PubRank

Mark Stitt

Author PubWeight™ 206.29‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes. Plant J 2004 15.51
2 Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. Plant Physiol 2005 15.10
3 RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics. Nucleic Acids Res 2012 7.48
4 GMD@CSB.DB: the Golm Metabolome Database. Bioinformatics 2004 7.33
5 Real-time RT-PCR profiling of over 1400 Arabidopsis transcription factors: unprecedented sensitivity reveals novel root- and shoot-specific genes. Plant J 2004 6.58
6 Genome-wide reprogramming of primary and secondary metabolism, protein synthesis, cellular growth processes, and the regulatory infrastructure of Arabidopsis in response to nitrogen. Plant Physiol 2004 4.99
7 Extension of the visualization tool MapMan to allow statistical analysis of arrays, display of corresponding genes, and comparison with known responses. Plant Physiol 2005 4.34
8 PHO2, microRNA399, and PHR1 define a phosphate-signaling pathway in plants. Plant Physiol 2006 4.33
9 Sugars and circadian regulation make major contributions to the global regulation of diurnal gene expression in Arabidopsis. Plant Cell 2005 4.13
10 Coordination of carbon supply and plant growth. Plant Cell Environ 2007 3.63
11 Sugar-induced increases in trehalose 6-phosphate are correlated with redox activation of ADPglucose pyrophosphorylase and higher rates of starch synthesis in Arabidopsis thaliana. Biochem J 2006 3.36
12 PageMan: an interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments. BMC Bioinformatics 2006 3.34
13 A Robot-based platform to measure multiple enzyme activities in Arabidopsis using a set of cycling assays: comparison of changes of enzyme activities and transcript levels during diurnal cycles and in prolonged darkness. Plant Cell 2004 3.24
14 A guide to using MapMan to visualize and compare Omics data in plants: a case study in the crop species, Maize. Plant Cell Environ 2009 2.77
15 Adjustment of diurnal starch turnover to short days: depletion of sugar during the night leads to a temporary inhibition of carbohydrate utilization, accumulation of sugars and post-translational activation of ADP-glucose pyrophosphorylase in the following light period. Plant J 2004 2.72
16 Genome-wide reprogramming of metabolism and regulatory networks of Arabidopsis in response to phosphorus. Plant Cell Environ 2007 2.71
17 Genomic and metabolic prediction of complex heterotic traits in hybrid maize. Nat Genet 2012 2.70
18 The interdependence of mechanisms underlying climate-driven vegetation mortality. Trends Ecol Evol 2011 2.67
19 Regulation of flowering by trehalose-6-phosphate signaling in Arabidopsis thaliana. Science 2013 2.66
20 ADP-glucose pyrophosphorylase is activated by posttranslational redox-modification in response to light and to sugars in leaves of Arabidopsis and other plant species. Plant Physiol 2003 2.55
21 Circadian control of carbohydrate availability for growth in Arabidopsis plants at night. Proc Natl Acad Sci U S A 2010 2.52
22 Pyrimidine and purine biosynthesis and degradation in plants. Annu Rev Plant Biol 2006 2.48
23 Starch as a major integrator in the regulation of plant growth. Proc Natl Acad Sci U S A 2009 2.47
24 Global transcript levels respond to small changes of the carbon status during progressive exhaustion of carbohydrates in Arabidopsis rosettes. Plant Physiol 2008 2.43
25 Starch synthesis in potato tubers is regulated by post-translational redox modification of ADP-glucose pyrophosphorylase: a novel regulatory mechanism linking starch synthesis to the sucrose supply. Plant Cell 2002 2.40
26 Integration of metabolite with transcript and enzyme activity profiling during diurnal cycles in Arabidopsis rosettes. Genome Biol 2006 2.25
27 Adjustment of growth, starch turnover, protein content and central metabolism to a decrease of the carbon supply when Arabidopsis is grown in very short photoperiods. Plant Cell Environ 2009 2.14
28 Temporal responses of transcripts, enzyme activities and metabolites after adding sucrose to carbon-deprived Arabidopsis seedlings. Plant J 2007 2.09
29 Sensitive and high throughput metabolite assays for inorganic pyrophosphate, ADPGlc, nucleotide phosphates, and glycolytic intermediates based on a novel enzymic cycling system. Plant J 2002 2.08
30 Reprogramming a maize plant: transcriptional and metabolic changes induced by the fungal biotroph Ustilago maydis. Plant J 2008 1.94
31 Ribosome and transcript copy numbers, polysome occupancy and enzyme dynamics in Arabidopsis. Mol Syst Biol 2009 1.86
32 Robin: an intuitive wizard application for R-based expression microarray quality assessment and analysis. Plant Physiol 2010 1.82
33 Metabolic and signaling aspects underpinning the regulation of plant carbon nitrogen interactions. Mol Plant 2010 1.75
34 Barley grain maturation and germination: metabolic pathway and regulatory network commonalities and differences highlighted by new MapMan/PageMan profiling tools. Plant Physiol 2008 1.73
35 Variation of enzyme activities and metabolite levels in 24 Arabidopsis accessions growing in carbon-limited conditions. Plant Physiol 2006 1.72
36 Mercator: a fast and simple web server for genome scale functional annotation of plant sequence data. Plant Cell Environ 2013 1.69
37 Genome-wide association mapping of leaf metabolic profiles for dissecting complex traits in maize. Proc Natl Acad Sci U S A 2012 1.61
38 Recommendations for reporting metabolite data. Plant Cell 2011 1.61
39 The role of raffinose in the cold acclimation response of Arabidopsis thaliana. FEBS Lett 2004 1.52
40 Conversion of MapMan to allow the analysis of transcript data from Solanaceous species: effects of genetic and environmental alterations in energy metabolism in the leaf. Plant Mol Biol 2006 1.52
41 Low levels of ribosomal RNA partly account for the very high photosynthetic phosphorus-use efficiency of Proteaceae species. Plant Cell Environ 2014 1.51
42 Arabidopsis plants acclimate to water deficit at low cost through changes of carbon usage: an integrated perspective using growth, metabolite, enzyme, and gene expression analysis. Plant Physiol 2010 1.46
43 Increased leaf size: different means to an end. Plant Physiol 2010 1.45
44 Network analysis of enzyme activities and metabolite levels and their relationship to biomass in a large panel of Arabidopsis accessions. Plant Cell 2010 1.41
45 Malate plays a crucial role in starch metabolism, ripening, and soluble solid content of tomato fruit and affects postharvest softening. Plant Cell 2011 1.40
46 Next generation of elevated [CO2] experiments with crops: a critical investment for feeding the future world. Plant Cell Environ 2008 1.39
47 Trehalose metabolism in plants. Plant J 2014 1.39
48 Systems-based analysis of Arabidopsis leaf growth reveals adaptation to water deficit. Mol Syst Biol 2012 1.38
49 Circadian control of root elongation and C partitioning in Arabidopsis thaliana. Plant Cell Environ 2011 1.37
50 Metabolic fluxes in an illuminated Arabidopsis rosette. Plant Cell 2013 1.36
51 Regulation of secondary metabolism by the carbon-nitrogen status in tobacco: nitrate inhibits large sectors of phenylpropanoid metabolism. Plant J 2006 1.35
52 Metabolite profiling in plant biology: platforms and destinations. Genome Biol 2004 1.33
53 Increased C availability at elevated carbon dioxide concentration improves N assimilation in a legume. Plant Cell Environ 2006 1.31
54 Use of reverse-phase liquid chromatography, linked to tandem mass spectrometry, to profile the Calvin cycle and other metabolic intermediates in Arabidopsis rosettes at different carbon dioxide concentrations. Plant J 2009 1.31
55 Adjustment of growth and central metabolism to a mild but sustained nitrogen-limitation in Arabidopsis. Plant Cell Environ 2008 1.30
56 Multilevel genomic analysis of the response of transcripts, enzyme activities and metabolites in Arabidopsis rosettes to a progressive decrease of temperature in the non-freezing range. Plant Cell Environ 2007 1.28
57 Systems-level analysis of nitrogen starvation-induced modifications of carbon metabolism in a Chlamydomonas reinhardtii starchless mutant. Plant Cell 2013 1.27
58 A community resource for high-throughput quantitative RT-PCR analysis of transcription factor gene expression in Medicago truncatula. Plant Methods 2008 1.27
59 The lipopolysaccharide of Sinorhizobium meliloti suppresses defense-associated gene expression in cell cultures of the host plant Medicago truncatula. Plant Physiol 2007 1.27
60 Combined transcript and metabolite profiling of Arabidopsis leaves reveals fundamental effects of the thiol-disulfide status on plant metabolism. Plant Physiol 2006 1.26
61 Multilevel analysis of primary metabolism provides new insights into the role of potassium nutrition for glycolysis and nitrogen assimilation in Arabidopsis roots. Plant Physiol 2009 1.26
62 Proteaceae from severely phosphorus-impoverished soils extensively replace phospholipids with galactolipids and sulfolipids during leaf development to achieve a high photosynthetic phosphorus-use-efficiency. New Phytol 2012 1.24
63 Adaptation of the MapMan ontology to biotic stress responses: application in solanaceous species. Plant Methods 2007 1.24
64 On the discordance of metabolomics with proteomics and transcriptomics: coping with increasing complexity in logic, chemistry, and network interactions scientific correspondence. Plant Physiol 2012 1.23
65 Feedback inhibition of starch degradation in Arabidopsis leaves mediated by trehalose 6-phosphate. Plant Physiol 2013 1.22
66 The sucrose-trehalose 6-phosphate (Tre6P) nexus: specificity and mechanisms of sucrose signalling by Tre6P. J Exp Bot 2014 1.21
67 Flux an important, but neglected, component of functional genomics. Curr Opin Plant Biol 2005 1.18
68 Description and applications of a rapid and sensitive non-radioactive microplate-based assay for maximum and initial activity of D-ribulose-1,5-bisphosphate carboxylase/oxygenase. Plant Cell Environ 2007 1.17
69 Arabidopsis coordinates the diurnal regulation of carbon allocation and growth across a wide range of photoperiods. Mol Plant 2013 1.15
70 Gene expression profiling in susceptible interaction of grapevine with its fungal pathogen Eutypa lata: extending MapMan ontology for grapevine. BMC Plant Biol 2009 1.15
71 Integrative analyses of genetic variation in enzyme activities of primary carbohydrate metabolism reveal distinct modes of regulation in Arabidopsis thaliana. Genome Biol 2008 1.15
72 D-Glucose sensing by a plasma membrane regulator of G signaling protein, AtRGS1. FEBS Lett 2008 1.13
73 Decreased Rubisco activity leads to dramatic changes of nitrate metabolism, amino acid metabolism and the levels of phenylpropanoids and nicotine in tobacco antisense RBCS transformants. Plant J 2002 1.11
74 Enzyme activity profiles during fruit development in tomato cultivars and Solanum pennellii. Plant Physiol 2010 1.10
75 Identification of enzyme activity quantitative trait loci in a Solanum lycopersicum x Solanum pennellii introgression line population. Plant Physiol 2011 1.09
76 Diurnal changes of polysome loading track sucrose content in the rosette of wild-type arabidopsis and the starchless pgm mutant. Plant Physiol 2013 1.07
77 Impact of the C-N status on the amino acid profile in tobacco source leaves. Plant Cell Environ 2006 1.05
78 Xeml Lab: a tool that supports the design of experiments at a graphical interface and generates computer-readable metadata files, which capture information about genotypes, growth conditions, environmental perturbations and sampling strategy. Plant Cell Environ 2009 1.05
79 Arabidopsis has a cytosolic fumarase required for the massive allocation of photosynthate into fumaric acid and for rapid plant growth on high nitrogen. Plant J 2010 1.04
80 Mutagenesis of cysteine 81 prevents dimerization of the APS1 subunit of ADP-glucose pyrophosphorylase and alters diurnal starch turnover in Arabidopsis thaliana leaves. Plant J 2011 0.97
81 Impact of the carbon and nitrogen supply on relationships and connectivity between metabolism and biomass in a broad panel of Arabidopsis accessions. Plant Physiol 2013 0.97
82 Fine quantitative trait loci mapping of carbon and nitrogen metabolism enzyme activities and seedling biomass in the maize IBM mapping population. Plant Physiol 2010 0.97
83 Nitrate regulates floral induction in Arabidopsis, acting independently of light, gibberellin and autonomous pathways. Planta 2010 0.94
84 Tomato fruit photosynthesis is seemingly unimportant in primary metabolism and ripening but plays a considerable role in seed development. Plant Physiol 2011 0.93
85 Antisense inhibition of enolase strongly limits the metabolism of aromatic amino acids, but has only minor effects on respiration in leaves of transgenic tobacco plants. New Phytol 2009 0.92
86 Glycine decarboxylase controls photosynthesis and plant growth. FEBS Lett 2012 0.92
87 Does elevated atmospheric [CO2] alter diurnal C uptake and the balance of C and N metabolites in growing and fully expanded soybean leaves? J Exp Bot 2006 0.92
88 Metabolism and growth in Arabidopsis depend on the daytime temperature but are temperature-compensated against cool nights. Plant Cell 2012 0.91
89 From models to crop species: caveats and solutions for translational metabolomics. Front Plant Sci 2011 0.91
90 Adjustment of carbon fluxes to light conditions regulates the daily turnover of starch in plants: a computational model. Mol Biosyst 2014 0.91
91 Genetic analysis of central carbon metabolism unveils an amino acid substitution that alters maize NAD-dependent isocitrate dehydrogenase activity. PLoS One 2010 0.90
92 Target-based discovery of novel herbicides. Curr Opin Plant Biol 2004 0.90
93 Determining novel functions of Arabidopsis 14-3-3 proteins in central metabolic processes. BMC Syst Biol 2011 0.89
94 Downregulation of pyrophosphate: D-fructose-6-phosphate 1-phosphotransferase activity in sugarcane culms enhances sucrose accumulation due to elevated hexose-phosphate levels. Planta 2009 0.87
95 Structured patterns in geographic variability of metabolic phenotypes in Arabidopsis thaliana. Nat Commun 2012 0.86
96 Mild reductions in cytosolic NADP-dependent isocitrate dehydrogenase activity result in lower amino acid contents and pigmentation without impacting growth. Amino Acids 2010 0.86
97 Fructokinase is required for carbon partitioning to cellulose in aspen wood. Plant J 2012 0.86
98 Single feature polymorphism (SFP)-based selective sweep identification and association mapping of growth-related metabolic traits in Arabidopsis thaliana. BMC Genomics 2010 0.86
99 TIME FOR COFFEE is an essential component in the maintenance of metabolic homeostasis in Arabidopsis thaliana. Plant J 2013 0.83
100 Relationship between starch degradation and carbon demand for maintenance and growth in Arabidopsis thaliana in different irradiance and temperature regimes. Plant Cell Environ 2014 0.82
101 Involvement of microRNA-related regulatory pathways in the glucose-mediated control of Arabidopsis early seedling development. J Exp Bot 2013 0.81
102 Large-scale phenotyping of transgenic tobacco plants (Nicotiana tabacum) to identify essential leaf functions. Plant Biotechnol J 2007 0.80
103 Novel glutamate dehydrogenase genes show increased transcript and protein abundances in mature tomato fruits. J Plant Physiol 2012 0.80
104 Challenges in elevated CO2 experiments on forests. Trends Plant Sci 2009 0.78
105 Use of TILLING and robotised enzyme assays to generate an allelic series of Arabidopsis thaliana mutants with altered ADP-glucose pyrophosphorylase activity. J Plant Physiol 2011 0.78