Published in J Theor Biol on April 21, 2004
On the origin of biochemistry at an alkaline hydrothermal vent. Philos Trans R Soc Lond B Biol Sci (2007) 2.15
Spontaneous network formation among cooperative RNA replicators. Nature (2012) 1.73
Evolution before genes. Biol Direct (2012) 1.26
Required levels of catalysis for emergence of autocatalytic sets in models of chemical reaction systems. Int J Mol Sci (2011) 1.09
Cycles and the qualitative evolution of chemical systems. PLoS One (2012) 0.91
Autocatalytic sets in a partitioned biochemical network. J Syst Chem (2014) 0.86
Autocatalytic sets in E. coli metabolism. J Syst Chem (2015) 0.82
Growth and division in a dynamic protocell model. Life (Basel) (2014) 0.79
Serial transfer can aid the evolution of autocatalytic sets. J Syst Chem (2014) 0.77
Algorithms for detecting and analysing autocatalytic sets. Algorithms Mol Biol (2015) 0.77
Viability conditions for a compartmentalized protometabolic system: a semi-empirical approach. PLoS One (2012) 0.77
Computational strategies for a system-level understanding of metabolism. Metabolites (2014) 0.76
Autocatalytic sets and boundaries. J Syst Chem (2015) 0.75
Design principles of autocatalytic cycles constrain enzyme kinetics and force low substrate saturation at flux branch points. Elife (2017) 0.75
Spontaneous mirror symmetry breaking in heterocatalytically coupled enantioselective replicators. Chem Sci (2016) 0.75
Transferable Measurements of Heredity in Models of the Origins of Life. PLoS One (2015) 0.75
Autocatalytic Sets and RNA Secondary Structure. J Mol Evol (2017) 0.75
Neighbor-joining revealed. Mol Biol Evol (2006) 2.17
Terraces in phylogenetic tree space. Science (2011) 1.82
Hybrids in real time. Syst Biol (2006) 1.61
Acquisition of 1,000 eubacterial genes physiologically transformed a methanogen at the origin of Haloarchaea. Proc Natl Acad Sci U S A (2012) 1.60
Optimizing phylogenetic diversity under constraints. J Theor Biol (2006) 1.31
Phylogenomics with incomplete taxon coverage: the limits to inference. BMC Evol Biol (2010) 1.30
Phylogenetic trees based on gene content. Bioinformatics (2004) 1.27
Networks: expanding evolutionary thinking. Trends Genet (2013) 1.22
Phylogenetic mixtures on a single tree can mimic a tree of another topology. Syst Biol (2007) 1.11
'Lassoing' a phylogenetic tree I: basic properties, shellings, and covers. J Math Biol (2011) 1.09
Required levels of catalysis for emergence of autocatalytic sets in models of chemical reaction systems. Int J Mol Sci (2011) 1.09
Random biochemical networks: the probability of self-sustaining autocatalysis. J Theor Biol (2005) 1.08
Difficulties in testing for covarion-like properties of sequences under the confounding influence of changing proportions of variable sites. Mol Biol Evol (2008) 1.04
Supertree algorithms for ancestral divergence dates and nested taxa. Bioinformatics (2004) 1.03
The structure of autocatalytic sets: evolvability, enablement, and emergence. Acta Biotheor (2012) 1.01
A phase transition for a random cluster model on phylogenetic trees. Math Biosci (2004) 0.97
Branch lengths on birth-death trees and the expected loss of phylogenetic diversity. Syst Biol (2011) 0.97
Reconstructing pedigrees: a stochastic perspective. J Theor Biol (2007) 0.95
Maximizing phylogenetic diversity in biodiversity conservation: Greedy solutions to the Noah's Ark problem. Syst Biol (2006) 0.95
Mixed-up trees: the structure of phylogenetic mixtures. Bull Math Biol (2008) 0.94
Computing the distribution of a tree metric. IEEE/ACM Trans Comput Biol Bioinform (2009) 0.92
The influence of rate heterogeneity among sites on the time dependence of molecular rates. Mol Biol Evol (2012) 0.91
Stochastic properties of generalised Yule models, with biodiversity applications. J Math Biol (2008) 0.90
A tale of two processes. Syst Biol (2005) 0.90
More taxa are not necessarily better for the reconstruction of ancestral character states. Syst Biol (2008) 0.90
Distribution of phylogenetic diversity under random extinction. J Theor Biol (2007) 0.88
Autocatalytic sets and biological specificity. Bull Math Biol (2014) 0.86
Origins of life: Common ancestry put to the test. Nature (2010) 0.85
Sequence length bounds for resolving a deep phylogenetic divergence. J Theor Biol (2008) 0.84
Does random tree puzzle produce Yule-Harding trees in the many-taxon limit? Math Biosci (2013) 0.83
Predicting template-based catalysis rates in a simple catalytic reaction model. J Theor Biol (2011) 0.83
Closure operations in phylogenetics. Math Biosci (2006) 0.83
Clades, clans, and reciprocal monophyly under neutral evolutionary models. Theor Popul Biol (2011) 0.83
Distribution of branch lengths and phylogenetic diversity under homogeneous speciation models. J Theor Biol (2011) 0.82
Predicting the ancestral character changes in a tree is typically easier than predicting the root state. Syst Biol (2014) 0.81
On the impossibility of uniform priors on clades. Mol Phylogenet Evol (2005) 0.80
Unicyclic networks: compatibility and enumeration. IEEE/ACM Trans Comput Biol Bioinform (2006) 0.79
Estimating phylogenetic trees from pairwise likelihoods and posterior probabilities of substitution counts. J Theor Biol (2011) 0.78
The 'Butterfly effect' in Cayley graphs with applications to genomics. J Math Biol (2011) 0.77
Conditions for evolvability of autocatalytic sets: a formal example and analysis. Orig Life Evol Biosph (2014) 0.77
Inferring ancestral sequences in taxon-rich phylogenies. Math Biosci (2010) 0.77
Species, clusters and the 'Tree of life': a graph-theoretic perspective. J Theor Biol (2010) 0.76
Hide and seek: placing and finding an optimal tree for thousands of homoplasy-rich sequences. Mol Phylogenet Evol (2013) 0.76
The impact and interplay of long and short branches on phylogenetic information content. J Theor Biol (2012) 0.76
Distances that perfectly mislead. Syst Biol (2004) 0.75
Expected anomalies in the fossil record. Evol Bioinform Online (2008) 0.75
Estimating the relative order of speciation or coalescence events on a given phylogeny. Evol Bioinform Online (2007) 0.75
Quantifying the extent of lateral gene transfer required to Avert a 'genome of Eden'. Bull Math Biol (2010) 0.75
Shrinkage effect in ancestral maximum likelihood. IEEE/ACM Trans Comput Biol Bioinform (2009) 0.75
Comparing strategies to preserve evolutionary diversity. J Theor Biol (2010) 0.75
The standard lateral gene transfer model is statistically consistent for pectinate four-taxon trees. J Theor Biol (2013) 0.75
Special section: phylogenetics. IEEE/ACM Trans Comput Biol Bioinform (2009) 0.75
Modelling the unpredictability of future biodiversity in ecological networks. J Theor Biol (2010) 0.75
Refining phylogenetic trees given additional data: an algorithm based on parsimony. IEEE/ACM Trans Comput Biol Bioinform (2009) 0.75