Published in Genome Res on December 01, 2003
Computational definition of sequence motifs governing constitutive exon splicing. Genes Dev (2004) 4.59
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A machine learning strategy to identify candidate binding sites in human protein-coding sequence. BMC Bioinformatics (2006) 1.08
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Discovering weighted patterns in intron sequences using self-adaptive harmony search and back-propagation algorithms. ScientificWorldJournal (2013) 0.75
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Support vector machine prediction of signal peptide cleavage site using a new class of kernels for strings. Pac Symp Biocomput (2002) 0.97
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CSF-1R inhibition alters macrophage polarization and blocks glioma progression. Nat Med (2013) 5.04
Computational definition of sequence motifs governing constitutive exon splicing. Genes Dev (2004) 4.59
Transfection of small RNAs globally perturbs gene regulation by endogenous microRNAs. Nat Biotechnol (2009) 3.66
Target mRNA abundance dilutes microRNA and siRNA activity. Mol Syst Biol (2010) 3.37
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Genome-wide RNA-mediated interference screen identifies miR-19 targets in Notch-induced T-cell acute lymphoblastic leukaemia. Nat Cell Biol (2010) 2.40
Exon inclusion is dependent on predictable exonic splicing enhancers. Mol Cell Biol (2005) 2.02
A cooperative microRNA-tumor suppressor gene network in acute T-cell lymphoblastic leukemia (T-ALL). Nat Genet (2011) 1.99
Comparison of multiple vertebrate genomes reveals the birth and evolution of human exons. Proc Natl Acad Sci U S A (2006) 1.97
Dynamic regulation of alternative splicing by silencers that modulate 5' splice site competition. Cell (2008) 1.91
Ubiquitously transcribed genes use alternative polyadenylation to achieve tissue-specific expression. Genes Dev (2013) 1.74
Protein ranking: from local to global structure in the protein similarity network. Proc Natl Acad Sci U S A (2004) 1.67
Dichotomous splicing signals in exon flanks. Genome Res (2005) 1.42
Gene amplification and vector engineering to achieve rapid and high-level therapeutic protein production using the Dhfr-based CHO cell selection system. Biotechnol Adv (2010) 1.36
Inferring transcriptional and microRNA-mediated regulatory programs in glioblastoma. Mol Syst Biol (2012) 1.36
Quantitative evaluation of all hexamers as exonic splicing elements. Genome Res (2011) 1.32
Computational and experimental identification of mirtrons in Drosophila melanogaster and Caenorhabditis elegans. Genome Res (2010) 1.31
Positive selection acting on splicing motifs reflects compensatory evolution. Genome Res (2008) 1.18
Computational searches for splicing signals. Methods (2005) 1.15
The effect of nonsense codons on splicing: a genomic analysis. RNA (2003) 1.15
Protein backbone angle prediction with machine learning approaches. Bioinformatics (2004) 1.04
Splicing of designer exons reveals unexpected complexity in pre-mRNA splicing. RNA (2009) 1.04
Cooperative control of tumor suppressor genes by a network of oncogenic microRNAs. Cell Cycle (2011) 0.99
Intronic motif pairs cooperate across exons to promote pre-mRNA splicing. Genome Biol (2010) 0.94
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Global profiling of stimulus-induced polyadenylation in cells using a poly(A) trap. Nat Chem Biol (2013) 0.87
Context-dependent splicing regulation: exon definition, co-occurring motif pairs and tissue specificity. RNA Biol (2011) 0.85
Combining classifiers for improved classification of proteins from sequence or structure. BMC Bioinformatics (2008) 0.83
The isolation of CHO cells with a site conferring a high and reproducible transgene amplification rate. J Biotechnol (2013) 0.81
Latent splice sites and stop codons revisited. RNA (2004) 0.78
Effects of genomic context and chromatin structure on transcription-coupled and global genomic repair in mammalian cells. Nucleic Acids Res (2003) 0.78
Small sets of interacting proteins suggest functional linkage mechanisms via Bayesian analogical reasoning. Bioinformatics (2011) 0.75
Splicing by cell type. Nat Biotechnol (2010) 0.75