NMR study of parallel-stranded tetraplex formation by the hexadeoxynucleotide d(TG4T).

PubWeight™: 1.65‹?› | Rank: Top 3%

🔗 View Article (PMID 1436110)

Published in Nature on November 19, 1992

Authors

F Aboul-ela1, A I Murchie, D M Lilley

Author Affiliations

1: Department of Biochemistry, University, Dundee, UK.

Articles citing this

Quadruplex DNA: sequence, topology and structure. Nucleic Acids Res (2006) 6.42

G-quadruplex formation within the promoter of the KRAS proto-oncogene and its effect on transcription. Nucleic Acids Res (2006) 3.09

Biophysical and biological properties of quadruplex oligodeoxyribonucleotides. Nucleic Acids Res (2003) 2.34

The yeast telomere-binding protein RAP1 binds to and promotes the formation of DNA quadruplexes in telomeric DNA. EMBO J (1994) 2.01

Combinatorially selected guanosine-quartet structure is a potent inhibitor of human immunodeficiency virus envelope-mediated cell fusion. Proc Natl Acad Sci U S A (1994) 1.94

Promotion of parallel DNA quadruplexes by a yeast telomere binding protein: a circular dichroism study. Proc Natl Acad Sci U S A (1994) 1.83

Kinetics of tetramolecular quadruplexes. Nucleic Acids Res (2005) 1.80

DNA duplex-quadruplex exchange as the basis for a nanomolecular machine. Proc Natl Acad Sci U S A (2003) 1.79

Guanine tetraplex topology of human telomere DNA is governed by the number of (TTAGGG) repeats. Nucleic Acids Res (2005) 1.63

Unusual DNA structure of the diabetes susceptibility locus IDDM2 and its effect on transcription by the insulin promoter factor Pur-1/MAZ. Proc Natl Acad Sci U S A (2000) 1.59

d(G3T4G3) forms an asymmetric diagonally looped dimeric quadruplex with guanosine 5'-syn-syn-anti and 5'-syn-anti-anti N-glycosidic conformations. Proc Natl Acad Sci U S A (1994) 1.27

Ethidium derivatives bind to G-quartets, inhibit telomerase and act as fluorescent probes for quadruplexes. Nucleic Acids Res (2001) 1.22

Structures of the potassium-saturated, 2:1, and intermediate, 1:1, forms of a quadruplex DNA. Nucleic Acids Res (2000) 1.20

Tetraplex folding of telomere sequences and the inclusion of adenine bases. EMBO J (1994) 1.01

The formation pathway of tetramolecular G-quadruplexes. Nucleic Acids Res (2007) 1.00

Chiral metallo-supramolecular complexes selectively recognize human telomeric G-quadruplex DNA. Nucleic Acids Res (2008) 0.98

Kinetic stability of intermolecular DNA quadruplexes. Biophys J (2005) 0.95

NMR solution structure of a parallel LNA quadruplex. Nucleic Acids Res (2004) 0.93

Developmentally excised DNA sequences in Euplotes crassus capable of forming G quartets. Proc Natl Acad Sci U S A (1995) 0.93

Structural properties of the [d(G3T4G3)]2 quadruplex: evidence for sequential syn-syn deoxyguanosines. Nucleic Acids Res (1994) 0.93

Sp1 binds to the precise locus of end processing within the terminal repeats of Epstein-Barr virus DNA. J Virol (1997) 0.89

Parallel-stranded duplex DNA containing blocks of trans purine-purine and purine-pyrimidine base pairs. Nucleic Acids Res (1994) 0.88

Guanine tetraplex formation by short DNA fragments containing runs of guanine and cytosine. Biophys J (1997) 0.87

NMR solution structures of LNA (locked nucleic acid) modified quadruplexes. Nucleic Acids Res (2006) 0.86

A dual-site simultaneous binding mode in the interaction between parallel-stranded G-quadruplex [d(TGGGGT)]4 and cyanine dye 2,2'-diethyl-9-methyl-selenacarbocyanine bromide. Nucleic Acids Res (2012) 0.86

Synthesis of unimolecularly circular G-quadruplexes as prospective molecular probes. Nucleic Acids Res (2004) 0.82

Conformational polymorphism in G-tetraplex structures: strand reversal by base flipover or sugar flipover. Nucleic Acids Res (1993) 0.81

Chain folding and A:T pairing in human telomeric DNA: a model-building and molecular dynamics study. Biophys J (1995) 0.80

Analysis of guanine oxidation products in double-stranded DNA and proposed guanine oxidation pathways in single-stranded, double-stranded or quadruplex DNA. Biomolecules (2014) 0.79

Functional binding of hexanucleotides to 3C protease of hepatitis A virus. Nucleic Acids Res (2011) 0.77

An investigation of the dynamics of spermine bound to duplex and quadruplex DNA by (13)C NMR spectroscopy. Eur Biophys J (2007) 0.76

Proline might have been the first amino acid in the primitive genetic code. J Mol Evol (2014) 0.76

Synthesis and structural characterization of stable branched DNA g-quadruplexes using the trebler phosphoramidite. ChemistryOpen (2012) 0.75

Articles by these authors

The inverted repeat as a recognizable structural feature in supercoiled DNA molecules. Proc Natl Acad Sci U S A (1980) 6.83

The structure of the Holliday junction, and its resolution. Cell (1988) 4.00

Fluorescence energy transfer shows that the four-way DNA junction is a right-handed cross of antiparallel molecules. Nature (1989) 2.99

Generation of superhelical torsion by ATP-dependent chromatin remodeling activities. Cell (2000) 2.95

Fluorescence resonance energy transfer analysis of the structure of the four-way DNA junction. Biochemistry (1992) 2.92

Observing the helical geometry of double-stranded DNA in solution by fluorescence resonance energy transfer. Proc Natl Acad Sci U S A (1993) 2.89

The high-resolution crystal structure of a parallel-stranded guanine tetraplex. Science (1994) 2.64

Roles of topoisomerases in maintaining steady-state DNA supercoiling in Escherichia coli. J Biol Chem (2000) 2.58

Human MutSalpha recognizes damaged DNA base pairs containing O6-methylguanine, O4-methylthymine, or the cisplatin-d(GpG) adduct. Proc Natl Acad Sci U S A (1996) 2.57

Cruciform-resolvase interactions in supercoiled DNA. Cell (1984) 2.43

In vivo consequences of plasmid topology. Nature (1981) 2.37

The crystal structure of a parallel-stranded guanine tetraplex at 0.95 A resolution. J Mol Biol (1997) 2.25

Location of cyanine-3 on double-stranded DNA: importance for fluorescence resonance energy transfer studies. Biochemistry (2000) 2.24

The DNA binding site of HMG1 protein is composed of two similar segments (HMG boxes), both of which have counterparts in other eukaryotic regulatory proteins. EMBO J (1992) 2.18

Hairpin-loop formation by inverted repeats in supercoiled DNA is a local and transmissible property. Nucleic Acids Res (1981) 2.16

Facile cruciform formation by an (A-T)34 sequence from a Xenopus globin gene. J Mol Biol (1985) 2.15

The contrasting structures of mismatched DNA sequences containing looped-out bases (bulges) and multiple mismatches (bubbles). Nucleic Acids Res (1989) 2.07

RNA bulges and the helical periodicity of double-stranded RNA. Nature (1990) 2.01

DNA--protein interactions. HMG has DNA wrapped up. Nature (1992) 2.01

The supercoil-stabilised cruciform of ColE1 is hyper-reactive to osmium tetroxide. EMBO J (1984) 2.00

The role of metal ions in the conformation of the four-way DNA junction. EMBO J (1990) 1.95

The genetic control of DNA supercoiling in Salmonella typhimurium. EMBO J (1984) 1.83

Kinking of DNA and RNA helices by bulged nucleotides observed by fluorescence resonance energy transfer. Proc Natl Acad Sci U S A (1994) 1.81

Folding of the hairpin ribozyme in its natural conformation achieves close physical proximity of the loops. Mol Cell (1998) 1.76

DNA bending induced by cruciform formation. Nature (1985) 1.74

Importance of specific nucleotides in the folding of the natural form of the hairpin ribozyme. Biochemistry (2001) 1.63

Highly selective chemical modification of cruciform loops by diethyl pyrocarbonate. Nucleic Acids Res (1986) 1.61

Ion-induced folding of the hammerhead ribozyme: a fluorescence resonance energy transfer study. EMBO J (1997) 1.57

The stereochemistry of a four-way DNA junction: a theoretical study. Nucleic Acids Res (1990) 1.52

Superhelical torsion in cellular DNA responds directly to environmental and genetic factors. Proc Natl Acad Sci U S A (1990) 1.51

The anomalous gel migration of a stable cruciform: temperature and salt dependence, and some comparisons with curved DNA. Nucleic Acids Res (1987) 1.51

(A-T)n tracts embedded in random sequence DNA--formation of a structure which is chemically reactive and torsionally deformable. Nucleic Acids Res (1986) 1.50

The structure of the chromatin core particle in solution. Nucleic Acids Res (1977) 1.49

The structure-selectivity and sequence-preference of the junction-resolving enzyme CCE1 of Saccharomyces cerevisiae. J Mol Biol (1996) 1.49

Influence of cation size and charge on the extrusion of a salt-dependent cruciform. J Mol Biol (1987) 1.49

Model for the interaction of DNA junctions and resolving enzymes. J Mol Biol (1991) 1.47

Recognition and manipulation of branched DNA structure by junction-resolving enzymes. J Mol Biol (1997) 1.47

The solution structure of the four-way DNA junction at low-salt conditions: a fluorescence resonance energy transfer analysis. Biophys J (1994) 1.47

Structural perturbation in supercoiled DNA: hypersensitivity to modification by a single-strand-selective chemical reagent conferred by inverted repeat sequences. Nucleic Acids Res (1983) 1.41

HMG box proteins bind to four-way DNA junctions in their open conformation. EMBO J (1998) 1.38

Ionic interactions and the global conformations of the hammerhead ribozyme. Nat Struct Biol (1995) 1.36

Single base mismatches in DNA. Long- and short-range structure probed by analysis of axis trajectory and local chemical reactivity. J Mol Biol (1989) 1.35

Retinoblastoma susceptibility genes contain 5' sequences with a high propensity to form guanine-tetrad structures. Nucleic Acids Res (1992) 1.35

A dominant influence of flanking sequences on a local structural transition in DNA. Cell (1986) 1.33

Crystal structure of the Holliday junction resolving enzyme T7 endonuclease I. Nat Struct Biol (2001) 1.33

The interaction of RNA polymerase II from wheat with supercoiled and linear plasmid templates. Nucleic Acids Res (1979) 1.30

Structure, folding and activity of the VS ribozyme: importance of the 2-3-6 helical junction. EMBO J (2001) 1.30

The kinetic properties of cruciform extrusion are determined by DNA base-sequence. Nucleic Acids Res (1985) 1.29

The A730 loop is an important component of the active site of the VS ribozyme. J Mol Biol (2001) 1.29

The three-way DNA junction is a Y-shaped molecule in which there is no helix-helix stacking. EMBO J (1990) 1.28

Structure and function of chromatin. Annu Rev Genet (1979) 1.26

Kinking of RNA helices by bulged bases, and the structure of the human immunodeficiency virus transactivator response element. J Mol Biol (1992) 1.24

The global folding of four-way helical junctions in RNA, including that in U1 snRNA. Cell (1995) 1.24

Chemical synthesis and cloning of a gene for human beta-urogastrone. Nucleic Acids Res (1982) 1.23

The resolving enzyme CCE1 of yeast opens the structure of the four-way DNA junction. J Mol Biol (1997) 1.21

Thermodynamics of the ColE1 cruciform. Comparisons between probing and topological experiments using single topoisomers. J Mol Biol (1984) 1.21

Exchange between stacking conformers in a four-Way DNA junction. Biochemistry (1998) 1.20

Folding of the four-way RNA junction of the hairpin ribozyme. Biochemistry (1998) 1.20

Chromatin core particle unfolding induced by tryptic cleavage of histones. Nucleic Acids Res (1977) 1.19

Solution structure of a parallel-stranded tetraplex formed by d(TG4T) in the presence of sodium ions by nuclear magnetic resonance spectroscopy. J Mol Biol (1994) 1.18

The ion-induced folding of the hammerhead ribozyme: core sequence changes that perturb folding into the active conformation. RNA (1996) 1.16

T4 endonuclease VII selects and alters the structure of the four-way DNA junction; binding of a resolution-defective mutant enzyme. J Mol Biol (1996) 1.16

Structural recognition and distortion by the DNA junction-resolving enzyme RusA. J Mol Biol (1998) 1.15

A two-state conformational equilibrium for alternating (A-T)n sequences in negatively supercoiled DNA. J Mol Biol (1987) 1.13

The folding of the hairpin ribozyme: dependence on the loops and the junction. RNA (2000) 1.13

The conformation of DNA and protein within chromatin subunits. FEBS Lett (1977) 1.13

Global structure of three-way DNA junctions with and without additional unpaired bases: a fluorescence resonance energy transfer analysis. Biochemistry (1997) 1.11

A simple computer program for calculating, modifying and drawing circular restriction maps. Nucleic Acids Res (1982) 1.11

Dissection of the ion-induced folding of the hammerhead ribozyme using 19F NMR. Proc Natl Acad Sci U S A (2001) 1.10

Activity of a plasmid-borne leu-500 promoter depends on the transcription and translation of an adjacent gene. Proc Natl Acad Sci U S A (1992) 1.10

The structure of cruciforms in supercoiled DNA: probing the single-stranded character of nucleotide bases with bisulphite. EMBO J (1986) 1.09

Supercoiled DNA and cruciform structures. Methods Enzymol (1992) 1.09

Characterization of a Holliday junction-resolving enzyme from Schizosaccharomyces pombe. Mol Cell Biol (1997) 1.09

Two-dimensional gel electrophoresis of circular DNA topoisomers. Methods Enzymol (1992) 1.09

The junction-resolving enzyme T7 endonuclease I: quaternary structure and interaction with DNA. J Mol Biol (1997) 1.08

Dynamic, sequence-dependent DNA structure as exemplified by cruciform extrusion from inverted repeats in negatively supercoiled DNA. Cold Spring Harb Symp Quant Biol (1983) 1.08

DNA supercoiling and the leu-500 promoter mutation of Salmonella typhimurium. EMBO J (1988) 1.08

DNA opens up--supercoiling and heavy breathing. Trends Genet (1988) 1.08

Dynamics of cruciform extrusion in supercoiled DNA: use of a synthetic inverted repeat to study conformational populations. EMBO J (1983) 1.07

Global structure of four-way RNA junctions studied using fluorescence resonance energy transfer. RNA (1998) 1.07