Published in Interdiscip Perspect Infect Dis on March 29, 2009
Arsenic exposure perturbs the gut microbiome and its metabolic profile in mice: an integrated metagenomics and metabolomics analysis. Environ Health Perspect (2014) 1.41
Systematic artifacts in metagenomes from complex microbial communities. ISME J (2009) 8.18
Reproducible community dynamics of the gastrointestinal microbiota following antibiotic perturbation. Infect Immun (2009) 7.48
Decreased diversity of the fecal Microbiome in recurrent Clostridium difficile-associated diarrhea. J Infect Dis (2008) 6.21
Antibiotic-associated diarrhea accompanied by large-scale alterations in the composition of the fecal microbiota. J Clin Microbiol (2004) 4.46
Comparison of the respiratory microbiome in healthy nonsmokers and smokers. Am J Respir Crit Care Med (2013) 3.65
rrnDB: documenting the number of rRNA and tRNA genes in bacteria and archaea. Nucleic Acids Res (2008) 3.37
New strategies for cultivation and detection of previously uncultured microbes. Appl Environ Microbiol (2004) 2.90
Fundamentals of microbial community resistance and resilience. Front Microbiol (2012) 2.53
Isolation and characterization of soil bacteria that define Terriglobus gen. nov., in the phylum Acidobacteria. Appl Environ Microbiol (2007) 2.41
Diversity and dynamics of microbial communities in soils from agro-ecosystems. Environ Microbiol (2003) 2.34
Identification of catabolite repression as a physiological regulator of biofilm formation by Bacillus subtilis by use of DNA microarrays. J Bacteriol (2003) 2.21
Identification of AbrB-regulated genes involved in biofilm formation by Bacillus subtilis. Mol Microbiol (2004) 2.09
Incorporating genomics and bioinformatics across the life sciences curriculum. PLoS Biol (2010) 1.89
Colonization of the cecal mucosa by Helicobacter hepaticus impacts the diversity of the indigenous microbiota. Infect Immun (2005) 1.67
Host-microbial symbiosis in the vertebrate gastrointestinal tract and the Lactobacillus reuteri paradigm. Proc Natl Acad Sci U S A (2010) 1.59
Life history implications of rRNA gene copy number in Escherichia coli. Appl Environ Microbiol (2004) 1.59
Analysis of the upper respiratory tract microbiotas as the source of the lung and gastric microbiotas in healthy individuals. MBio (2015) 1.56
Perennial grasslands enhance biodiversity and multiple ecosystem services in bioenergy landscapes. Proc Natl Acad Sci U S A (2014) 1.53
Histamine derived from probiotic Lactobacillus reuteri suppresses TNF via modulation of PKA and ERK signaling. PLoS One (2012) 1.50
The essential GTPase RbgA (YlqF) is required for 50S ribosome assembly in Bacillus subtilis. Mol Microbiol (2006) 1.47
Identifying and removing artificial replicates from 454 pyrosequencing data. Cold Spring Harb Protoc (2010) 1.41
Multiple GTPases participate in the assembly of the large ribosomal subunit in Bacillus subtilis. J Bacteriol (2006) 1.41
Performance of the translational apparatus varies with the ecological strategies of bacteria. J Bacteriol (2007) 1.41
Rates and consequences of recombination between rRNA operons. J Bacteriol (2003) 1.36
Evidence for a bacterial mechanism for group-specific social odors among hyenas. Sci Rep (2012) 1.30
Genomic and genetic characterization of the bile stress response of probiotic Lactobacillus reuteri ATCC 55730. Appl Environ Microbiol (2008) 1.23
Symbiotic bacteria appear to mediate hyena social odors. Proc Natl Acad Sci U S A (2013) 1.22
Shallow breathing: bacterial life at low O(2). Nat Rev Microbiol (2013) 1.21
The essential GTPase YqeH is required for proper ribosome assembly in Bacillus subtilis. J Bacteriol (2007) 1.21
High efficiency recombineering in lactic acid bacteria. Nucleic Acids Res (2012) 1.21
Influence of plant polymers on the distribution and cultivation of bacteria in the phylum Acidobacteria. Appl Environ Microbiol (2010) 1.21
A gene-targeted approach to investigate the intestinal butyrate-producing bacterial community. Microbiome (2013) 1.17
Agriculture's impact on microbial diversity and associated fluxes of carbon dioxide and methane. ISME J (2011) 1.16
The early response to acid shock in Lactobacillus reuteri involves the ClpL chaperone and a putative cell wall-altering esterase. Appl Environ Microbiol (2007) 1.15
Structural maintenance of chromosomes protein of Bacillus subtilis affects supercoiling in vivo. J Bacteriol (2002) 1.14
The lactococcal phages Tuc2009 and TP901-1 incorporate two alternate forms of their tail fiber into their virions for infection specialization. J Biol Chem (2013) 1.11
The antimicrobial compound reuterin (3-hydroxypropionaldehyde) induces oxidative stress via interaction with thiol groups. Microbiology (2010) 1.05
Probiotic use decreases intestinal inflammation and increases bone density in healthy male but not female mice. J Cell Physiol (2013) 1.04
Exploring optimization parameters to increase ssDNA recombineering in Lactococcus lactis and Lactobacillus reuteri. Bioengineered (2012) 1.01
Overview of the gastrointestinal microbiota. Adv Exp Med Biol (2008) 0.98
Genomic and physiological characterization of the Verrucomicrobia isolate Diplosphaera colitermitum gen. nov., sp. nov., reveals microaerophily and nitrogen fixation genes. Appl Environ Microbiol (2011) 0.98
Functional gene differences in soil microbial communities from conventional, low-input, and organic farmlands. Appl Environ Microbiol (2012) 0.96
Multiphasic analysis of the temporal development of the distal gut microbiota in patients following ileal pouch anal anastomosis. Microbiome (2013) 0.96
Studying the Enteric Microbiome in Inflammatory Bowel Diseases: Getting through the Growing Pains and Moving Forward. Front Microbiol (2011) 0.96
Biochemical characterization of ribosome assembly GTPase RbgA in Bacillus subtilis. J Biol Chem (2012) 0.95
Functional domains of the 50S subunit mature late in the assembly process. Nucleic Acids Res (2013) 0.94
Probiotic Lactobacillus reuteri ameliorates disease due to enterohemorrhagic Escherichia coli in germfree mice. Infect Immun (2010) 0.93
Global transcriptional response of Lactobacillus reuteri to the sourdough environment. Syst Appl Microbiol (2008) 0.91
Flux analysis of the Lactobacillus reuteri propanediol-utilization pathway for production of 3-hydroxypropionaldehyde, 3-hydroxypropionic acid and 1,3-propanediol from glycerol. Microb Cell Fact (2014) 0.89
Interactions of an essential Bacillus subtilis GTPase, YsxC, with ribosomes. J Bacteriol (2007) 0.88
Cyclopropane fatty acid synthase mutants of probiotic human-derived Lactobacillus reuteri are defective in TNF inhibition. Gut Microbes (2011) 0.87
Differences in codon bias cannot explain differences in translational power among microbes. BMC Bioinformatics (2005) 0.86
Phylogenetic characterization and prevalence of "Spirobacillus cienkowskii," a red-pigmented, spiral-shaped bacterial pathogen of freshwater Daphnia species. Appl Environ Microbiol (2008) 0.85
Development of an ecophysiological model for Diplosphaera colotermitum TAV2, a termite hindgut Verrucomicrobium. ISME J (2013) 0.85
Evaluation of reuterin production in urogenital probiotic Lactobacillus reuteri RC-14. Appl Environ Microbiol (2008) 0.85
Gene dosage-dependent negative regulatory role of β-arrestin-2 in polymicrobial infection-induced inflammation. Infect Immun (2013) 0.84
Role of Lactobacillus reuteri cell and mucus-binding protein A (CmbA) in adhesion to intestinal epithelial cells and mucus in vitro. Microbiology (2014) 0.84
Precision genome engineering in lactic acid bacteria. Microb Cell Fact (2014) 0.83
Mutational analysis of the ribosome assembly GTPase RbgA provides insight into ribosome interaction and ribosome-stimulated GTPase activation. Nucleic Acids Res (2013) 0.82
Glycerol supplementation enhances L. reuteri's protective effect against S. Typhimurium colonization in a 3-D model of colonic epithelium. PLoS One (2012) 0.81
Role of Rhodobacter sp. strain PS9, a purple non-sulfur photosynthetic bacterium isolated from an anaerobic swine waste lagoon, in odor remediation. Appl Environ Microbiol (2003) 0.79
The effect of natural selection on the performance of maximum parsimony. BMC Evol Biol (2007) 0.77
A systems approach to model natural variation in reactive properties of bacterial ribosomes. BMC Syst Biol (2008) 0.75
A practical synthesis of 5-lipoxygenase inhibitor MK-0633. J Org Chem (2010) 0.75