Published in Proc Natl Acad Sci U S A on April 15, 2004
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Improving tandem mass spectrum identification using peptide retention time prediction across diverse chromatography conditions. Anal Chem (2007) 1.19
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Detecting cross-linked peptides by searching against a database of cross-linked peptide pairs. J Proteome Res (2010) 1.09
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Protein backbone angle prediction with machine learning approaches. Bioinformatics (2004) 1.04
On using samples of known protein content to assess the statistical calibration of scores assigned to peptide-spectrum matches in shotgun proteomics. J Proteome Res (2011) 1.03
Exploratory analysis of genomic segmentations with Segtools. BMC Bioinformatics (2011) 1.02
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Assessing phylogenetic motif models for predicting transcription factor binding sites. Bioinformatics (2009) 0.95
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A thermodynamic approach to PCR primer design. Nucleic Acids Res (2009) 0.94
RANKPROP: a web server for protein remote homology detection. Bioinformatics (2008) 0.90
Motif-based protein ranking by network propagation. Bioinformatics (2005) 0.90
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Multiple functional categories of proteins identified in an in vitro cellular ubiquitin affinity extract using shotgun peptide sequencing. J Proteome Res (2003) 0.87
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A cross-validation scheme for machine learning algorithms in shotgun proteomics. BMC Bioinformatics (2012) 0.85
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Combining classifiers for improved classification of proteins from sequence or structure. BMC Bioinformatics (2008) 0.83
Protein family classification using sparse markov transducers. J Comput Biol (2003) 0.82
Detecting remote evolutionary relationships among proteins by large-scale semantic embedding. PLoS Comput Biol (2011) 0.82
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