Published in Nat Biotechnol on April 11, 2004
The repetitive DNA elements called CRISPRs and their associated genes: evidence of horizontal transfer among prokaryotes. J Mol Evol (2006) 5.37
Major structural differences and novel potential virulence mechanisms from the genomes of multiple campylobacter species. PLoS Biol (2005) 5.22
A census of membrane-bound and intracellular signal transduction proteins in bacteria: bacterial IQ, extroverts and introverts. BMC Microbiol (2005) 3.38
Evolution of sensory complexity recorded in a myxobacterial genome. Proc Natl Acad Sci U S A (2006) 3.35
The psychrophilic lifestyle as revealed by the genome sequence of Colwellia psychrerythraea 34H through genomic and proteomic analyses. Proc Natl Acad Sci U S A (2005) 3.10
Respiration of metal (hydr)oxides by Shewanella and Geobacter: a key role for multihaem c-type cytochromes. Mol Microbiol (2007) 2.74
Metabolic modeling of a mutualistic microbial community. Mol Syst Biol (2007) 2.40
Exopolysaccharide-associated protein sorting in environmental organisms: the PEP-CTERM/EpsH system. Application of a novel phylogenetic profiling heuristic. BMC Biol (2006) 2.35
The genome of Syntrophus aciditrophicus: life at the thermodynamic limit of microbial growth. Proc Natl Acad Sci U S A (2007) 2.17
Correlation of mRNA expression and protein abundance affected by multiple sequence features related to translational efficiency in Desulfovibrio vulgaris: a quantitative analysis. Genetics (2006) 1.96
Evidence for two flagellar stators and their role in the motility of Pseudomonas aeruginosa. J Bacteriol (2005) 1.86
A comparative genomic analysis of energy metabolism in sulfate reducing bacteria and archaea. Front Microbiol (2011) 1.78
Reconstruction of regulatory and metabolic pathways in metal-reducing delta-proteobacteria. Genome Biol (2004) 1.78
Novel genes of the dsr gene cluster and evidence for close interaction of Dsr proteins during sulfur oxidation in the phototrophic sulfur bacterium Allochromatium vinosum. J Bacteriol (2005) 1.71
Salt stress in Desulfovibrio vulgaris Hildenborough: an integrated genomics approach. J Bacteriol (2006) 1.68
Physiological and gene expression analysis of inhibition of Desulfovibrio vulgaris hildenborough by nitrite. J Bacteriol (2004) 1.61
Adaptations to submarine hydrothermal environments exemplified by the genome of Nautilia profundicola. PLoS Genet (2009) 1.48
Global analysis of heat shock response in Desulfovibrio vulgaris Hildenborough. J Bacteriol (2006) 1.46
Whole genome sequence of Desulfovibrio magneticus strain RS-1 revealed common gene clusters in magnetotactic bacteria. Genome Res (2009) 1.41
Pathway confirmation and flux analysis of central metabolic pathways in Desulfovibrio vulgaris hildenborough using gas chromatography-mass spectrometry and Fourier transform-ion cyclotron resonance mass spectrometry. J Bacteriol (2006) 1.40
The electron transfer system of syntrophically grown Desulfovibrio vulgaris. J Bacteriol (2009) 1.35
Energetic consequences of nitrite stress in Desulfovibrio vulgaris Hildenborough, inferred from global transcriptional analysis. Appl Environ Microbiol (2006) 1.35
Metabolic flexibility of sulfate-reducing bacteria. Front Microbiol (2011) 1.32
Analysis of a ferric uptake regulator (Fur) mutant of Desulfovibrio vulgaris Hildenborough. Appl Environ Microbiol (2007) 1.31
In situ expression of nifD in Geobacteraceae in subsurface sediments. Appl Environ Microbiol (2004) 1.29
Influence of sulfate reduction rates on the Phanerozoic sulfur isotope record. Proc Natl Acad Sci U S A (2013) 1.28
Complete and draft genome sequences of six members of the Aquificales. J Bacteriol (2009) 1.27
Re-citrate synthase from Clostridium kluyveri is phylogenetically related to homocitrate synthase and isopropylmalate synthase rather than to Si-citrate synthase. J Bacteriol (2007) 1.26
Effect of the deletion of qmoABC and the promoter-distal gene encoding a hypothetical protein on sulfate reduction in Desulfovibrio vulgaris Hildenborough. Appl Environ Microbiol (2010) 1.26
X-ray structure of the membrane-bound cytochrome c quinol dehydrogenase NrfH reveals novel haem coordination. EMBO J (2006) 1.24
Function of periplasmic hydrogenases in the sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough. J Bacteriol (2007) 1.18
Cell-wide responses to low-oxygen exposure in Desulfovibrio vulgaris Hildenborough. J Bacteriol (2007) 1.14
Temporal transcriptomic analysis as Desulfovibrio vulgaris Hildenborough transitions into stationary phase during electron donor depletion. Appl Environ Microbiol (2006) 1.14
Genome sequence of Desulfobacterium autotrophicum HRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide. Environ Microbiol (2009) 1.14
Genetics and molecular biology of the electron flow for sulfate respiration in desulfovibrio. Front Microbiol (2011) 1.13
Variation among species in proteomic sulphur content is related to environmental conditions. Proc Biol Sci (2006) 1.11
Response of Desulfovibrio vulgaris to alkaline stress. J Bacteriol (2007) 1.11
Quantification of sulfate-reducing bacteria in industrial wastewater, by real-time polymerase chain reaction (PCR) using dsrA and apsA genes. Microb Ecol (2007) 1.10
Hydrogen metabolism in Shewanella oneidensis MR-1. Appl Environ Microbiol (2006) 1.10
Structure of a CRISPR-associated protein Cas2 from Desulfovibrio vulgaris. Acta Crystallogr Sect F Struct Biol Cryst Commun (2010) 1.10
Global transcriptional, physiological, and metabolite analyses of the responses of Desulfovibrio vulgaris hildenborough to salt adaptation. Appl Environ Microbiol (2009) 1.10
Integrated analysis of transcriptomic and proteomic data. Curr Genomics (2013) 1.09
Syntrophic growth on formate: a new microbial niche in anoxic environments. Appl Environ Microbiol (2008) 1.09
Distinct physiological roles of the three [NiFe]-hydrogenase orthologs in the hyperthermophilic archaeon Thermococcus kodakarensis. J Bacteriol (2011) 1.08
Clustered genes related to sulfate respiration in uncultured prokaryotes support the theory of their concomitant horizontal transfer. J Bacteriol (2005) 1.05
A molybdopterin oxidoreductase is involved in H2 oxidation in Desulfovibrio desulfuricans G20. J Bacteriol (2009) 1.02
Establishment and metabolic analysis of a model microbial community for understanding trophic and electron accepting interactions of subsurface anaerobic environments. BMC Microbiol (2010) 1.01
Complete genome sequence of Desulfotomaculum acetoxidans type strain (5575). Stand Genomic Sci (2009) 1.00
Selenium is involved in regulation of periplasmic hydrogenase gene expression in Desulfovibrio vulgaris Hildenborough. J Bacteriol (2006) 0.99
Rubredoxin:oxygen oxidoreductase enhances survival of Desulfovibrio vulgaris hildenborough under microaerophilic conditions. J Bacteriol (2006) 0.99
Hydrogenases in Desulfovibrio vulgaris Hildenborough: structural and physiologic characterisation of the membrane-bound [NiFeSe] hydrogenase. J Biol Inorg Chem (2005) 0.98
Distinguishing features of delta-proteobacterial genomes. Proc Natl Acad Sci U S A (2006) 0.98
The first genomic and proteomic characterization of a deep-sea sulfate reducer: insights into the piezophilic lifestyle of Desulfovibrio piezophilus. PLoS One (2013) 0.98
The Qrc membrane complex, related to the alternative complex III, is a menaquinone reductase involved in sulfate respiration. J Biol Chem (2010) 0.96
Evidence-based annotation of transcripts and proteins in the sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough. J Bacteriol (2011) 0.96
Helicobacter pylori apo-Fur regulation appears unconserved across species. J Microbiol (2010) 0.94
Functional responses of methanogenic archaea to syntrophic growth. ISME J (2012) 0.92
Sustainable growth of Dehalococcoides mccartyi 195 by corrinoid salvaging and remodeling in defined lactate-fermenting consortia. Appl Environ Microbiol (2014) 0.91
Systematic mapping of two component response regulators to gene targets in a model sulfate reducing bacterium. Genome Biol (2011) 0.91
Tackling the minority: sulfate-reducing bacteria in an archaea-dominated subsurface biofilm. ISME J (2012) 0.91
The genetic basis of energy conservation in the sulfate-reducing bacterium Desulfovibrio alaskensis G20. Front Microbiol (2014) 0.91
Heme biosynthesis in Methanosarcina barkeri via a pathway involving two methylation reactions. J Bacteriol (2006) 0.90
Genome sequence of the model sulfate reducer Desulfovibrio gigas: a comparative analysis within the Desulfovibrio genus. Microbiologyopen (2014) 0.89
Rapid transposon liquid enrichment sequencing (TnLE-seq) for gene fitness evaluation in underdeveloped bacterial systems. Appl Environ Microbiol (2013) 0.89
Environment-dependent distribution of the sediment nifH-harboring microbiota in the Northern South China Sea. Appl Environ Microbiol (2012) 0.88
Temporal bacterial diversity associated with metal-contaminated river sediments. Ecotoxicology (2009) 0.88
Integrative analysis of transcriptomic and proteomic data of Desulfovibrio vulgaris: a non-linear model to predict abundance of undetected proteins. Bioinformatics (2009) 0.87
Mapping of a YscY binding domain within the LcrH chaperone that is required for regulation of Yersinia type III secretion. J Bacteriol (2005) 0.87
Gene expression by the sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough grown on an iron electrode under cathodic protection conditions. Appl Environ Microbiol (2008) 0.86
Transcriptomic and proteomic analyses of Desulfovibrio vulgaris biofilms: carbon and energy flow contribute to the distinct biofilm growth state. BMC Genomics (2012) 0.86
The Methylococcus capsulatus (Bath) secreted protein, MopE*, binds both reduced and oxidized copper. PLoS One (2012) 0.86
Fractionation of sulfur isotopes by Desulfovibrio vulgaris mutants lacking hydrogenases or type I tetraheme cytochrome c 3. Front Microbiol (2013) 0.86
The anaerobe-specific orange protein complex of Desulfovibrio vulgaris hildenborough is encoded by two divergent operons coregulated by σ54 and a cognate transcriptional regulator. J Bacteriol (2011) 0.85
New model for electron flow for sulfate reduction in Desulfovibrio alaskensis G20. Appl Environ Microbiol (2013) 0.85
Genomic and Experimental Evidence Suggests that Verrucomicrobium spinosum Interacts with Eukaryotes. Front Microbiol (2011) 0.85
Transcriptomics reveal several gene expression patterns in the piezophile Desulfovibrio hydrothermalis in response to hydrostatic pressure. PLoS One (2014) 0.85
Towards a rigorous network of protein-protein interactions of the model sulfate reducer Desulfovibrio vulgaris Hildenborough. PLoS One (2011) 0.85
Preferential reduction of the thermodynamically less favorable electron acceptor, sulfate, by a nitrate-reducing strain of the sulfate-reducing bacterium Desulfovibrio desulfuricans 27774. J Bacteriol (2008) 0.84
An intertwined evolutionary history of methanogenic archaea and sulfate reduction. PLoS One (2012) 0.84
Expression profiling of hypothetical genes in Desulfovibrio vulgaris leads to improved functional annotation. Nucleic Acids Res (2009) 0.84
Molybdenum and tungsten-dependent formate dehydrogenases. J Biol Inorg Chem (2014) 0.83
Characterization of the RnfB and RnfG subunits of the Rnf complex from the archaeon Methanosarcina acetivorans. PLoS One (2014) 0.83
Complete genome sequence of Syntrophobacter fumaroxidans strain (MPOB(T)). Stand Genomic Sci (2012) 0.83
Functional characterization of Crp/Fnr-type global transcriptional regulators in Desulfovibrio vulgaris Hildenborough. Appl Environ Microbiol (2011) 0.83
Tungsten and molybdenum regulation of formate dehydrogenase expression in Desulfovibrio vulgaris Hildenborough. J Bacteriol (2011) 0.83
Effects of molybdate and tungstate on expression levels and biochemical characteristics of formate dehydrogenases produced by Desulfovibrio alaskensis NCIMB 13491. J Bacteriol (2011) 0.83
Study of the thiol/disulfide redox systems of the anaerobe Desulfovibrio vulgaris points out pyruvate:ferredoxin oxidoreductase as a new target for thioredoxin 1. J Biol Chem (2011) 0.83
Hydrocarbon-degrading bacteria: the oil-spill clean-up crew. Microb Biotechnol (2009) 0.82
Carbon monoxide as an electron donor for the biological reduction of sulphate. Int J Microbiol (2010) 0.82
The role of bacterial antizyme: From an inhibitory protein to AtoC transcriptional regulator. Microb Cell Fact (2004) 0.82
Genetic basis for nitrate resistance in Desulfovibrio strains. Front Microbiol (2014) 0.82
Phylogenomic analysis and predicted physiological role of the proton-translocating NADH:quinone oxidoreductase (complex I) across bacteria. MBio (2015) 0.81
Role of RelGsu in stress response and Fe(III) reduction in Geobacter sulfurreducens. J Bacteriol (2006) 0.81
Ferredoxin:thioredoxin reductase (FTR) links the regulation of oxygenic photosynthesis to deeply rooted bacteria. Planta (2012) 0.80
High-throughput isolation and characterization of untagged membrane protein complexes: outer membrane complexes of Desulfovibrio vulgaris. J Proteome Res (2012) 0.80
Genome Sequence of the Sulfate-Reducing Thermophilic Bacterium Thermodesulfovibrio yellowstonii Strain DSM 11347T (Phylum Nitrospirae). Genome Announc (2015) 0.80
Two-component signal transduction systems of Desulfovibrio vulgaris: structural and phylogenetic analysis and deduction of putative cognate pairs. J Mol Evol (2006) 0.80
The mechanism of formate oxidation by metal-dependent formate dehydrogenases. J Biol Inorg Chem (2011) 0.80
Electron transfer between periplasmic formate dehydrogenase and cytochromes c in Desulfovibrio desulfuricans ATCC 27774. J Biol Inorg Chem (2012) 0.80
Proton thrusters: overview of the structural and functional features of soluble tetrahaem cytochromes c3. J Biol Inorg Chem (2006) 0.80
Environmental genome shotgun sequencing of the Sargasso Sea. Science (2004) 45.23
The diploid genome sequence of an individual human. PLoS Biol (2007) 44.80
Genome sequence of the human malaria parasite Plasmodium falciparum. Nature (2002) 37.89
The minimum information about a genome sequence (MIGS) specification. Nat Biotechnol (2008) 31.04
Metagenomic analysis of the human distal gut microbiome. Science (2006) 29.76
Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature (2004) 24.40
The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific. PLoS Biol (2007) 23.58
The genome sequence of the malaria mosquito Anopheles gambiae. Science (2002) 20.36
Toward an online repository of Standard Operating Procedures (SOPs) for (meta)genomic annotation. OMICS (2008) 18.69
InterPro, progress and status in 2005. Nucleic Acids Res (2005) 17.53
Evolution and classification of the CRISPR-Cas systems. Nat Rev Microbiol (2011) 17.11
A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea. Nature (2009) 15.06
Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome". Proc Natl Acad Sci U S A (2005) 14.59
Timing of initiation of antiretroviral therapy in AIDS-free HIV-1-infected patients: a collaborative analysis of 18 HIV cohort studies. Lancet (2009) 14.01
The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families. PLoS Biol (2007) 13.99
Large-scale sequencing of human influenza reveals the dynamic nature of viral genome evolution. Nature (2005) 11.99
A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes. PLoS Comput Biol (2005) 11.82
The genome of the African trypanosome Trypanosoma brucei. Science (2005) 11.48
The Chlamydomonas genome reveals the evolution of key animal and plant functions. Science (2007) 11.15
EcoCyc: a comprehensive database resource for Escherichia coli. Nucleic Acids Res (2005) 11.01
The EcoCyc Database. Nucleic Acids Res (2002) 10.42
The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria. Nature (2003) 10.38
Comparative genome sequencing for discovery of novel polymorphisms in Bacillus anthracis. Science (2002) 9.83
Genome sequence of Aedes aegypti, a major arbovirus vector. Science (2007) 9.19
An integrated pipeline for de novo assembly of microbial genomes. PLoS One (2012) 8.97
Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii. Nature (2002) 8.92
TIGRFAMs and Genome Properties: tools for the assignment of molecular function and biological process in prokaryotic genomes. Nucleic Acids Res (2006) 8.89
Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus. Nature (2005) 8.55
Insights into the phylogeny and coding potential of microbial dark matter. Nature (2013) 8.55
A catalog of reference genomes from the human microbiome. Science (2010) 8.10
Identification of a conserved bacterial protein secretion system in Vibrio cholerae using the Dictyostelium host model system. Proc Natl Acad Sci U S A (2006) 7.99
Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome overrun by mobile genetic elements. PLoS Biol (2004) 7.95
Genetic analysis of a high-level vancomycin-resistant isolate of Staphylococcus aureus. Science (2003) 7.73
The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease. Science (2005) 7.61
A Sanger/pyrosequencing hybrid approach for the generation of high-quality draft assemblies of marine microbial genomes. Proc Natl Acad Sci U S A (2006) 7.17
EcoCyc: a comprehensive view of Escherichia coli biology. Nucleic Acids Res (2008) 7.05
Genome sequence of the dissimilatory metal ion-reducing bacterium Shewanella oneidensis. Nat Biotechnol (2002) 6.96