Published in BMC Evol Biol on July 23, 2008
The tree of life and a new classification of bony fishes. PLoS Curr (2013) 2.50
Did genome duplication drive the origin of teleosts? A comparative study of diversification in ray-finned fishes. BMC Evol Biol (2009) 2.03
Explosive morphological diversification of spiny-finned teleost fishes in the aftermath of the end-Cretaceous extinction. Proc Biol Sci (2010) 1.98
Lake Tanganyika--a 'melting pot' of ancient and young cichlid lineages (Teleostei: Cichlidae)? PLoS One (2015) 1.48
Multi-locus phylogenetic analysis reveals the pattern and tempo of bony fish evolution. PLoS Curr (2013) 1.47
Bentho-pelagic divergence of cichlid feeding architecture was prodigious and consistent during multiple adaptive radiations within African rift-lakes. PLoS One (2010) 1.40
Evolutionary history of Otophysi (Teleostei), a major clade of the modern freshwater fishes: Pangaean origin and Mesozoic radiation. BMC Evol Biol (2011) 1.34
Evolutionary history of anglerfishes (Teleostei: Lophiiformes): a mitogenomic perspective. BMC Evol Biol (2010) 1.26
Molecular and fossil evidence place the origin of cichlid fishes long after Gondwanan rifting. Proc Biol Sci (2013) 1.25
Divergence time of the two regional medaka populations in Japan as a new time scale for comparative genomics of vertebrates. Biol Lett (2009) 1.18
Vertebrate time-tree elucidates the biogeographic pattern of a major biotic change around the K-T boundary in Madagascar. Proc Natl Acad Sci U S A (2012) 1.16
The root of the East African cichlid radiations. BMC Evol Biol (2009) 1.10
Evolutionary origin of the Scombridae (tunas and mackerels): members of a paleogene adaptive radiation with 14 other pelagic fish families. PLoS One (2013) 1.07
Bayesian tests of topology hypotheses with an example from diving beetles. Syst Biol (2013) 1.05
Temporal pattern of loss/persistence of duplicate genes involved in signal transduction and metabolic pathways after teleost-specific genome duplication. BMC Evol Biol (2009) 1.01
Imperfect isolation: factors and filters shaping Madagascar's extant vertebrate fauna. PLoS One (2013) 0.99
A 'living fossil' eel (Anguilliformes: Protanguillidae, fam. nov.) from an undersea cave in Palau. Proc Biol Sci (2011) 0.99
Comparative physical maps derived from BAC end sequences of tilapia (Oreochromis niloticus). BMC Genomics (2010) 0.97
Genomic organization and gene expression of the multiple globins in Atlantic cod: conservation of globin-flanking genes in chordates infers the origin of the vertebrate globin clusters. BMC Evol Biol (2010) 0.94
A hybrid genetic linkage map of two ecologically and morphologically divergent Midas cichlid fishes (Amphilophus spp.) obtained by massively parallel DNA sequencing (ddRADSeq). G3 (Bethesda) (2013) 0.93
The monogenean parasite fauna of cichlids: a potential tool for host biogeography. Int J Evol Biol (2011) 0.93
Horizontal transfers of Tc1 elements between teleost fishes and their vertebrate parasites, lampreys. Genome Biol Evol (2012) 0.90
Rapid genome reshaping by multiple-gene loss after whole-genome duplication in teleost fish suggested by mathematical modeling. Proc Natl Acad Sci U S A (2015) 0.90
Evolutionary history and functional characterization of androgen receptor genes in jawed vertebrates. Endocrinology (2009) 0.89
Ancestral and derived attributes of the dlx gene repertoire, cluster structure and expression patterns in an African cichlid fish. Evodevo (2011) 0.88
Phylogenetic informativeness reconciles ray-finned fish molecular divergence times. BMC Evol Biol (2014) 0.87
A comprehensive analysis of teleost MHC class I sequences. BMC Evol Biol (2015) 0.87
Molecular phylogenetics and evolutionary history of ariid catfishes revisited: a comprehensive sampling. BMC Evol Biol (2009) 0.86
Integrating multi-origin expression data improves the resolution of deep phylogeny of ray-finned fish (Actinopterygii). Sci Rep (2012) 0.85
Time and origin of cichlid colonization of the lower Congo rapids. PLoS One (2011) 0.85
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Multiple invasions into freshwater by pufferfishes (teleostei: tetraodontidae): a mitogenomic perspective. PLoS One (2011) 0.84
Temporal patterns of diversification across global cichlid biodiversity (Acanthomorpha: Cichlidae). PLoS One (2013) 0.83
Lineage-specific expansion of vomeronasal type 2 receptor-like (OlfC) genes in cichlids may contribute to diversification of amino acid detection systems. Genome Biol Evol (2013) 0.82
An evaluation of the role of sensory drive in the evolution of lake Malawi cichlid fishes. Int J Evol Biol (2012) 0.81
Mitogenomic evidence for an Indo-West Pacific origin of the Clupeoidei (Teleostei: Clupeiformes). PLoS One (2013) 0.80
Smelt was the likely beneficiary of an antifreeze gene laterally transferred between fishes. BMC Evol Biol (2012) 0.78
Evolution of Type II Antifreeze Protein Genes in Teleost Fish: A Complex Scenario Involving Lateral Gene Transfers and Episodic Directional Selection. Evol Bioinform Online (2012) 0.77
Allelic variation in Malawi cichlid opsins: a tale of two genera. J Mol Evol (2010) 0.76
A mitogenomic perspective on the phylogenetic position of the Hapalogenys genus (Acanthopterygii: Perciformes) and the evolutionary origin of Perciformes. PLoS One (2014) 0.75
Evolutionary Fate of the Androgen Receptor-Signaling Pathway in Ray-Finned Fishes with a Special Focus on Cichlids. G3 (Bethesda) (2015) 0.75
The double odyssey of Madagascan polystome flatworms leads to new insights on the origins of their amphibian hosts. Proc Biol Sci (2009) 0.75
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Paleontological evidence to date the tree of life. Mol Biol Evol (2006) 6.46
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Partitioned Bayesian analyses, partition choice, and the phylogenetic relationships of scincid lizards. Syst Biol (2005) 3.14
A new time-scale for ray-finned fish evolution. Proc Biol Sci (2007) 2.92
Dating the tree of life. Science (2003) 2.76
Jaws and teeth of the earliest bony fishes. Nature (2007) 2.67
Major patterns of higher teleostean phylogenies: a new perspective based on 100 complete mitochondrial DNA sequences. Mol Phylogenet Evol (2003) 2.57
Age of cichlids: new dates for ancient lake fish radiations. Mol Biol Evol (2007) 2.50
Basal actinopterygian relationships: a mitogenomic perspective on the phylogeny of the "ancient fish". Mol Phylogenet Evol (2003) 2.04
Novel relationships among ten fish model species revealed based on a phylogenomic analysis using ESTs. J Mol Evol (2006) 1.91
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The mitochondrial genome of spotted green pufferfish Tetraodon nigroviridis (Teleostei: Tetraodontiformes) and divergence time estimation among model organisms in fishes. Genes Genet Syst (2006) 1.70
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Phylogeny and biogeography of the Malagasy and Australasian rainbowfishes (Teleostei: Melanotaenioidei): Gondwanan vicariance and evolution in freshwater. Mol Phylogenet Evol (2004) 1.14
Independent evolution of the specialized pharyngeal jaw apparatus in cichlid and labrid fishes. BMC Evol Biol (2007) 1.09
Basal jawed vertebrate phylogeny inferred from multiple nuclear DNA-coded genes. BMC Biol (2004) 1.08
Reconciling the origins of Africa, India and Madagascar with vertebrate dispersal scenarios. Folia Primatol (Basel) (2006) 1.06
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Freshwater fishes, dispersal ability, and nonevidence: "gondwana life rafts" to the rescue. Syst Biol (2005) 0.98
Molecular phylogeny of osteoglossoids: a new model for Gondwanian origin and plate tectonic transportation of the Asian arowana. Mol Biol Evol (2000) 0.98
Major patterns of higher teleostean phylogenies: a new perspective based on 100 complete mitochondrial DNA sequences. Mol Phylogenet Evol (2003) 2.57
Basal actinopterygian relationships: a mitogenomic perspective on the phylogeny of the "ancient fish". Mol Phylogenet Evol (2003) 2.04
Deep-ocean origin of the freshwater eels. Biol Lett (2010) 1.72
The mitochondrial genome of spotted green pufferfish Tetraodon nigroviridis (Teleostei: Tetraodontiformes) and divergence time estimation among model organisms in fishes. Genes Genet Syst (2006) 1.70
Sister group relationship of turtles to the bird-crocodilian clade revealed by nuclear DNA-coded proteins. Mol Biol Evol (2004) 1.66
Molecular phylogeny and evolution of the freshwater eels genus Anguilla based on the whole mitochondrial genome sequences. Mol Phylogenet Evol (2005) 1.61
Evolutionary origin and phylogeny of the modern holocephalans (Chondrichthyes: Chimaeriformes): a mitogenomic perspective. Mol Biol Evol (2010) 1.55
Basal euteleostean relationships: a mitogenomic perspective on the phylogenetic reality of the "Protacanthopterygii". Mol Phylogenet Evol (2003) 1.55
Deep-sea mystery solved: astonishing larval transformations and extreme sexual dimorphism unite three fish families. Biol Lett (2009) 1.45
How meaningful are Bayesian support values? Mol Biol Evol (2003) 1.36
Evolutionary history of Otophysi (Teleostei), a major clade of the modern freshwater fishes: Pangaean origin and Mesozoic radiation. BMC Evol Biol (2011) 1.34
MitoFish and MitoAnnotator: a mitochondrial genome database of fish with an accurate and automatic annotation pipeline. Mol Biol Evol (2013) 1.28
Evolutionary history of anglerfishes (Teleostei: Lophiiformes): a mitogenomic perspective. BMC Evol Biol (2010) 1.26
Evolution of trace amine associated receptor (TAAR) gene family in vertebrates: lineage-specific expansions and degradations of a second class of vertebrate chemosensory receptors expressed in the olfactory epithelium. Mol Biol Evol (2007) 1.24
V-SINEs: a new superfamily of vertebrate SINEs that are widespread in vertebrate genomes and retain a strongly conserved segment within each repetitive unit. Genome Res (2002) 1.22
Using SINEs to probe ancient explosive speciation: "hidden" radiation of African cichlids? Mol Biol Evol (2003) 1.21
Systematics of the subfamily Danioninae (Teleostei: Cypriniformes: Cyprinidae). Mol Phylogenet Evol (2010) 1.20
Mitogenomic evidence for the monophyly of elopomorph fishes (Teleostei) and the evolutionary origin of the leptocephalus larva. Mol Phylogenet Evol (2004) 1.20
Body plan convergence in the evolution of skates and rays (Chondrichthyes: Batoidea). Mol Phylogenet Evol (2011) 1.18
Divergence time of the two regional medaka populations in Japan as a new time scale for comparative genomics of vertebrates. Biol Lett (2009) 1.18
Complete mitochondrial DNA sequence of the Japanese spiny lobster, Panulirus japonicus (Crustacea: Decapoda). Gene (2002) 1.17
Interrelationships of Atherinomorpha (medakas, flyingfishes, killifishes, silversides, and their relatives): The first evidence based on whole mitogenome sequences. Mol Phylogenet Evol (2008) 1.15
Mitochondrial genomics of ostariophysan fishes: perspectives on phylogeny and biogeography. J Mol Evol (2003) 1.13
Phylogenetic relationships of Danio within the order Cypriniformes: a framework for comparative and evolutionary studies of a model species. J Exp Zool B Mol Dev Evol (2007) 1.13
Biogeography and evolution of the Carassius auratus-complex in East Asia. BMC Evol Biol (2010) 1.11
Evolution of the deep-sea gulper eel mitochondrial genomes: large-scale gene rearrangements originated within the eels. Mol Biol Evol (2003) 1.10
Interrelationships of the 11 gasterosteiform families (sticklebacks, pipefishes, and their relatives): a new perspective based on whole mitogenome sequences from 75 higher teleosts. Mol Phylogenet Evol (2007) 1.09
Mitochondrial genomes of acrodont lizards: timing of gene rearrangements and phylogenetic and biogeographic implications. BMC Evol Biol (2010) 1.09
Independent evolution of the specialized pharyngeal jaw apparatus in cichlid and labrid fishes. BMC Evol Biol (2007) 1.09
Reconstructing the phylogenetic relationships of the earth's most diverse clade of freshwater fishes--order Cypriniformes (Actinopterygii: Ostariophysi): a case study using multiple nuclear loci and the mitochondrial genome. Mol Phylogenet Evol (2008) 1.08
Complete mitochondrial DNA sequence of Tigriopus japonicus (Crustacea: Copepoda). Mar Biotechnol (NY) (2002) 1.08
Evolutionary origin of the Scombridae (tunas and mackerels): members of a paleogene adaptive radiation with 14 other pelagic fish families. PLoS One (2013) 1.07
Extensive lineage-specific gene duplication and evolution of the spiggin multi-gene family in stickleback. BMC Evol Biol (2007) 1.01
Temporal pattern of loss/persistence of duplicate genes involved in signal transduction and metabolic pathways after teleost-specific genome duplication. BMC Evol Biol (2009) 1.01
Evolution of feeding specialization in Tanganyikan scale-eating cichlids: a molecular phylogenetic approach. BMC Evol Biol (2007) 1.00
Phylogenetic relationships among anchovies, sardines, herrings and their relatives (Clupeiformes), inferred from whole mitogenome sequences. Mol Phylogenet Evol (2006) 1.00
Phylogenetic relationships and natural hybridization in rabbitfishes (Teleostei: Siganidae) inferred from mitochondrial and nuclear DNA analyses. Mol Phylogenet Evol (2007) 1.00
The mitochondrial genome of the lizard Calotes versicolor and a novel gene inversion in South Asian draconine agamids. Mol Biol Evol (2007) 0.99
A 'living fossil' eel (Anguilliformes: Protanguillidae, fam. nov.) from an undersea cave in Palau. Proc Biol Sci (2011) 0.99
Remarkable morphological stasis in an extant vertebrate despite tens of millions of years of divergence. Proc Biol Sci (2010) 0.98
PCR-based approach for sequencing mitochondrial genomes of decapod crustaceans, with a practical example from kuruma prawn (Marsupenaeus japonicus). Mar Biotechnol (NY) (2004) 0.98
Zooplankton diversity analysis through single-gene sequencing of a community sample. BMC Genomics (2009) 0.97
Complete mitochondrial DNA sequences of six snakes: phylogenetic relationships and molecular evolution of genomic features. J Mol Evol (2005) 0.96
Molecular systematics of the gonorynchiform fishes (Teleostei) based on whole mitogenome sequences: implications for higher-level relationships within the Otocephala. Mol Phylogenet Evol (2005) 0.96
Comparable ages for the independent origins of electrogenesis in African and South American weakly electric fishes. PLoS One (2012) 0.96
Gene rearrangements and evolution of tRNA pseudogenes in the mitochondrial genome of the parrotfish (Teleostei: Perciformes: Scaridae). J Mol Evol (2004) 0.95
Evolution and origin of vomeronasal-type odorant receptor gene repertoire in fishes. BMC Evol Biol (2006) 0.94
Multiple occurrences of spiggin genes in sticklebacks. Gene (2006) 0.94
Monophyly, phylogenetic position and inter-familial relationships of the Alepocephaliformes (Teleostei) based on whole mitogenome sequences. Mol Phylogenet Evol (2007) 0.94
Mitochondrial genome of Pogona vitticepes (Reptilia; Agamidae): control region duplication and the origin of Australasian agamids. Gene (2005) 0.92
Molecular phylogeny of the cyprinid tribe Labeonini (Teleostei: Cypriniformes). Mol Phylogenet Evol (2012) 0.92
Stickleback phylogenies resolved: evidence from mitochondrial genomes and 11 nuclear genes. Mol Phylogenet Evol (2008) 0.92
Efficiently resolving the basal clades of a phylogenetic tree using Bayesian and parsimony approaches: a case study using mitogenomic data from 100 higher teleost fishes. Mol Phylogenet Evol (2004) 0.92
Evolutionary patterns and selective pressures of odorant/pheromone receptor gene families in teleost fishes. PLoS One (2008) 0.92
Phylogenetic relationships of catostomid fishes (Actinopterygii: Cypriniformes) based on mitochondrial ND4/ND5 gene sequences. Mol Phylogenet Evol (2009) 0.92
Mitochondrial phylogenomics of anchovies (family Engraulidae) and recurrent origins of pronounced miniaturization in the order Clupeiformes. Mol Phylogenet Evol (2009) 0.91
Non-AUG translation initiation of mRNA encoding plastid-targeted phage-type RNA polymerase in Nicotiana sylvestris. Biochem Biophys Res Commun (2002) 0.91
Mitogenomic sequences and evidence from unique gene rearrangements corroborate evolutionary relationships of myctophiformes (Neoteleostei). BMC Evol Biol (2013) 0.91
A new perspective on phylogeny and evolution of tetraodontiform fishes (Pisces: Acanthopterygii) based on whole mitochondrial genome sequences: basal ecological diversification? BMC Evol Biol (2008) 0.91
Mitogenomic evaluation of the unique facial nerve pattern as a phylogenetic marker within the percifom fishes (Teleostei: Percomorpha). Mol Phylogenet Evol (2009) 0.91