PubRank

Dennis H Bamford

Author PubWeight™ 139.43‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 Does common architecture reveal a viral lineage spanning all three domains of life? Mol Cell 2004 2.52
2 Cellular RNA-dependent RNA polymerase involved in posttranscriptional gene silencing has two distinct activity modes. Mol Cell 2002 2.47
3 Insights into assembly from structural analysis of bacteriophage PRD1. Nature 2004 2.47
4 Virus evolution: how far does the double beta-barrel viral lineage extend? Nat Rev Microbiol 2008 2.11
5 qiRNA is a new type of small interfering RNA induced by DNA damage. Nature 2009 2.06
6 The structure of an RNAi polymerase links RNA silencing and transcription. PLoS Biol 2006 1.96
7 Atomic snapshots of an RNA packaging motor reveal conformational changes linking ATP hydrolysis to RNA translocation. Cell 2004 1.86
8 Genomics of bacterial and archaeal viruses: dynamics within the prokaryotic virosphere. Microbiol Mol Biol Rev 2011 1.78
9 Mechanism of membranous tunnelling nanotube formation in viral genome delivery. PLoS Biol 2013 1.58
10 Structure unifies the viral universe. Annu Rev Biochem 2012 1.58
11 Structure of the bacteriophage phi6 nucleocapsid suggests a mechanism for sequential RNA packaging. Structure 2006 1.56
12 Initiation of viral RNA-dependent RNA polymerization. J Gen Virol 2004 1.54
13 Membrane structure and interactions with protein and DNA in bacteriophage PRD1. Nature 2004 1.53
14 The receptor binding protein P2 of PRD1, a virus targeting antibiotic-resistant bacteria, has a novel fold suggesting multiple functions. Structure 2003 1.52
15 Insights into virus evolution and membrane biogenesis from the structure of the marine lipid-containing bacteriophage PM2. Mol Cell 2008 1.37
16 Order to the viral universe. J Virol 2010 1.30
17 Minor proteins, mobile arms and membrane-capsid interactions in the bacteriophage PRD1 capsid. Nat Struct Biol 2002 1.27
18 Structure and host-cell interaction of SH1, a membrane-containing, halophilic euryarchaeal virus. Proc Natl Acad Sci U S A 2008 1.25
19 The structural basis for RNA specificity and Ca2+ inhibition of an RNA-dependent RNA polymerase. Structure 2004 1.25
20 Geminiviruses: a tale of a plasmid becoming a virus. BMC Evol Biol 2009 1.23
21 Double-stranded DNA viruses: 20 families and only five different architectural principles for virion assembly. Curr Opin Virol 2011 1.20
22 An ssDNA virus infecting archaea: a new lineage of viruses with a membrane envelope. Mol Microbiol 2009 1.20
23 Sequential model of phage PRD1 DNA delivery: active involvement of the viral membrane. Mol Microbiol 2002 1.19
24 Global network of specific virus-host interactions in hypersaline environments. Environ Microbiol 2011 1.18
25 Comparative analysis of bacterial viruses Bam35, infecting a gram-positive host, and PRD1, infecting gram-negative hosts, demonstrates a viral lineage. Virology 2003 1.17
26 The tailless icosahedral membrane virus PRD1 localizes the proteins involved in genome packaging and injection at a unique vertex. J Virol 2003 1.17
27 The Bacillus thuringiensis linear double-stranded DNA phage Bam35, which is highly similar to the Bacillus cereus linear plasmid pBClin15, has a prophage state. J Bacteriol 2003 1.15
28 SH1: A novel, spherical halovirus isolated from an Australian hypersaline lake. Virology 2005 1.15
29 Common principles in viral entry. Annu Rev Microbiol 2002 1.14
30 Global changes in cellular gene expression during bacteriophage PRD1 infection. J Virol 2006 1.13
31 In vitro DNA packaging of PRD1: a common mechanism for internal-membrane viruses. J Mol Biol 2005 1.13
32 The PM2 virion has a novel organization with an internal membrane and pentameric receptor binding spikes. Nat Struct Mol Biol 2004 1.12
33 Comparative analysis of the mosaic genomes of tailed archaeal viruses and proviruses suggests common themes for virion architecture and assembly with tailed viruses of bacteria. J Mol Biol 2010 1.12
34 Conservation of major and minor jelly-roll capsid proteins in Polinton (Maverick) transposons suggests that they are bona fide viruses. Biol Direct 2014 1.10
35 RNA packaging device of double-stranded RNA bacteriophages, possibly as simple as hexamer of P4 protein. J Biol Chem 2003 1.10
36 Archaeal proviruses TKV4 and MVV extend the PRD1-adenovirus lineage to the phylum Euryarchaeota. Virology 2008 1.09
37 The DNA/RNA-dependent RNA polymerase QDE-1 generates aberrant RNA and dsRNA for RNAi in a process requiring replication protein A and a DNA helicase. PLoS Biol 2010 1.09
38 Conserved intermediates on the assembly pathway of double-stranded RNA bacteriophages. J Mol Biol 2003 1.07
39 The closest relatives of icosahedral viruses of thermophilic bacteria are among viruses and plasmids of the halophilic archaea. J Virol 2009 1.07
40 The evolutionary history of archaeal MCM helicases: a case study of vertical evolution combined with hitchhiking of mobile genetic elements. Mol Biol Evol 2010 1.07
41 Virus-host interactions in environments with a wide range of ionic strengths. Environ Microbiol Rep 2009 1.07
42 The X-ray crystal structure of P3, the major coat protein of the lipid-containing bacteriophage PRD1, at 1.65 A resolution. Acta Crystallogr D Biol Crystallogr 2001 1.06
43 Structure of the archaeal head-tailed virus HSTV-1 completes the HK97 fold story. Proc Natl Acad Sci U S A 2013 1.05
44 Nonspecific nucleoside triphosphatase P4 of double-stranded RNA bacteriophage phi6 is required for single-stranded RNA packaging and transcription. J Virol 2002 1.04
45 Bacteriophage phi 6 RNA-dependent RNA polymerase: molecular details of initiating nucleic acid synthesis without primer. J Biol Chem 2002 1.04
46 New, closely related haloarchaeal viral elements with different nucleic Acid types. J Virol 2010 1.03
47 Structural explanation for the role of Mn2+ in the activity of phi6 RNA-dependent RNA polymerase. Nucleic Acids Res 2008 1.02
48 Large-scale production of dsRNA and siRNA pools for RNA interference utilizing bacteriophage phi6 RNA-dependent RNA polymerase. RNA 2007 1.01
49 Identification and mutational analysis of bacteriophage PRD1 holin protein P35. J Bacteriol 2003 1.00
50 The unique vertex of bacterial virus PRD1 is connected to the viral internal membrane. J Virol 2003 1.00
51 Putative prophages related to lytic tailless marine dsDNA phage PM2 are widespread in the genomes of aquatic bacteria. BMC Genomics 2007 1.00
52 Diffraction quality crystals of PRD1, a 66-MDa dsDNA virus with an internal membrane. J Struct Biol 2002 1.00
53 Unification of the globally distributed spindle-shaped viruses of the Archaea. J Virol 2013 0.99
54 A snapshot of viral evolution from genome analysis of the tectiviridae family. J Mol Biol 2005 0.99
55 Evolutionary potential of an RNA virus. J Virol 2004 0.98
56 The structure of the bacteriophage PRD1 spike sheds light on the evolution of viral capsid architecture. Mol Cell 2005 0.98
57 Noncatalytic ions direct the RNA-dependent RNA polymerase of bacterial double-stranded RNA virus ϕ6 from de novo initiation to elongation. J Virol 2011 0.98
58 Bacteriophage PM2 has a protein capsid surrounding a spherical proteinaceous lipid core. J Virol 2002 0.98
59 Structural basis of mechanochemical coupling in a hexameric molecular motor. J Biol Chem 2007 0.98
60 Identification and functional analysis of the Rz/Rz1-like accessory lysis genes in the membrane-containing bacteriophage PRD1. Mol Microbiol 2008 0.97
61 Back-priming mode of phi6 RNA-dependent RNA polymerase. J Gen Virol 2005 0.97
62 The origin of phospholipids of the enveloped bacteriophage phi6. Virology 2004 0.97
63 Temperature requirements for initiation of RNA-dependent RNA polymerization. Virology 2003 0.96
64 Innate immune responses in human monocyte-derived dendritic cells are highly dependent on the size and the 5' phosphorylation of RNA molecules. J Immunol 2011 0.96
65 Virion architecture unifies globally distributed pleolipoviruses infecting halophilic archaea. J Virol 2012 0.96
66 The lytic enzyme of bacteriophage PRD1 is associated with the viral membrane. J Bacteriol 2002 0.96
67 Enzymatic mechanism of RNA translocation in double-stranded RNA bacteriophages. J Biol Chem 2003 0.95
68 Closely related archaeal Haloarcula hispanica icosahedral viruses HHIV-2 and SH1 have nonhomologous genes encoding host recognition functions. J Virol 2012 0.95
69 Does the evolution of viral polymerases reflect the origin and evolution of viruses? Nat Rev Microbiol 2009 0.94
70 Probing, by self-assembly, the number of potential binding sites for minor protein subunits in the procapsid of double-stranded RNA bacteriophage Φ6. J Virol 2012 0.94
71 Quantitative dissociation of archaeal virus SH1 reveals distinct capsid proteins and a lipid core. Virology 2006 0.93
72 Plate tectonics of virus shell assembly and reorganization in phage φ8, a distant relative of mammalian reoviruses. Structure 2013 0.93
73 The Holin protein of bacteriophage PRD1 forms a pore for small-molecule and endolysin translocation. J Bacteriol 2005 0.92
74 Phospholipid molecular species profiles of tectiviruses infecting Gram-negative and Gram-positive hosts. Virology 2004 0.92
75 Roles of the minor capsid protein P7 in the assembly and replication of double-stranded RNA bacteriophage phi6. J Mol Biol 2008 0.92
76 Temperate membrane-containing halophilic archaeal virus SNJ1 has a circular dsDNA genome identical to that of plasmid pHH205. Virology 2012 0.91
77 Nontemplated terminal nucleotidyltransferase activity of double-stranded RNA bacteriophage phi6 RNA-dependent RNA polymerase. J Virol 2008 0.90
78 The N-terminus of the RNA polymerase from infectious pancreatic necrosis virus is the determinant of genome attachment. PLoS Pathog 2011 0.90
79 Modified coat protein forms the flexible spindle-shaped virion of haloarchaeal virus His1. Environ Microbiol 2012 0.90
80 Gene silencing pathway RNA-dependent RNA polymerase of Neurospora crassa: yeast expression and crystallization of selenomethionated QDE-1 protein. J Struct Biol 2005 0.89
81 Packaging motor from double-stranded RNA bacteriophage phi12 acts as an obligatory passive conduit during transcription. Nucleic Acids Res 2004 0.89
82 Efficient DNA packaging of bacteriophage PRD1 requires the unique vertex protein P6. J Virol 2007 0.89
83 Snapshot of virus evolution in hypersaline environments from the characterization of a membrane-containing Salisaeta icosahedral phage 1. Proc Natl Acad Sci U S A 2012 0.89
84 Insights into the pre-initiation events of bacteriophage phi 6 RNA-dependent RNA polymerase: towards the assembly of a productive binary complex. Nucleic Acids Res 2009 0.89
85 Assembly of double-stranded RNA bacteriophages. Adv Virus Res 2005 0.89
86 Assembly of large icosahedral double-stranded RNA viruses. Adv Exp Med Biol 2012 0.88
87 Complete genome sequence of the broad host range single-stranded RNA phage PRR1 places it in the Levivirus genus with characteristics shared with Alloleviviruses. J Virol 2006 0.88
88 Production, crystallization and preliminary X-ray crystallographic studies of the bacteriophage phi 12 packaging motor. Acta Crystallogr D Biol Crystallogr 2004 0.88
89 Penetration of membrane-containing double-stranded-DNA bacteriophage PM2 into Pseudoalteromonas hosts. J Bacteriol 2004 0.87
90 Snapshot of haloarchaeal tailed virus genomes. RNA Biol 2013 0.87
91 Purified membrane-containing procapsids of bacteriophage PRD1 package the viral genome. J Mol Biol 2009 0.87
92 Global transcriptional responses of Pseudomonas aeruginosa to phage PRR1 infection. J Virol 2007 0.87
93 The linear double-stranded DNA of phage Bam35 enters lysogenic host cells, but the late phage functions are suppressed. J Bacteriol 2005 0.87
94 Probing the ability of the coat and vertex protein of the membrane-containing bacteriophage PRD1 to display a meningococcal epitope. Virology 2003 0.87
95 Insights into head-tailed viruses infecting extremely halophilic archaea. J Virol 2013 0.86
96 Reinitiated viral RNA-dependent RNA polymerase resumes replication at a reduced rate. Nucleic Acids Res 2008 0.86
97 Lipids of archaeal viruses. Archaea 2012 0.86
98 Two distinct mechanisms ensure transcriptional polarity in double-stranded RNA bacteriophages. J Virol 2003 0.86
99 The use of low-resolution phasing followed by phase extension from 7.6 to 2.5 Å resolution with noncrystallographic symmetry to solve the structure of a bacteriophage capsid protein. Acta Crystallogr D Biol Crystallogr 2011 0.86
100 A novel lysis system in PM2, a lipid-containing marine double-stranded DNA bacteriophage. Mol Microbiol 2007 0.85
101 The single-stranded DNA genome of novel archaeal virus halorubrum pleomorphic virus 1 is enclosed in the envelope decorated with glycoprotein spikes. J Virol 2009 0.85
102 Tracking in atomic detail the functional specializations in viral RecA helicases that occur during evolution. Nucleic Acids Res 2013 0.84
103 Bacteria, phages and septicemia. PLoS One 2007 0.84
104 Transbilayer distribution of phospholipids in bacteriophage membranes. Biochim Biophys Acta 2007 0.84
105 Genome characterization of lipid-containing marine bacteriophage PM2 by transposon insertion mutagenesis. J Virol 2006 0.84
106 Diversity in prokaryotic glycosylation: an archaeal-derived N-linked glycan contains legionaminic acid. Mol Microbiol 2012 0.84
107 Monolithic ion exchange chromatographic methods for virus purification. Virology 2012 0.83
108 The small viral membrane-associated protein P32 is involved in bacteriophage PRD1 DNA entry. J Virol 2002 0.82
109 Holin of bacteriophage lambda: structural insights into a membrane lesion. Mol Microbiol 2008 0.82
110 Penetration of enveloped double-stranded RNA bacteriophages phi13 and phi6 into Pseudomonas syringae cells. J Virol 2005 0.82
111 The C-terminal priming domain is strongly associated with the main body of bacteriophage ϕ6 RNA-dependent RNA polymerase. Virology 2012 0.82
112 Integral membrane protein P16 of bacteriophage PRD1 stabilizes the adsorption vertex structure. J Virol 2004 0.81
113 Order and disorder in crystals of hexameric NTPases from dsRNA bacteriophages. Acta Crystallogr D Biol Crystallogr 2003 0.81
114 Structure of a VP1-VP3 complex suggests how birnaviruses package the VP1 polymerase. J Virol 2013 0.81
115 On-line monitoring of changes in host cell physiology during the one-step growth cycle of Bacillus phage Bam35. J Microbiol Methods 2007 0.80
116 Assessment of the activity of RND-type multidrug efflux pumps in Pseudomonas aeruginosa using tetraphenylphosphonium ions. Int J Antimicrob Agents 2010 0.80
117 Characterization of subunit-specific interactions in a double-stranded RNA virus: Raman difference spectroscopy of the phi6 procapsid. Biochemistry 2002 0.80
118 Calcium ion-dependent entry of the membrane-containing bacteriophage PM2 into its Pseudoalteromonas host. Virology 2010 0.80
119 The entry mechanism of membrane-containing phage Bam35 infecting Bacillus thuringiensis. J Bacteriol 2006 0.80
120 High-throughput purification of double-stranded RNA molecules using convective interaction media monolithic anion exchange columns. J Chromatogr A 2012 0.80
121 Phospholipids act as secondary receptor during the entry of the enveloped, double-stranded RNA bacteriophage phi6. J Gen Virol 2010 0.80
122 Preliminary crystallographic analysis of the major capsid protein P2 of the lipid-containing bacteriophage PM2. Acta Crystallogr Sect F Struct Biol Cryst Commun 2005 0.80
123 Rescue of maturation off-pathway products in the assembly of Pseudomonas phage φ 6. J Virol 2013 0.79
124 Transcription of bacteriophage PM2 involves phage-encoded regulators of heterologous origin. J Bacteriol 2003 0.79
125 Enzymatically produced pools of canonical and Dicer-substrate siRNA molecules display comparable gene silencing and antiviral activities against herpes simplex virus. PLoS One 2012 0.78
126 Selenomethionine labeling of large biological macromolecular complexes: probing the structure of marine bacterial virus PM2. J Struct Biol 2007 0.78
127 In vitro activities of the multifunctional RNA silencing polymerase QDE-1 of Neurospora crassa. J Biol Chem 2010 0.78
128 Overcoming the false-minima problem in direct methods: structure determination of the packaging enzyme P4 from bacteriophage phi13. Acta Crystallogr D Biol Crystallogr 2005 0.77
129 Crystallization and preliminary X-ray diffraction analysis of bacteriophage varphi12 packaging factor P7. Acta Crystallogr D Biol Crystallogr 2004 0.77
130 Efficient double-stranded RNA production methods for utilization in plant virus control. Methods Mol Biol 2015 0.76
131 Inhibition of coxsackievirus B3 and related enteroviruses by antiviral short interfering RNA pools produced using phi6 RNA-dependent RNA polymerase. J Gen Virol 2009 0.76
132 Virology. Revealing virus-host interplay. Science 2011 0.76
133 Polymyxin B induces lysis of marine pseudoalteromonads. Antimicrob Agents Chemother 2007 0.75
134 Bacteriophage ϕ6 nucleocapsid surface protein 8 interacts with virus-specific membrane vesicles containing major envelope protein 9. J Virol 2012 0.75
135 Optical tweezers reveal force plateau and internal friction in PEG-induced DNA condensation. Eur Biophys J 2014 0.75
136 Protein A33 responsible for antibody-resistant spread of Vaccinia virus is homologous to C-type lectin-like proteins. Virus Res 2010 0.75
137 Clinical isolates of Pseudomonas aeruginosa from superficial skin infections have different physiological patterns. FEMS Microbiol Lett 2013 0.75