Published in Nature on May 13, 2010
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Four new mitochondrial genomes and the increased stability of evolutionary trees of mammals from improved taxon sampling. Mol Biol Evol (2002) 1.30
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Widespread evolutionary conservation of alternatively spliced exons in Caenorhabditis. Mol Biol Evol (2007) 1.08
Random biochemical networks: the probability of self-sustaining autocatalysis. J Theor Biol (2005) 1.08
Large-scale intron conservation and order-of-magnitude variation in intron loss/gain rates in apicomplexan evolution. Genome Res (2006) 1.05
Difficulties in testing for covarion-like properties of sequences under the confounding influence of changing proportions of variable sites. Mol Biol Evol (2008) 1.04
Combined experimental and computational approach to identify non-protein-coding RNAs in the deep-branching eukaryote Giardia intestinalis. Nucleic Acids Res (2007) 1.03
Systematic error in seed plant phylogenomics. Genome Biol Evol (2011) 1.03
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Widespread intron loss suggests retrotransposon activity in ancient apicomplexans. Mol Biol Evol (2007) 1.02
Two new avian mitochondrial genomes (penguin and goose) and a summary of bird and reptile mitogenomic features. Gene (2003) 1.01
The structure of autocatalytic sets: evolvability, enablement, and emergence. Acta Biotheor (2012) 1.01
RNase MRP and the RNA processing cascade in the eukaryotic ancestor. BMC Evol Biol (2007) 1.01
Measuring fit of sequence data to phylogenetic model: gain of power using marginal tests. J Mol Evol (2009) 1.01
Bird evolution: testing the Metaves clade with six new mitochondrial genomes. BMC Evol Biol (2008) 1.01
Streptophyte algae and the origin of land plants revisited using heterogeneous models with three new algal chloroplast genomes. Mol Biol Evol (2013) 1.01
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A phase transition for a random cluster model on phylogenetic trees. Math Biosci (2004) 0.97
Branch lengths on birth-death trees and the expected loss of phylogenetic diversity. Syst Biol (2011) 0.97
A very high fraction of unique intron positions in the intron-rich diatom Thalassiosira pseudonana indicates widespread intron gain. Mol Biol Evol (2007) 0.97
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Smoke without fire: most reported cases of intron gain in nematodes instead reflect intron losses. Mol Biol Evol (2006) 0.96
Reconstructing pedigrees: a stochastic perspective. J Theor Biol (2007) 0.95
Maximizing phylogenetic diversity in biodiversity conservation: Greedy solutions to the Noah's Ark problem. Syst Biol (2006) 0.95
Using ancestral sequences to uncover potential gene homologues. Appl Bioinformatics (2003) 0.94
High throughput genome-wide survey of small RNAs from the parasitic protists Giardia intestinalis and Trichomonas vaginalis. Genome Biol Evol (2009) 0.94
Treeness triangles: visualizing the loss of phylogenetic signal. Mol Biol Evol (2007) 0.94
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The modern RNP world of eukaryotes. J Hered (2009) 0.92
Beyond phylogeny: pelecaniform and ciconiiform birds, and long-term niche stability. Mol Phylogenet Evol (2013) 0.92
Computing the distribution of a tree metric. IEEE/ACM Trans Comput Biol Bioinform (2009) 0.92
Very little intron gain in Entamoeba histolytica genes laterally transferred from prokaryotes. Mol Biol Evol (2006) 0.91
The influence of rate heterogeneity among sites on the time dependence of molecular rates. Mol Biol Evol (2012) 0.91
Index-free de novo assembly and deconvolution of mixed mitochondrial genomes. Genome Biol Evol (2010) 0.90
Stochastic properties of generalised Yule models, with biodiversity applications. J Math Biol (2008) 0.90
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A tale of two processes. Syst Biol (2005) 0.90
Evolutionary conservation of UTR intron boundaries in Cryptococcus. Mol Biol Evol (2007) 0.90
A bias in ML estimates of branch lengths in the presence of multiple signals. Mol Biol Evol (2007) 0.89
Intron length distributions and gene prediction. Nucleic Acids Res (2007) 0.89
Missing data and influential sites: choice of sites for phylogenetic analysis can be as important as taxon sampling and model choice. Genome Biol Evol (2013) 0.88
Distribution of phylogenetic diversity under random extinction. J Theor Biol (2007) 0.88
Computational identification of four spliceosomal snRNAs from the deep-branching eukaryote Giardia intestinalis. PLoS One (2008) 0.87
Autocatalytic sets and biological specificity. Bull Math Biol (2014) 0.86
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Sequence length bounds for resolving a deep phylogenetic divergence. J Theor Biol (2008) 0.84
Closure operations in phylogenetics. Math Biosci (2006) 0.83
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Predicting template-based catalysis rates in a simple catalytic reaction model. J Theor Biol (2011) 0.83
Does random tree puzzle produce Yule-Harding trees in the many-taxon limit? Math Biosci (2013) 0.83
Phylogenetic position of avian nocturnal and diurnal raptors. Genome Biol Evol (2014) 0.83
Clades, clans, and reciprocal monophyly under neutral evolutionary models. Theor Popul Biol (2011) 0.83
Distribution of branch lengths and phylogenetic diversity under homogeneous speciation models. J Theor Biol (2011) 0.82
Gaps: an elusive source of phylogenetic information. Syst Biol (2012) 0.82