Published in J Mol Biol on November 25, 1984
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Structure- and sequence-specificity of ozone degradation of supercoiled plasmid DNA. Nucleic Acids Res (1986) 0.86
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Similarity between oncogenic v-rel protein and regulatory fnr protein. Nucleic Acids Res (1986) 0.85
Hypoxia blocks in vivo initiation of simian virus 40 replication at a stage preceding origin unwinding. J Virol (1999) 0.85
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Stress-induced cruciform formation in a cloned d(CATG)10 sequence. EMBO J (1986) 0.79
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The structure of the Holliday junction, and its resolution. Cell (1988) 4.00
Fluorescence energy transfer shows that the four-way DNA junction is a right-handed cross of antiparallel molecules. Nature (1989) 2.99
Generation of superhelical torsion by ATP-dependent chromatin remodeling activities. Cell (2000) 2.95
Fluorescence resonance energy transfer analysis of the structure of the four-way DNA junction. Biochemistry (1992) 2.92
Observing the helical geometry of double-stranded DNA in solution by fluorescence resonance energy transfer. Proc Natl Acad Sci U S A (1993) 2.89
The high-resolution crystal structure of a parallel-stranded guanine tetraplex. Science (1994) 2.64
Roles of topoisomerases in maintaining steady-state DNA supercoiling in Escherichia coli. J Biol Chem (2000) 2.58
Human MutSalpha recognizes damaged DNA base pairs containing O6-methylguanine, O4-methylthymine, or the cisplatin-d(GpG) adduct. Proc Natl Acad Sci U S A (1996) 2.57
Cruciform-resolvase interactions in supercoiled DNA. Cell (1984) 2.43
In vivo consequences of plasmid topology. Nature (1981) 2.37
The crystal structure of a parallel-stranded guanine tetraplex at 0.95 A resolution. J Mol Biol (1997) 2.25
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Facile cruciform formation by an (A-T)34 sequence from a Xenopus globin gene. J Mol Biol (1985) 2.15
The contrasting structures of mismatched DNA sequences containing looped-out bases (bulges) and multiple mismatches (bubbles). Nucleic Acids Res (1989) 2.07
RNA bulges and the helical periodicity of double-stranded RNA. Nature (1990) 2.01
DNA--protein interactions. HMG has DNA wrapped up. Nature (1992) 2.01
The supercoil-stabilised cruciform of ColE1 is hyper-reactive to osmium tetroxide. EMBO J (1984) 2.00
The role of metal ions in the conformation of the four-way DNA junction. EMBO J (1990) 1.95
The genetic control of DNA supercoiling in Salmonella typhimurium. EMBO J (1984) 1.83
Kinking of DNA and RNA helices by bulged nucleotides observed by fluorescence resonance energy transfer. Proc Natl Acad Sci U S A (1994) 1.81
Folding of the hairpin ribozyme in its natural conformation achieves close physical proximity of the loops. Mol Cell (1998) 1.76
DNA bending induced by cruciform formation. Nature (1985) 1.74
NMR study of parallel-stranded tetraplex formation by the hexadeoxynucleotide d(TG4T). Nature (1992) 1.65
Importance of specific nucleotides in the folding of the natural form of the hairpin ribozyme. Biochemistry (2001) 1.63
Highly selective chemical modification of cruciform loops by diethyl pyrocarbonate. Nucleic Acids Res (1986) 1.61
Ion-induced folding of the hammerhead ribozyme: a fluorescence resonance energy transfer study. EMBO J (1997) 1.57
The stereochemistry of a four-way DNA junction: a theoretical study. Nucleic Acids Res (1990) 1.52
Superhelical torsion in cellular DNA responds directly to environmental and genetic factors. Proc Natl Acad Sci U S A (1990) 1.51
The anomalous gel migration of a stable cruciform: temperature and salt dependence, and some comparisons with curved DNA. Nucleic Acids Res (1987) 1.51
(A-T)n tracts embedded in random sequence DNA--formation of a structure which is chemically reactive and torsionally deformable. Nucleic Acids Res (1986) 1.50
The structure-selectivity and sequence-preference of the junction-resolving enzyme CCE1 of Saccharomyces cerevisiae. J Mol Biol (1996) 1.49
The structure of the chromatin core particle in solution. Nucleic Acids Res (1977) 1.49
Influence of cation size and charge on the extrusion of a salt-dependent cruciform. J Mol Biol (1987) 1.49
Model for the interaction of DNA junctions and resolving enzymes. J Mol Biol (1991) 1.47
Recognition and manipulation of branched DNA structure by junction-resolving enzymes. J Mol Biol (1997) 1.47
The solution structure of the four-way DNA junction at low-salt conditions: a fluorescence resonance energy transfer analysis. Biophys J (1994) 1.47
Structural perturbation in supercoiled DNA: hypersensitivity to modification by a single-strand-selective chemical reagent conferred by inverted repeat sequences. Nucleic Acids Res (1983) 1.41
HMG box proteins bind to four-way DNA junctions in their open conformation. EMBO J (1998) 1.38
Ionic interactions and the global conformations of the hammerhead ribozyme. Nat Struct Biol (1995) 1.36
Single base mismatches in DNA. Long- and short-range structure probed by analysis of axis trajectory and local chemical reactivity. J Mol Biol (1989) 1.35
Retinoblastoma susceptibility genes contain 5' sequences with a high propensity to form guanine-tetrad structures. Nucleic Acids Res (1992) 1.35
Crystal structure of the Holliday junction resolving enzyme T7 endonuclease I. Nat Struct Biol (2001) 1.33
A dominant influence of flanking sequences on a local structural transition in DNA. Cell (1986) 1.33
The interaction of RNA polymerase II from wheat with supercoiled and linear plasmid templates. Nucleic Acids Res (1979) 1.30
Structure, folding and activity of the VS ribozyme: importance of the 2-3-6 helical junction. EMBO J (2001) 1.30
The kinetic properties of cruciform extrusion are determined by DNA base-sequence. Nucleic Acids Res (1985) 1.29
The A730 loop is an important component of the active site of the VS ribozyme. J Mol Biol (2001) 1.29
The three-way DNA junction is a Y-shaped molecule in which there is no helix-helix stacking. EMBO J (1990) 1.28
Structure and function of chromatin. Annu Rev Genet (1979) 1.26
Kinking of RNA helices by bulged bases, and the structure of the human immunodeficiency virus transactivator response element. J Mol Biol (1992) 1.24
The global folding of four-way helical junctions in RNA, including that in U1 snRNA. Cell (1995) 1.24
Chemical synthesis and cloning of a gene for human beta-urogastrone. Nucleic Acids Res (1982) 1.23
The resolving enzyme CCE1 of yeast opens the structure of the four-way DNA junction. J Mol Biol (1997) 1.21
Exchange between stacking conformers in a four-Way DNA junction. Biochemistry (1998) 1.20
Folding of the four-way RNA junction of the hairpin ribozyme. Biochemistry (1998) 1.20
Chromatin core particle unfolding induced by tryptic cleavage of histones. Nucleic Acids Res (1977) 1.19
Solution structure of a parallel-stranded tetraplex formed by d(TG4T) in the presence of sodium ions by nuclear magnetic resonance spectroscopy. J Mol Biol (1994) 1.18
The ion-induced folding of the hammerhead ribozyme: core sequence changes that perturb folding into the active conformation. RNA (1996) 1.16
T4 endonuclease VII selects and alters the structure of the four-way DNA junction; binding of a resolution-defective mutant enzyme. J Mol Biol (1996) 1.16
Structural recognition and distortion by the DNA junction-resolving enzyme RusA. J Mol Biol (1998) 1.15
A two-state conformational equilibrium for alternating (A-T)n sequences in negatively supercoiled DNA. J Mol Biol (1987) 1.13
The folding of the hairpin ribozyme: dependence on the loops and the junction. RNA (2000) 1.13
The conformation of DNA and protein within chromatin subunits. FEBS Lett (1977) 1.13
Global structure of three-way DNA junctions with and without additional unpaired bases: a fluorescence resonance energy transfer analysis. Biochemistry (1997) 1.11
A simple computer program for calculating, modifying and drawing circular restriction maps. Nucleic Acids Res (1982) 1.11
Activity of a plasmid-borne leu-500 promoter depends on the transcription and translation of an adjacent gene. Proc Natl Acad Sci U S A (1992) 1.10
Dissection of the ion-induced folding of the hammerhead ribozyme using 19F NMR. Proc Natl Acad Sci U S A (2001) 1.10
Characterization of a Holliday junction-resolving enzyme from Schizosaccharomyces pombe. Mol Cell Biol (1997) 1.09
The structure of cruciforms in supercoiled DNA: probing the single-stranded character of nucleotide bases with bisulphite. EMBO J (1986) 1.09
Two-dimensional gel electrophoresis of circular DNA topoisomers. Methods Enzymol (1992) 1.09
Supercoiled DNA and cruciform structures. Methods Enzymol (1992) 1.09
The junction-resolving enzyme T7 endonuclease I: quaternary structure and interaction with DNA. J Mol Biol (1997) 1.08
DNA opens up--supercoiling and heavy breathing. Trends Genet (1988) 1.08
DNA supercoiling and the leu-500 promoter mutation of Salmonella typhimurium. EMBO J (1988) 1.08
Dynamic, sequence-dependent DNA structure as exemplified by cruciform extrusion from inverted repeats in negatively supercoiled DNA. Cold Spring Harb Symp Quant Biol (1983) 1.08
Dynamics of cruciform extrusion in supercoiled DNA: use of a synthetic inverted repeat to study conformational populations. EMBO J (1983) 1.07
Global structure of four-way RNA junctions studied using fluorescence resonance energy transfer. RNA (1998) 1.07
RNA folding and misfolding of the hammerhead ribozyme. Biochemistry (1999) 1.06
Mutational analysis of the DNA binding domain A of chromosomal protein HMG1. Nucleic Acids Res (1994) 1.06
Ensuring productive resolution by the junction-resolving enzyme RuvC: large enhancement of the second-strand cleavage rate. Biochemistry (2000) 1.05
Nuclear magnetic resonance study of a deoxyoligonucleotide duplex containing a three base bulge. J Mol Biol (1993) 1.05
The nature of the interaction of nucleosomes with a eukaryotic RNA polymerase II. Nucleic Acids Res (1979) 1.03
Long range structural communication between sequences in supercoiled DNA. Sequence dependence of contextual influence on cruciform extrusion mechanism. J Biol Chem (1988) 1.03
The structure and properties of histone F2a comprising the heterologous group F2a1 and F2a2 studied by 13C nuclear magnetic resonance. Nucleic Acids Res (1974) 1.03
A nomenclature of junctions and branchpoints in nucleic acids. Nucleic Acids Res (1995) 1.02
Structure and activity of the hairpin ribozyme in its natural junction conformation: effect of metal ions. Biochemistry (1998) 1.01
Tetraplex folding of telomere sequences and the inclusion of adenine bases. EMBO J (1994) 1.01
Elevated unconstrained supercoiling of plasmid DNA generated by transcription and translation of the tetracycline resistance gene in eubacteria. Biochemistry (1994) 1.00
Thermodynamics of ion-induced RNA folding in the hammerhead ribozyme: an isothermal titration calorimetric study. Biochemistry (2001) 0.99
T4 endonuclease VII. Importance of a histidine-aspartate cluster within the zinc-binding domain. J Biol Chem (1996) 0.99
Uranyl photoprobing of a four-way DNA junction: evidence for specific metal ion binding. EMBO J (1994) 0.98
Yeast resolving enzyme CCE1 makes sequential cleavages in DNA junctions within the lifetime of the complex. Biochemistry (2000) 0.98
Near-simultaneous DNA cleavage by the subunits of the junction-resolving enzyme T4 endonuclease VII. EMBO J (1997) 0.98
Cleavage of a four-way DNA junction by a restriction enzyme spanning the point of strand exchange. EMBO J (1991) 0.96
Catalytic and binding mutants of the junction-resolving enzyme endonuclease I of bacteriophage t7: role of acidic residues. Nucleic Acids Res (1999) 0.96
Structures of bulged three-way DNA junctions. Nucleic Acids Res (1993) 0.96
The interactions of enzyme and chemical probes with inverted repeats in supercoiled DNA. J Biomol Struct Dyn (1983) 0.95