Published in IEEE/ACM Trans Comput Biol Bioinform on July 31, 2009
Inferring phylogenies of evolving sequences without multiple sequence alignment. Sci Rep (2014) 0.94
Circumstances in which parsimony but not compatibility will be provably misleading. Syst Biol (2015) 0.89
L.U.St: a tool for approximated maximum likelihood supertree reconstruction. BMC Bioinformatics (2014) 0.83
Alignment-free microbial phylogenomics under scenarios of sequence divergence, genome rearrangement and lateral genetic transfer. Sci Rep (2016) 0.81
Horizontal gene flow from Eubacteria to Archaebacteria and what it means for our understanding of eukaryogenesis. Philos Trans R Soc Lond B Biol Sci (2015) 0.78
A Bayesian Supertree Model for Genome-Wide Species Tree Reconstruction. Syst Biol (2014) 0.78
Cophylogeny reconstruction via an approximate Bayesian computation. Syst Biol (2014) 0.77
Refining discordant gene trees. BMC Bioinformatics (2014) 0.76
Implementing and testing Bayesian and maximum-likelihood supertree methods in phylogenetics. R Soc Open Sci (2015) 0.75
Neighbor-joining revealed. Mol Biol Evol (2006) 2.17
Terraces in phylogenetic tree space. Science (2011) 1.82
Hybrids in real time. Syst Biol (2006) 1.61
Acquisition of 1,000 eubacterial genes physiologically transformed a methanogen at the origin of Haloarchaea. Proc Natl Acad Sci U S A (2012) 1.60
Optimizing phylogenetic diversity under constraints. J Theor Biol (2006) 1.31
Phylogenomics with incomplete taxon coverage: the limits to inference. BMC Evol Biol (2010) 1.30
Phylogenetic trees based on gene content. Bioinformatics (2004) 1.27
Detecting autocatalytic, self-sustaining sets in chemical reaction systems. J Theor Biol (2004) 1.24
Networks: expanding evolutionary thinking. Trends Genet (2013) 1.22
Phylogenetic mixtures on a single tree can mimic a tree of another topology. Syst Biol (2007) 1.11
'Lassoing' a phylogenetic tree I: basic properties, shellings, and covers. J Math Biol (2011) 1.09
Required levels of catalysis for emergence of autocatalytic sets in models of chemical reaction systems. Int J Mol Sci (2011) 1.09
Random biochemical networks: the probability of self-sustaining autocatalysis. J Theor Biol (2005) 1.08
Difficulties in testing for covarion-like properties of sequences under the confounding influence of changing proportions of variable sites. Mol Biol Evol (2008) 1.04
Supertree algorithms for ancestral divergence dates and nested taxa. Bioinformatics (2004) 1.03
The structure of autocatalytic sets: evolvability, enablement, and emergence. Acta Biotheor (2012) 1.01
A phase transition for a random cluster model on phylogenetic trees. Math Biosci (2004) 0.97
Branch lengths on birth-death trees and the expected loss of phylogenetic diversity. Syst Biol (2011) 0.97
Reconstructing pedigrees: a stochastic perspective. J Theor Biol (2007) 0.95
Maximizing phylogenetic diversity in biodiversity conservation: Greedy solutions to the Noah's Ark problem. Syst Biol (2006) 0.95
Mixed-up trees: the structure of phylogenetic mixtures. Bull Math Biol (2008) 0.94
The influence of rate heterogeneity among sites on the time dependence of molecular rates. Mol Biol Evol (2012) 0.91
Stochastic properties of generalised Yule models, with biodiversity applications. J Math Biol (2008) 0.90
More taxa are not necessarily better for the reconstruction of ancestral character states. Syst Biol (2008) 0.90
A tale of two processes. Syst Biol (2005) 0.90
Distribution of phylogenetic diversity under random extinction. J Theor Biol (2007) 0.88
Autocatalytic sets and biological specificity. Bull Math Biol (2014) 0.86
Origins of life: Common ancestry put to the test. Nature (2010) 0.85
Sequence length bounds for resolving a deep phylogenetic divergence. J Theor Biol (2008) 0.84
Closure operations in phylogenetics. Math Biosci (2006) 0.83
Does random tree puzzle produce Yule-Harding trees in the many-taxon limit? Math Biosci (2013) 0.83
Predicting template-based catalysis rates in a simple catalytic reaction model. J Theor Biol (2011) 0.83
Clades, clans, and reciprocal monophyly under neutral evolutionary models. Theor Popul Biol (2011) 0.83
Distribution of branch lengths and phylogenetic diversity under homogeneous speciation models. J Theor Biol (2011) 0.82
Predicting the ancestral character changes in a tree is typically easier than predicting the root state. Syst Biol (2014) 0.81
On the impossibility of uniform priors on clades. Mol Phylogenet Evol (2005) 0.80
Unicyclic networks: compatibility and enumeration. IEEE/ACM Trans Comput Biol Bioinform (2006) 0.79
Estimating phylogenetic trees from pairwise likelihoods and posterior probabilities of substitution counts. J Theor Biol (2011) 0.78
The 'Butterfly effect' in Cayley graphs with applications to genomics. J Math Biol (2011) 0.77
Conditions for evolvability of autocatalytic sets: a formal example and analysis. Orig Life Evol Biosph (2014) 0.77
Inferring ancestral sequences in taxon-rich phylogenies. Math Biosci (2010) 0.77
Hide and seek: placing and finding an optimal tree for thousands of homoplasy-rich sequences. Mol Phylogenet Evol (2013) 0.76
The impact and interplay of long and short branches on phylogenetic information content. J Theor Biol (2012) 0.76
Species, clusters and the 'Tree of life': a graph-theoretic perspective. J Theor Biol (2010) 0.76
Expected anomalies in the fossil record. Evol Bioinform Online (2008) 0.75
Distances that perfectly mislead. Syst Biol (2004) 0.75
Estimating the relative order of speciation or coalescence events on a given phylogeny. Evol Bioinform Online (2007) 0.75
Quantifying the extent of lateral gene transfer required to Avert a 'genome of Eden'. Bull Math Biol (2010) 0.75
Shrinkage effect in ancestral maximum likelihood. IEEE/ACM Trans Comput Biol Bioinform (2009) 0.75
Comparing strategies to preserve evolutionary diversity. J Theor Biol (2010) 0.75
The standard lateral gene transfer model is statistically consistent for pectinate four-taxon trees. J Theor Biol (2013) 0.75
Special section: phylogenetics. IEEE/ACM Trans Comput Biol Bioinform (2009) 0.75
Modelling the unpredictability of future biodiversity in ecological networks. J Theor Biol (2010) 0.75
Refining phylogenetic trees given additional data: an algorithm based on parsimony. IEEE/ACM Trans Comput Biol Bioinform (2009) 0.75