Published in BMC Plant Biol on August 05, 2009
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'Bois noir' phytoplasma induces significant reprogramming of the leaf transcriptome in the field grown grapevine. BMC Genomics (2009) 1.17
General and species-specific transcriptional responses to downy mildew infection in a susceptible (Vitis vinifera) and a resistant (V. riparia) grapevine species. BMC Genomics (2010) 1.17
Transcriptional analysis of late ripening stages of grapevine berry. BMC Plant Biol (2011) 1.11
Modulation of protein phosphorylation, N-glycosylation and Lys-acetylation in grape (Vitis vinifera) mesocarp and exocarp owing to Lobesia botrana infection. Mol Cell Proteomics (2012) 1.08
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Extending MapMan Ontology to Tobacco for Visualization of Gene Expression. Dataset Pap Biol (2013) 0.86
Analysis of ripening-related gene expression in papaya using an Arabidopsis-based microarray. BMC Plant Biol (2012) 0.83
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An optimized grapevine RNA isolation procedure and statistical determination of reference genes for real-time RT-PCR during berry development. BMC Plant Biol (2006) 4.63
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Extension of the visualization tool MapMan to allow statistical analysis of arrays, display of corresponding genes, and comparison with known responses. Plant Physiol (2005) 4.34
The hormone content of ripening grape berries and the effects of growth substance treatments. Plant Physiol (1973) 3.54
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Loss of anthocyanins in red-wine grape under high temperature. J Exp Bot (2007) 2.21
Transcriptomic and metabolite analyses of Cabernet Sauvignon grape berry development. BMC Genomics (2007) 2.13
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Resveratrol as an antioxidant and pro-oxidant agent: mechanisms and clinical implications. Biochem Soc Trans (2007) 1.83
Ectopic expression of VvMybPA2 promotes proanthocyanidin biosynthesis in grapevine and suggests additional targets in the pathway. Plant Physiol (2008) 1.81
Genome-wide transcriptional analysis of grapevine berry ripening reveals a set of genes similarly modulated during three seasons and the occurrence of an oxidative burst at vèraison. BMC Genomics (2007) 1.67
Tissue-specific mRNA expression profiling in grape berry tissues. BMC Genomics (2007) 1.63
Grapes on steroids. Brassinosteroids are involved in grape berry ripening. Plant Physiol (2005) 1.61
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Conversion of MapMan to allow the analysis of transcript data from Solanaceous species: effects of genetic and environmental alterations in energy metabolism in the leaf. Plant Mol Biol (2006) 1.52
Powdery mildew induces defense-oriented reprogramming of the transcriptome in a susceptible but not in a resistant grapevine. Plant Physiol (2007) 1.50
The role of plant defence proteins in fungal pathogenesis. Mol Plant Pathol (2007) 1.47
The UniProtKB/Swiss-Prot knowledgebase and its Plant Proteome Annotation Program. J Proteomics (2008) 1.38
Metabolic engineering of potato tuber carotenoids through tuber-specific silencing of lycopene epsilon cyclase. BMC Plant Biol (2006) 1.37
Wine phenolics. Ann N Y Acad Sci (2002) 1.36
Ripening and genotype control stilbene accumulation in healthy grapes. J Agric Food Chem (2008) 1.34
Strategies for transgenic manipulation of monoterpene biosynthesis in plants. Trends Plant Sci (2002) 1.30
The lipopolysaccharide of Sinorhizobium meliloti suppresses defense-associated gene expression in cell cultures of the host plant Medicago truncatula. Plant Physiol (2007) 1.27
Gene expression associated with compatible viral diseases in grapevine cultivars. Funct Integr Genomics (2006) 1.25
Adaptation of the MapMan ontology to biotic stress responses: application in solanaceous species. Plant Methods (2007) 1.24
Gene expression analyses in individual grape (Vitis vinifera L.) berries during ripening initiation reveal that pigmentation intensity is a valid indicator of developmental staging within the cluster. Plant Mol Biol (2008) 1.23
Review of the pharmacological effects of Vitis vinifera (Grape) and its bioactive compounds. Phytother Res (2009) 1.17
Transcript abundance profiles reveal larger and more complex responses of grapevine to chilling compared to osmotic and salinity stress. Funct Integr Genomics (2007) 1.15
Transcriptional and metabolic profiling of grape (Vitis vinifera L.) leaves unravel possible innate resistance against pathogenic fungi. J Exp Bot (2008) 1.03
Polygalacturonase-inhibiting protein (PGIP) in plant defence: a structural view. Phytochemistry (2006) 1.00
Engineering grapevine for increased resistance to fungal pathogens without compromising wine stability. Trends Biotechnol (2004) 0.98
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Molecular identification and detection of Eutypa lata in grapevine. Mycol Res (2005) 0.88
Secondary metabolites of the grapevine pathogen Eutypa lata inhibit mitochondrial respiration, based on a model bioassay using the yeast Saccharomyces cerevisiae. Curr Microbiol (2004) 0.84
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Control of anthocyanin biosynthesis pathway gene expression by eutypine, a toxin from Eutypa lata, in grape cell tissue cultures. J Plant Physiol (2003) 0.78
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Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. Plant Physiol (2005) 15.10
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Real-time RT-PCR profiling of over 1400 Arabidopsis transcription factors: unprecedented sensitivity reveals novel root- and shoot-specific genes. Plant J (2004) 6.58
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A high quality draft consensus sequence of the genome of a heterozygous grapevine variety. PLoS One (2007) 5.62
Genome-wide reprogramming of primary and secondary metabolism, protein synthesis, cellular growth processes, and the regulatory infrastructure of Arabidopsis in response to nitrogen. Plant Physiol (2004) 4.99
Extension of the visualization tool MapMan to allow statistical analysis of arrays, display of corresponding genes, and comparison with known responses. Plant Physiol (2005) 4.34
PHO2, microRNA399, and PHR1 define a phosphate-signaling pathway in plants. Plant Physiol (2006) 4.33
Sugars and circadian regulation make major contributions to the global regulation of diurnal gene expression in Arabidopsis. Plant Cell (2005) 4.13
Coordination of carbon supply and plant growth. Plant Cell Environ (2007) 3.63
Sugar-induced increases in trehalose 6-phosphate are correlated with redox activation of ADPglucose pyrophosphorylase and higher rates of starch synthesis in Arabidopsis thaliana. Biochem J (2006) 3.36
PageMan: an interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments. BMC Bioinformatics (2006) 3.34
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A guide to using MapMan to visualize and compare Omics data in plants: a case study in the crop species, Maize. Plant Cell Environ (2009) 2.77
Genome-wide reprogramming of metabolism and regulatory networks of Arabidopsis in response to phosphorus. Plant Cell Environ (2007) 2.71
Genomic and metabolic prediction of complex heterotic traits in hybrid maize. Nat Genet (2012) 2.70
The interdependence of mechanisms underlying climate-driven vegetation mortality. Trends Ecol Evol (2011) 2.67
Regulation of flowering by trehalose-6-phosphate signaling in Arabidopsis thaliana. Science (2013) 2.66
Recent advances in the transcriptional regulation of the flavonoid biosynthetic pathway. J Exp Bot (2011) 2.66
Integrated analysis of metabolite and transcript levels reveals the metabolic shifts that underlie tomato fruit development and highlight regulatory aspects of metabolic network behavior. Plant Physiol (2006) 2.55
ADP-glucose pyrophosphorylase is activated by posttranslational redox-modification in response to light and to sugars in leaves of Arabidopsis and other plant species. Plant Physiol (2003) 2.55
Circadian control of carbohydrate availability for growth in Arabidopsis plants at night. Proc Natl Acad Sci U S A (2010) 2.52
Pyrimidine and purine biosynthesis and degradation in plants. Annu Rev Plant Biol (2006) 2.48
Starch as a major integrator in the regulation of plant growth. Proc Natl Acad Sci U S A (2009) 2.47
Multicolor bimolecular fluorescence complementation reveals simultaneous formation of alternative CBL/CIPK complexes in planta. Plant J (2008) 2.44
Global transcript levels respond to small changes of the carbon status during progressive exhaustion of carbohydrates in Arabidopsis rosettes. Plant Physiol (2008) 2.43
Starch synthesis in potato tubers is regulated by post-translational redox modification of ADP-glucose pyrophosphorylase: a novel regulatory mechanism linking starch synthesis to the sucrose supply. Plant Cell (2002) 2.40
Integration of metabolite with transcript and enzyme activity profiling during diurnal cycles in Arabidopsis rosettes. Genome Biol (2006) 2.25
Adjustment of growth, starch turnover, protein content and central metabolism to a decrease of the carbon supply when Arabidopsis is grown in very short photoperiods. Plant Cell Environ (2009) 2.14
Quantitation in mass-spectrometry-based proteomics. Annu Rev Plant Biol (2010) 2.14
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Temporal responses of transcripts, enzyme activities and metabolites after adding sucrose to carbon-deprived Arabidopsis seedlings. Plant J (2007) 2.09
Sensitive and high throughput metabolite assays for inorganic pyrophosphate, ADPGlc, nucleotide phosphates, and glycolytic intermediates based on a novel enzymic cycling system. Plant J (2002) 2.08
Effects of abiotic stress on plants: a systems biology perspective. BMC Plant Biol (2011) 2.04
Reprogramming a maize plant: transcriptional and metabolic changes induced by the fungal biotroph Ustilago maydis. Plant J (2008) 1.94
Isogene specific oligo arrays reveal multifaceted changes in gene expression during grape berry (Vitis vinifera L.) development. Planta (2005) 1.93
Ribosome and transcript copy numbers, polysome occupancy and enzyme dynamics in Arabidopsis. Mol Syst Biol (2009) 1.86
Robin: an intuitive wizard application for R-based expression microarray quality assessment and analysis. Plant Physiol (2010) 1.82
Metabolic and signaling aspects underpinning the regulation of plant carbon nitrogen interactions. Mol Plant (2010) 1.75
Barley grain maturation and germination: metabolic pathway and regulatory network commonalities and differences highlighted by new MapMan/PageMan profiling tools. Plant Physiol (2008) 1.73
Variation of enzyme activities and metabolite levels in 24 Arabidopsis accessions growing in carbon-limited conditions. Plant Physiol (2006) 1.72
Analysis of expressed sequence tags from Actinidia: applications of a cross species EST database for gene discovery in the areas of flavor, health, color and ripening. BMC Genomics (2008) 1.70
Quantitative analysis of food and feed samples with droplet digital PCR. PLoS One (2013) 1.69
Mercator: a fast and simple web server for genome scale functional annotation of plant sequence data. Plant Cell Environ (2013) 1.69
Genome-wide transcriptional analysis of grapevine berry ripening reveals a set of genes similarly modulated during three seasons and the occurrence of an oxidative burst at vèraison. BMC Genomics (2007) 1.67
Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa. Plant Biotechnol J (2011) 1.66
Rapid structural phenotyping of plant cell wall mutants by enzymatic oligosaccharide fingerprinting. Plant Physiol (2002) 1.65
Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato. Proc Natl Acad Sci U S A (2013) 1.63
Genome-wide association mapping of leaf metabolic profiles for dissecting complex traits in maize. Proc Natl Acad Sci U S A (2012) 1.61
Assembly of an interactive correlation network for the Arabidopsis genome using a novel heuristic clustering algorithm. Plant Physiol (2009) 1.61
Recommendations for reporting metabolite data. Plant Cell (2011) 1.61
A grape ASR protein involved in sugar and abscisic acid signaling. Plant Cell (2003) 1.58
Detection of genetically modified organisms--closing the gaps. Nat Biotechnol (2009) 1.57
The SEQanswers wiki: a wiki database of tools for high-throughput sequencing analysis. Nucleic Acids Res (2011) 1.56
From elicitins to lipid-transfer proteins: a new insight in cell signalling involved in plant defence mechanisms. Trends Plant Sci (2002) 1.56
The role of raffinose in the cold acclimation response of Arabidopsis thaliana. FEBS Lett (2004) 1.52
Arabidopsis and primary photosynthetic metabolism - more than the icing on the cake. Plant J (2010) 1.52
Conversion of MapMan to allow the analysis of transcript data from Solanaceous species: effects of genetic and environmental alterations in energy metabolism in the leaf. Plant Mol Biol (2006) 1.52
Systems biology of tomato fruit development: combined transcript, protein, and metabolite analysis of tomato transcription factor (nor, rin) and ethylene receptor (Nr) mutants reveals novel regulatory interactions. Plant Physiol (2011) 1.51
Low levels of ribosomal RNA partly account for the very high photosynthetic phosphorus-use efficiency of Proteaceae species. Plant Cell Environ (2014) 1.51
Source-to-sink transport of sugar and regulation by environmental factors. Front Plant Sci (2013) 1.51
Exhaustion of the chloroplast protein synthesis capacity by massive expression of a highly stable protein antibiotic. Plant J (2008) 1.50
Arabidopsis plants acclimate to water deficit at low cost through changes of carbon usage: an integrated perspective using growth, metabolite, enzyme, and gene expression analysis. Plant Physiol (2010) 1.46
Mapping metabolic and transcript temporal switches during germination in rice highlights specific transcription factors and the role of RNA instability in the germination process. Plant Physiol (2008) 1.45
Increased leaf size: different means to an end. Plant Physiol (2010) 1.45
A subtilisin-like serine protease essential for mucilage release from Arabidopsis seed coats. Plant J (2008) 1.44
Network analysis of enzyme activities and metabolite levels and their relationship to biomass in a large panel of Arabidopsis accessions. Plant Cell (2010) 1.41
Malate plays a crucial role in starch metabolism, ripening, and soluble solid content of tomato fruit and affects postharvest softening. Plant Cell (2011) 1.40
Next generation of elevated [CO2] experiments with crops: a critical investment for feeding the future world. Plant Cell Environ (2008) 1.39
Trehalose metabolism in plants. Plant J (2014) 1.39
Systems-based analysis of Arabidopsis leaf growth reveals adaptation to water deficit. Mol Syst Biol (2012) 1.38
The inositol oxygenase gene family of Arabidopsis is involved in the biosynthesis of nucleotide sugar precursors for cell-wall matrix polysaccharides. Planta (2005) 1.37
Circadian control of root elongation and C partitioning in Arabidopsis thaliana. Plant Cell Environ (2011) 1.37
Metabolic fluxes in an illuminated Arabidopsis rosette. Plant Cell (2013) 1.36
Regulation of secondary metabolism by the carbon-nitrogen status in tobacco: nitrate inhibits large sectors of phenylpropanoid metabolism. Plant J (2006) 1.35
Ripening and genotype control stilbene accumulation in healthy grapes. J Agric Food Chem (2008) 1.34
Algorithm-driven artifacts in median Polish summarization of microarray data. BMC Bioinformatics (2010) 1.33
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Metabolomics- and proteomics-assisted genome annotation and analysis of the draft metabolic network of Chlamydomonas reinhardtii. Genetics (2008) 1.31
Increased C availability at elevated carbon dioxide concentration improves N assimilation in a legume. Plant Cell Environ (2006) 1.31