Published in Environ Microbiol on June 01, 2003
Metagenomics: application of genomics to uncultured microorganisms. Microbiol Mol Biol Rev (2004) 10.67
Identifying the dominant soil bacterial taxa in libraries of 16S rRNA and 16S rRNA genes. Appl Environ Microbiol (2006) 6.67
Chthoniobacter flavus gen. nov., sp. nov., the first pure-culture representative of subdivision two, Spartobacteria classis nov., of the phylum Verrucomicrobia. Appl Environ Microbiol (2004) 3.81
Dormancy contributes to the maintenance of microbial diversity. Proc Natl Acad Sci U S A (2010) 3.33
New strategies for cultivation and detection of previously uncultured microbes. Appl Environ Microbiol (2004) 2.90
Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils. Appl Environ Microbiol (2009) 2.75
The under-recognized dominance of Verrucomicrobia in soil bacterial communities. Soil Biol Biochem (2011) 2.42
Isolation and characterization of soil bacteria that define Terriglobus gen. nov., in the phylum Acidobacteria. Appl Environ Microbiol (2007) 2.41
Combined niche and neutral effects in a microbial wastewater treatment community. Proc Natl Acad Sci U S A (2010) 2.20
Environmental and anthropogenic controls over bacterial communities in wetland soils. Proc Natl Acad Sci U S A (2008) 2.19
Environmental and gut bacteroidetes: the food connection. Front Microbiol (2011) 2.01
Detection and cultivation of soil verrucomicrobia. Appl Environ Microbiol (2005) 1.84
Methane oxidation at 55 degrees C and pH 2 by a thermoacidophilic bacterium belonging to the Verrucomicrobia phylum. Proc Natl Acad Sci U S A (2008) 1.74
Fecal bacterial diversity in a wild gorilla. Appl Environ Microbiol (2006) 1.70
Bacterial community structure and diversity in a century-old manure-treated agroecosystem. Appl Environ Microbiol (2004) 1.58
Multivariate analyses of Burkholderia species in soil: effect of crop and land use history. Appl Environ Microbiol (2004) 1.54
Temporal variability in soil microbial communities across land-use types. ISME J (2013) 1.42
Land use and climatic factors structure regional patterns in soil microbial communities. Glob Ecol Biogeogr (2010) 1.35
Links between plant and rhizoplane bacterial communities in grassland soils, characterized using molecular techniques. Appl Environ Microbiol (2005) 1.29
Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens. Appl Environ Microbiol (2004) 1.22
Identification of bacteria in biofilm and bulk water samples from a nonchlorinated model drinking water distribution system: detection of a large nitrite-oxidizing population associated with Nitrospira spp. Appl Environ Microbiol (2005) 1.19
Potential of a 16S rRNA-based taxonomic microarray for analyzing the rhizosphere effects of maize on Agrobacterium spp. and bacterial communities. Appl Environ Microbiol (2006) 1.17
Influence of soil characteristics on the diversity of bacteria in the Southern Brazilian Atlantic Forest. Appl Environ Microbiol (2010) 1.16
Rice to vegetables: short- versus long-term impact of land-use change on the indigenous soil microbial community. Microb Ecol (2011) 1.12
Effect of agricultural management regime on Burkholderia community structure in soil. Microb Ecol (2006) 1.12
Global distribution and diversity of marine Verrucomicrobia. ISME J (2012) 1.11
Bacterial community composition in Brazilian Anthrosols and adjacent soils characterized using culturing and molecular identification. Microb Ecol (2009) 1.10
Artificial polyploidy improves bacterial single cell genome recovery. PLoS One (2012) 1.10
Microdroplet-enabled highly parallel co-cultivation of microbial communities. PLoS One (2011) 1.07
Agricultural management and labile carbon additions affect soil microbial community structure and interact with carbon and nitrogen cycling. Microb Ecol (2013) 1.05
Impact of plant functional group, plant species, and sampling time on the composition of nirK-type denitrifier communities in soil. Appl Environ Microbiol (2007) 1.05
The community and phylogenetic diversity of biological soil crusts in the Colorado Plateau studied by molecular fingerprinting and intensive cultivation. Microb Ecol (2006) 1.04
Diversity of Planctomycetes in soil in relation to soil history and environmental heterogeneity. Appl Environ Microbiol (2006) 1.03
Comparison of bacterial communities in New England Sphagnum bogs using terminal restriction fragment length polymorphism (T-RFLP). Microb Ecol (2006) 0.91
Soil microbial diversity in the vicinity of a Negev Desert shrub--Reaumuria negevensis. Microb Ecol (2010) 0.88
Soil bacterial and fungal community structure across a range of unimproved and semi-improved upland grasslands. Microb Ecol (2005) 0.84
Distinctive bacterial communities in the rhizoplane of four tropical tree species. Microb Ecol (2012) 0.84
Assessment of bacterial bph gene in Amazonian dark earth and their adjacent soils. PLoS One (2014) 0.83
Soil Microbiome Is More Heterogeneous in Organic Than in Conventional Farming System. Front Microbiol (2017) 0.83
Soil microbial diversity in the vicinity of desert shrubs. Microb Ecol (2012) 0.82
Temporal changes in soil bacterial and archaeal communities with different fertilizers in tea orchards. J Zhejiang Univ Sci B (2014) 0.81
Bacterial communities in Malagasy soils with differing levels of disturbance affecting botanical diversity. PLoS One (2014) 0.81
Seasonal fluctuations of bacterial community diversity in agricultural soil and experimental validation by laboratory disturbance experiments. Microb Ecol (2007) 0.78
Verrucomicrobial community structure and abundance as indicators for changes in chemical factors linked to soil fertility. Antonie Van Leeuwenhoek (2015) 0.77
Unearthing the Ecology of Soil Microorganisms Using a High Resolution DNA-SIP Approach to Explore Cellulose and Xylose Metabolism in Soil. Front Microbiol (2016) 0.77
Responses of Soil Fungal Populations and Communities to the Thinning of Cryptomeria Japonica Forests. Microbes Environ (2016) 0.76
Direct assessment of viral diversity in soils by random PCR amplification of polymorphic DNA. Appl Environ Microbiol (2013) 0.76
Root-associated fungi of Vaccinium carlesii in subtropical forests of China: intra- and inter-annual variability and impacts of human disturbances. Sci Rep (2016) 0.75
Environmental and Geographical Factors Structure Soil Microbial Diversity in New Caledonian Ultramafic Substrates: A Metagenomic Approach. PLoS One (2016) 0.75
Nanoparticles Based on Chitosan as Carriers for the Combined Herbicides Imazapic and Imazapyr. Sci Rep (2016) 0.75
Microbial community responses to soil tillage and crop rotation in a corn/soybean agroecosystem. Ecol Evol (2016) 0.75
Agricultural land-use change in a Mexican oligotrophic desert depletes ecosystem stability. PeerJ (2016) 0.75
Contrasting bacterial communities in two indigenous Chionochloa (Poaceae) grassland soils in New Zealand. PLoS One (2017) 0.75
Assembly of Active Bacterial and Fungal Communities Along a Natural Environmental Gradient. Microb Ecol (2015) 0.75
Systematic artifacts in metagenomes from complex microbial communities. ISME J (2009) 8.18
Reproducible community dynamics of the gastrointestinal microbiota following antibiotic perturbation. Infect Immun (2009) 7.48
Decreased diversity of the fecal Microbiome in recurrent Clostridium difficile-associated diarrhea. J Infect Dis (2008) 6.21
Antibiotic-associated diarrhea accompanied by large-scale alterations in the composition of the fecal microbiota. J Clin Microbiol (2004) 4.46
Comparison of the respiratory microbiome in healthy nonsmokers and smokers. Am J Respir Crit Care Med (2013) 3.65
rrnDB: documenting the number of rRNA and tRNA genes in bacteria and archaea. Nucleic Acids Res (2008) 3.37
New strategies for cultivation and detection of previously uncultured microbes. Appl Environ Microbiol (2004) 2.90
Fundamentals of microbial community resistance and resilience. Front Microbiol (2012) 2.53
Isolation and characterization of soil bacteria that define Terriglobus gen. nov., in the phylum Acidobacteria. Appl Environ Microbiol (2007) 2.41
Colonization of the cecal mucosa by Helicobacter hepaticus impacts the diversity of the indigenous microbiota. Infect Immun (2005) 1.67
Life history implications of rRNA gene copy number in Escherichia coli. Appl Environ Microbiol (2004) 1.59
Analysis of the upper respiratory tract microbiotas as the source of the lung and gastric microbiotas in healthy individuals. MBio (2015) 1.56
Perennial grasslands enhance biodiversity and multiple ecosystem services in bioenergy landscapes. Proc Natl Acad Sci U S A (2014) 1.53
Identifying and removing artificial replicates from 454 pyrosequencing data. Cold Spring Harb Protoc (2010) 1.41
Performance of the translational apparatus varies with the ecological strategies of bacteria. J Bacteriol (2007) 1.41
Rates and consequences of recombination between rRNA operons. J Bacteriol (2003) 1.36
Evidence for a bacterial mechanism for group-specific social odors among hyenas. Sci Rep (2012) 1.30
Symbiotic bacteria appear to mediate hyena social odors. Proc Natl Acad Sci U S A (2013) 1.22
Shallow breathing: bacterial life at low O(2). Nat Rev Microbiol (2013) 1.21
Influence of plant polymers on the distribution and cultivation of bacteria in the phylum Acidobacteria. Appl Environ Microbiol (2010) 1.21
A gene-targeted approach to investigate the intestinal butyrate-producing bacterial community. Microbiome (2013) 1.17
Agriculture's impact on microbial diversity and associated fluxes of carbon dioxide and methane. ISME J (2011) 1.16
Overview of the gastrointestinal microbiota. Adv Exp Med Biol (2008) 0.98
Genomic and physiological characterization of the Verrucomicrobia isolate Diplosphaera colitermitum gen. nov., sp. nov., reveals microaerophily and nitrogen fixation genes. Appl Environ Microbiol (2011) 0.98
Functional gene differences in soil microbial communities from conventional, low-input, and organic farmlands. Appl Environ Microbiol (2012) 0.96
Multiphasic analysis of the temporal development of the distal gut microbiota in patients following ileal pouch anal anastomosis. Microbiome (2013) 0.96
Studying the Enteric Microbiome in Inflammatory Bowel Diseases: Getting through the Growing Pains and Moving Forward. Front Microbiol (2011) 0.96
Differences in codon bias cannot explain differences in translational power among microbes. BMC Bioinformatics (2005) 0.86
Phylogenetic characterization and prevalence of "Spirobacillus cienkowskii," a red-pigmented, spiral-shaped bacterial pathogen of freshwater Daphnia species. Appl Environ Microbiol (2008) 0.85
Development of an ecophysiological model for Diplosphaera colotermitum TAV2, a termite hindgut Verrucomicrobium. ISME J (2013) 0.85
Role of Rhodobacter sp. strain PS9, a purple non-sulfur photosynthetic bacterium isolated from an anaerobic swine waste lagoon, in odor remediation. Appl Environ Microbiol (2003) 0.79
The human microbiome and infectious diseases: beyond koch. Interdiscip Perspect Infect Dis (2009) 0.77
The effect of natural selection on the performance of maximum parsimony. BMC Evol Biol (2007) 0.77
A systems approach to model natural variation in reactive properties of bacterial ribosomes. BMC Syst Biol (2008) 0.75