gigascience (2012) 1.39
Extensive expansion of the claudin gene family in the teleost fish, Fugu rubripes. Genome Res (2004) 1.38
Evidence for at least six Hox clusters in the Japanese lamprey (Lethenteron japonicum). Proc Natl Acad Sci U S A (2013) 1.36
How meaningful are Bayesian support values? Mol Biol Evol (2003) 1.36
Highly conserved syntenic blocks at the vertebrate Hox loci and conserved regulatory elements within and outside Hox gene clusters. Proc Natl Acad Sci U S A (2006) 1.35
Evolutionary history of Otophysi (Teleostei), a major clade of the modern freshwater fishes: Pangaean origin and Mesozoic radiation. BMC Evol Biol (2011) 1.34
Fugu and human sequence comparison identifies novel human genes and conserved non-coding sequences. Gene (2002) 1.34
Elephant shark (Callorhinchus milii) provides insights into the evolution of Hox gene clusters in gnathostomes. Proc Natl Acad Sci U S A (2009) 1.33
MitoFish and MitoAnnotator: a mitochondrial genome database of fish with an accurate and automatic annotation pipeline. Mol Biol Evol (2013) 1.28
Evolutionary history of anglerfishes (Teleostei: Lophiiformes): a mitogenomic perspective. BMC Evol Biol (2010) 1.26
Evolution of trace amine associated receptor (TAAR) gene family in vertebrates: lineage-specific expansions and degradations of a second class of vertebrate chemosensory receptors expressed in the olfactory epithelium. Mol Biol Evol (2007) 1.24
V-SINEs: a new superfamily of vertebrate SINEs that are widespread in vertebrate genomes and retain a strongly conserved segment within each repetitive unit. Genome Res (2002) 1.22
Using SINEs to probe ancient explosive speciation: "hidden" radiation of African cichlids? Mol Biol Evol (2003) 1.21
Systematics of the subfamily Danioninae (Teleostei: Cypriniformes: Cyprinidae). Mol Phylogenet Evol (2010) 1.20
Duplication, degeneration and subfunctionalization of the nested synapsin-Timp genes in Fugu. Trends Genet (2003) 1.20
Mitogenomic evidence for the monophyly of elopomorph fishes (Teleostei) and the evolutionary origin of the leptocephalus larva. Mol Phylogenet Evol (2004) 1.20
Body plan convergence in the evolution of skates and rays (Chondrichthyes: Batoidea). Mol Phylogenet Evol (2011) 1.18
Divergence time of the two regional medaka populations in Japan as a new time scale for comparative genomics of vertebrates. Biol Lett (2009) 1.18
Ancient vertebrate conserved noncoding elements have been evolving rapidly in teleost fishes. Mol Biol Evol (2010) 1.17
Complete mitochondrial DNA sequence of the Japanese spiny lobster, Panulirus japonicus (Crustacea: Decapoda). Gene (2002) 1.17
TFCONES: a database of vertebrate transcription factor-encoding genes and their associated conserved noncoding elements. BMC Genomics (2007) 1.17
A genetic linkage map for the tiger pufferfish, Takifugu rubripes. Genetics (2005) 1.17
Integration of the genetic map and genome assembly of fugu facilitates insights into distinct features of genome evolution in teleosts and mammals. Genome Biol Evol (2011) 1.16
Interrelationships of Atherinomorpha (medakas, flyingfishes, killifishes, silversides, and their relatives): The first evidence based on whole mitogenome sequences. Mol Phylogenet Evol (2008) 1.15
Mitochondrial genomics of ostariophysan fishes: perspectives on phylogeny and biogeography. J Mol Evol (2003) 1.13
Phylogenetic relationships of Danio within the order Cypriniformes: a framework for comparative and evolutionary studies of a model species. J Exp Zool B Mol Dev Evol (2007) 1.13
Biogeography and evolution of the Carassius auratus-complex in East Asia. BMC Evol Biol (2010) 1.11
Investigation of loss and gain of introns in the compact genomes of pufferfishes (Fugu and Tetraodon). Mol Biol Evol (2007) 1.11
Evolution of the deep-sea gulper eel mitochondrial genomes: large-scale gene rearrangements originated within the eels. Mol Biol Evol (2003) 1.10
Origin and diversity of the SOX transcription factor gene family: genome-wide analysis in Fugu rubripes. Gene (2004) 1.10
Interrelationships of the 11 gasterosteiform families (sticklebacks, pipefishes, and their relatives): a new perspective based on whole mitogenome sequences from 75 higher teleosts. Mol Phylogenet Evol (2007) 1.09
Independent evolution of the specialized pharyngeal jaw apparatus in cichlid and labrid fishes. BMC Evol Biol (2007) 1.09
Reconstructing the phylogenetic relationships of the earth's most diverse clade of freshwater fishes--order Cypriniformes (Actinopterygii: Ostariophysi): a case study using multiple nuclear loci and the mitochondrial genome. Mol Phylogenet Evol (2008) 1.08
A compact cartilaginous fish model genome. Curr Biol (2005) 1.08
Complete mitochondrial DNA sequence of Tigriopus japonicus (Crustacea: Copepoda). Mar Biotechnol (NY) (2002) 1.08
Evolutionary origin of the Scombridae (tunas and mackerels): members of a paleogene adaptive radiation with 14 other pelagic fish families. PLoS One (2013) 1.07
Adaptive evolution of tetrodotoxin resistance in animals. Trends Genet (2006) 1.05
Genetic alterations in the tyrosine kinase transcriptome of human cancer cell lines. Cancer Res (2007) 1.04
Evolution of the neuropeptide Y family: new genes by chromosome duplications in early vertebrates and in teleost fishes. Gen Comp Endocrinol (2007) 1.03
Hox gene clusters in the Indonesian coelacanth, Latimeria menadoensis. Proc Natl Acad Sci U S A (2003) 1.03
Temporal pattern of loss/persistence of duplicate genes involved in signal transduction and metabolic pathways after teleost-specific genome duplication. BMC Evol Biol (2009) 1.01
Extensive lineage-specific gene duplication and evolution of the spiggin multi-gene family in stickleback. BMC Evol Biol (2007) 1.01
Neuropeptide Y-family peptides and receptors in the elephant shark, Callorhinchus milii confirm gene duplications before the gnathostome radiation. Genomics (2008) 1.01
Evolution of feeding specialization in Tanganyikan scale-eating cichlids: a molecular phylogenetic approach. BMC Evol Biol (2007) 1.00
Phylogenetic relationships among anchovies, sardines, herrings and their relatives (Clupeiformes), inferred from whole mitogenome sequences. Mol Phylogenet Evol (2006) 1.00
Phylogenetic relationships and natural hybridization in rabbitfishes (Teleostei: Siganidae) inferred from mitochondrial and nuclear DNA analyses. Mol Phylogenet Evol (2007) 1.00
Elephant shark sequence reveals unique insights into the evolutionary history of vertebrate genes: A comparative analysis of the protocadherin cluster. Proc Natl Acad Sci U S A (2008) 0.99
A 'living fossil' eel (Anguilliformes: Protanguillidae, fam. nov.) from an undersea cave in Palau. Proc Biol Sci (2011) 0.99
Sequencing of Pax6 loci from the elephant shark reveals a family of Pax6 genes in vertebrate genomes, forged by ancient duplications and divergences. PLoS Genet (2013) 0.99
Large number of ultraconserved elements were already present in the jawed vertebrate ancestor. Mol Biol Evol (2008) 0.98
Remarkable morphological stasis in an extant vertebrate despite tens of millions of years of divergence. Proc Biol Sci (2010) 0.98
PCR-based approach for sequencing mitochondrial genomes of decapod crustaceans, with a practical example from kuruma prawn (Marsupenaeus japonicus). Mar Biotechnol (NY) (2004) 0.98
Zooplankton diversity analysis through single-gene sequencing of a community sample. BMC Genomics (2009) 0.97
Early vertebrate chromosome duplications and the evolution of the neuropeptide Y receptor gene regions. BMC Evol Biol (2008) 0.97
STAT4 is a target of the hematopoietic zinc-finger transcription factor Ikaros in T cells. FEBS Lett (2005) 0.97
Molecular systematics of the gonorynchiform fishes (Teleostei) based on whole mitogenome sequences: implications for higher-level relationships within the Otocephala. Mol Phylogenet Evol (2005) 0.96