Published in J Mol Biol on December 12, 2003
Bacteriophage lambda stabilization by auxiliary protein gpD: timing, location, and mechanism of attachment determined by cryo-EM. Structure (2008) 2.62
Identification of secondary structure elements in intermediate-resolution density maps. Structure (2007) 2.60
Structural and functional similarities between the capsid proteins of bacteriophages T4 and HK97 point to a common ancestry. Proc Natl Acad Sci U S A (2005) 2.53
Virus maturation: dynamics and mechanism of a stabilizing structural transition that leads to infectivity. Curr Opin Struct Biol (2005) 2.06
The generalized transducing Salmonella bacteriophage ES18: complete genome sequence and DNA packaging strategy. J Bacteriol (2005) 2.00
An unexpected twist in viral capsid maturation. Nature (2009) 1.80
Structural analysis of CsoS1A and the protein shell of the Halothiobacillus neapolitanus carboxysome. PLoS Biol (2007) 1.57
Genome sequence, structural proteins, and capsid organization of the cyanophage Syn5: a "horned" bacteriophage of marine synechococcus. J Mol Biol (2007) 1.37
Complete genomic sequence and mass spectrometric analysis of highly diverse, atypical Bacillus thuringiensis phage 0305phi8-36. Virology (2007) 1.21
First complete genome sequence of two Staphylococcus epidermidis bacteriophages. J Bacteriol (2006) 1.21
Crosslinking renders bacteriophage HK97 capsid maturation irreversible and effects an essential stabilization. EMBO J (2005) 1.20
A free energy cascade with locks drives assembly and maturation of bacteriophage HK97 capsid. J Mol Biol (2006) 1.20
Sequence analysis of Leuconostoc mesenteroides bacteriophage Phi1-A4 isolated from an industrial vegetable fermentation. Appl Environ Microbiol (2010) 1.05
Structure of the archaeal head-tailed virus HSTV-1 completes the HK97 fold story. Proc Natl Acad Sci U S A (2013) 1.05
Molecular rearrangements involved in the capsid shell maturation of bacteriophage T7. J Biol Chem (2010) 1.02
Virus capsid expansion driven by the capture of mobile surface loops. Structure (2008) 0.99
Three-dimensional reconstructions of the bacteriophage CUS-3 virion reveal a conserved coat protein I-domain but a distinct tailspike receptor-binding domain. Virology (2014) 0.99
Structure and energetics of encapsidated DNA in bacteriophage HK97 studied by scanning calorimetry and cryo-electron microscopy. J Mol Biol (2009) 0.99
Capsid expansion mechanism of bacteriophage T7 revealed by multistate atomic models derived from cryo-EM reconstructions. Proc Natl Acad Sci U S A (2014) 0.98
Autocatalytic intramolecular isopeptide bond formation in gram-positive bacterial pili: a QM/MM simulation. J Am Chem Soc (2010) 0.97
Protein-DNA interactions determine the shapes of DNA toroids condensed in virus capsids. Biophys J (2011) 0.94
HK97 maturation studied by crystallography and H/2H exchange reveals the structural basis for exothermic particle transitions. J Mol Biol (2010) 0.94
In vitro assembly of the T=13 procapsid of bacteriophage T5 with its scaffolding domain. J Virol (2010) 0.94
Mutational analysis of a conserved glutamic acid required for self-catalyzed cross-linking of bacteriophage HK97 capsids. J Virol (2008) 0.94
Capsid structure and its stability at the late stages of bacteriophage SPP1 assembly. J Virol (2012) 0.94
Structure, adsorption to host, and infection mechanism of virulent lactococcal phage p2. J Virol (2013) 0.93
Sequence and structural characterization of great salt lake bacteriophage CW02, a member of the T7-like supergroup. J Virol (2012) 0.93
Functional domains of the HK97 capsid maturation protease and the mechanisms of protein encapsidation. J Mol Biol (2013) 0.93
A conformational switch involved in maturation of Staphylococcus aureus bacteriophage 80α capsids. J Mol Biol (2010) 0.92
Constructing and validating initial Cα models from subnanometer resolution density maps with pathwalking. Structure (2012) 0.92
Exploring the symmetry and mechanism of virus capsid maturation via an ensemble of pathways. Biophys J (2012) 0.92
Bacteriophage lambda: Early pioneer and still relevant. Virology (2015) 0.91
The genomes, proteomes, and structures of three novel phages that infect the Bacillus cereus group and carry putative virulence factors. J Virol (2014) 0.91
Nature's favorite building block: Deciphering folding and capsid assembly of proteins with the HK97-fold. Virology (2015) 0.91
Maturation in action: CryoEM study of a viral capsid caught during expansion. Structure (2012) 0.89
Mechanical limits of viral capsids. Proc Natl Acad Sci U S A (2007) 0.85
Structure and size determination of bacteriophage P2 and P4 procapsids: function of size responsiveness mutations. J Struct Biol (2012) 0.84
An optimal exposure strategy for cryoprotected virus crystals with lattice constants greater than 1000 A. J Synchrotron Radiat (2008) 0.83
Convergent evolution of pathogenicity islands in helper cos phage interference. Philos Trans R Soc Lond B Biol Sci (2016) 0.82
pH-induced stability switching of the bacteriophage HK97 maturation pathway. J Am Chem Soc (2014) 0.82
Structure of large dsDNA viruses. Biol Chem (2014) 0.82
Unified data resource for cryo-EM. Methods Enzymol (2010) 0.79
Correct Assembly of the Bacteriophage T5 Procapsid Requires Both the Maturation Protease and the Portal Complex. J Mol Biol (2015) 0.79
Confessions of an icosahedral virus crystallographer. Microscopy (Oxf) (2013) 0.79
Accurate model annotation of a near-atomic resolution cryo-EM map. Proc Natl Acad Sci U S A (2017) 0.78
Transient contacts on the exterior of the HK97 procapsid that are essential for capsid assembly. J Mol Biol (2014) 0.78
Cryo-electron microscopy structure of lactococcal siphophage 1358 virion. J Virol (2014) 0.78
Capsomer dynamics and stabilization in the T = 12 marine bacteriophage SIO-2 and its procapsid studied by CryoEM. Structure (2012) 0.78
Structures of giant icosahedral eukaryotic dsDNA viruses. Curr Opin Virol (2011) 0.78
LinkProt: a database collecting information about biological links. Nucleic Acids Res (2016) 0.77
fSUB: normal mode analysis with flexible substructures. J Phys Chem B (2012) 0.76
Sinorhizobium meliloti Phage ΦM9 Defines a New Group of T4 Superfamily Phages with Unusual Genomic Features but a Common T=16 Capsid. J Virol (2015) 0.76
Structure of the hypothetical protein PF0899 from Pyrococcus furiosus at 1.85 A resolution. Acta Crystallogr Sect F Struct Biol Cryst Commun (2007) 0.75
A general method for computing the Homfly polynomial of DNA double crossover 3-regular links. PLoS One (2015) 0.75
Structural characterization of encapsulated ferritin provides insight into iron storage in bacterial nanocompartments. Elife (2016) 0.75
Transmission electron microscopy enables the reconstruction of the catenane and ring forms of CS2 hydrolase. Chem Commun (Camb) (2014) 0.75
Structure of a headful DNA-packaging bacterial virus at 2.9 Å resolution by electron cryo-microscopy. Proc Natl Acad Sci U S A (2017) 0.75
Genome Sequence of Mycobacteriophage Mindy. Genome Announc (2015) 0.75
Genome Sequence of Mycobacteriophage Phayonce. Genome Announc (2015) 0.75
Cryo-EM structure of the bacteriophage T4 isometric head at 3.3-Å resolution and its relevance to the assembly of icosahedral viruses. Proc Natl Acad Sci U S A (2017) 0.75
Flexible connectors between capsomer subunits that regulate capsid assembly. J Mol Biol (2017) 0.75
Origins of highly mosaic mycobacteriophage genomes. Cell (2003) 9.78
Exploring the mycobacteriophage metaproteome: phage genomics as an educational platform. PLoS Genet (2006) 4.69
Phamerator: a bioinformatic tool for comparative bacteriophage genomics. BMC Bioinformatics (2011) 3.42
The structure of an infectious P22 virion shows the signal for headful DNA packaging. Science (2006) 3.33
Phage genomics: small is beautiful. Cell (2002) 3.26
Inquiry learning. Teaching scientific inquiry. Science (2006) 3.13
Comparative genomic analysis of 60 Mycobacteriophage genomes: genome clustering, gene acquisition, and gene size. J Mol Biol (2010) 3.12
Conserved translational frameshift in dsDNA bacteriophage tail assembly genes. Mol Cell (2004) 2.99
Bacteriophage lambda stabilization by auxiliary protein gpD: timing, location, and mechanism of attachment determined by cryo-EM. Structure (2008) 2.62
Imbroglios of viral taxonomy: genetic exchange and failings of phenetic approaches. J Bacteriol (2002) 2.53
VIPERdb: a relational database for structural virology. Nucleic Acids Res (2006) 2.46
VIPERdb2: an enhanced and web API enabled relational database for structural virology. Nucleic Acids Res (2008) 2.38
Compensatory adaptation to the deleterious effect of antibiotic resistance in Salmonella typhimurium. Mol Microbiol (2002) 2.32
L-A virus at 3.4 A resolution reveals particle architecture and mRNA decapping mechanism. Nat Struct Biol (2002) 2.30
Expanding the diversity of mycobacteriophages: insights into genome architecture and evolution. PLoS One (2011) 2.29
Structure of an archaeal virus capsid protein reveals a common ancestry to eukaryotic and bacterial viruses. Proc Natl Acad Sci U S A (2005) 2.26
Bacteriophage Mu genome sequence: analysis and comparison with Mu-like prophages in Haemophilus, Neisseria and Deinococcus. J Mol Biol (2002) 2.26
On the nature of mycobacteriophage diversity and host preference. Virology (2012) 2.15
The structure of a thermophilic archaeal virus shows a double-stranded DNA viral capsid type that spans all domains of life. Proc Natl Acad Sci U S A (2004) 2.13
Bacteriophages and their genomes. Curr Opin Virol (2011) 2.01
The generalized transducing Salmonella bacteriophage ES18: complete genome sequence and DNA packaging strategy. J Bacteriol (2005) 2.00
An unexpected twist in viral capsid maturation. Nature (2009) 1.80
Genomics of bacterial and archaeal viruses: dynamics within the prokaryotic virosphere. Microbiol Mol Biol Rev (2011) 1.78
Three-dimensional structure of a viral genome-delivery portal vertex. Nat Struct Mol Biol (2011) 1.71
Highly discriminatory binding of capsid-cementing proteins in bacteriophage L. Structure (2006) 1.71
New addresses on an addressable virus nanoblock; uniquely reactive Lys residues on cowpea mosaic virus. Chem Biol (2004) 1.67
Complex spatial distribution and dynamics of an abundant Escherichia coli outer membrane protein, LamB. Mol Microbiol (2004) 1.66
Natural supramolecular building blocks. Wild-type cowpea mosaic virus. Chem Biol (2002) 1.64
Comparative genomics of the mycobacteriophages: insights into bacteriophage evolution. Res Microbiol (2008) 1.61
Genomic and structural analysis of Syn9, a cyanophage infecting marine Prochlorococcus and Synechococcus. Environ Microbiol (2007) 1.58
Cluster K mycobacteriophages: insights into the evolutionary origins of mycobacteriophage TM4. PLoS One (2011) 1.54
The genome of Bacillus subtilis bacteriophage SPO1. J Mol Biol (2009) 1.53
Multiple organic anion transporters contribute to net renal excretion of uric acid. Physiol Genomics (2008) 1.53
Capsid conformational sampling in HK97 maturation visualized by X-ray crystallography and cryo-EM. Structure (2006) 1.50
Raw sewage harbors diverse viral populations. MBio (2011) 1.50
Icosahedral virus particles as addressable nanoscale building blocks. Angew Chem Int Ed Engl (2002) 1.49
The pKO2 linear plasmid prophage of Klebsiella oxytoca. J Bacteriol (2004) 1.48
P22 coat protein structures reveal a novel mechanism for capsid maturation: stability without auxiliary proteins or chemical crosslinks. Structure (2010) 1.44
Recoding in bacteriophages and bacterial IS elements. Trends Genet (2006) 1.43
Crystal structure of the DNA-recognition component of the bacterial virus Sf6 genome-packaging machine. Proc Natl Acad Sci U S A (2010) 1.42
The combination of chemical fixation procedures with high pressure freezing and freeze substitution preserves highly labile tissue ultrastructure for electron tomography applications. J Struct Biol (2007) 1.42
Hybrid virus-polymer materials. 1. Synthesis and properties of PEG-decorated cowpea mosaic virus. Biomacromolecules (2003) 1.42
Large-scale, pH-dependent, quaternary structure changes in an RNA virus capsid are reversible in the absence of subunit autoproteolysis. J Virol (2002) 1.37
Genomic characterization of mycobacteriophage Giles: evidence for phage acquisition of host DNA by illegitimate recombination. J Bacteriol (2008) 1.37
Genome sequence, structural proteins, and capsid organization of the cyanophage Syn5: a "horned" bacteriophage of marine synechococcus. J Mol Biol (2007) 1.37
Assembly architecture and DNA binding of the bacteriophage P22 terminase small subunit. J Mol Biol (2008) 1.37
Nodavirus coat protein imposes dodecahedral RNA structure independent of nucleotide sequence and length. J Virol (2004) 1.35
Streptococcal M1 protein constructs a pathological host fibrinogen network. Nature (2011) 1.32
Mycobacteriophages BPs, Angel and Halo: comparative genomics reveals a novel class of ultra-small mobile genetic elements. Microbiology (2009) 1.32
A statistical approach to computer processing of cryo-electron microscope images: virion classification and 3-D reconstruction. J Struct Biol (2003) 1.31
Variability analysis of human plasma and cerebral spinal fluid reveals statistical significance of changes in mass spectrometry-based metabolomics data. Anal Chem (2009) 1.30
Comparative genomic analysis of mycobacteriophage Tweety: evolutionary insights and construction of compatible site-specific integration vectors for mycobacteria. Microbiology (2007) 1.30
Fitness-compensatory mutations in rifampicin-resistant RNA polymerase. Mol Microbiol (2012) 1.29
Natural supramolecular building blocks. Cysteine-added mutants of cowpea mosaic virus. Chem Biol (2002) 1.29
Peering down the barrel of a bacteriophage portal: the genome packaging and release valve in p22. Structure (2011) 1.28
The P22 tail machine at subnanometer resolution reveals the architecture of an infection conduit. Structure (2009) 1.27
Host RNAs, including transposons, are encapsidated by a eukaryotic single-stranded RNA virus. Proc Natl Acad Sci U S A (2012) 1.27
The Prohead-I structure of bacteriophage HK97: implications for scaffold-mediated control of particle assembly and maturation. J Mol Biol (2011) 1.27
Control of crosslinking by quaternary structure changes during bacteriophage HK97 maturation. Mol Cell (2004) 1.25
Three-dimensional structure of the bacteriophage P22 tail machine. EMBO J (2005) 1.25
Time-resolved molecular dynamics of bacteriophage HK97 capsid maturation interpreted by electron cryo-microscopy and X-ray crystallography. J Struct Biol (2005) 1.24
Complete genomic sequence of the virulent Salmonella bacteriophage SP6. J Bacteriol (2004) 1.24
Metabolomics reveals amino acids contribute to variation in response to simvastatin treatment. PLoS One (2012) 1.22
Visualizing flock house virus infection in Drosophila cells with correlated fluorescence and electron microscopy. J Struct Biol (2007) 1.21
Evidence that a local refolding event triggers maturation of HK97 bacteriophage capsid. J Mol Biol (2004) 1.20
Preliminary crystallographic analysis of the bacteriophage P22 portal protein. J Struct Biol (2002) 1.20
Crosslinking renders bacteriophage HK97 capsid maturation irreversible and effects an essential stabilization. EMBO J (2005) 1.20
A thermally induced phase transition in a viral capsid transforms the hexamers, leaving the pentamers unchanged. J Struct Biol (2006) 1.20
A free energy cascade with locks drives assembly and maturation of bacteriophage HK97 capsid. J Mol Biol (2006) 1.20
Chemical conjugation of heterologous proteins on the surface of Cowpea mosaic virus. Bioconjug Chem (2004) 1.20
Virus maturation. Annu Rev Biophys (2012) 1.20
Cooperative reorganization of a 420 subunit virus capsid. J Mol Biol (2005) 1.19
Activation, exposure and penetration of virally encoded, membrane-active polypeptides during non-enveloped virus entry. Curr Protein Pept Sci (2008) 1.18
The refined structure of Nudaurelia capensis omega virus reveals control elements for a T = 4 capsid maturation. Virology (2004) 1.17
Evolutionary relationships among actinophages and a putative adaptation for growth in Streptomyces spp. J Bacteriol (2013) 1.17
A general method to quantify quasi-equivalence in icosahedral viruses. J Mol Biol (2002) 1.16
Structural and electrostatic characterization of pariacoto virus: implications for viral assembly. Biopolymers (2009) 1.15
Studying 18 MDa virus assemblies with native mass spectrometry. Angew Chem Int Ed Engl (2013) 1.15
The role of subunit hinges and molecular "switches" in the control of viral capsid polymorphism. J Struct Biol (2006) 1.14
Virus capsid dissolution studied by microsecond molecular dynamics simulations. PLoS Comput Biol (2012) 1.14