Published in Biochemistry on May 11, 2004
Analyses of the effects of all ubiquitin point mutants on yeast growth rate. J Mol Biol (2013) 1.59
Accurate structural correlations from maximum likelihood superpositions. PLoS Comput Biol (2008) 1.34
Differences in the folding transition state of ubiquitin indicated by phi and psi analyses. Proc Natl Acad Sci U S A (2004) 1.30
BPPred: a Web-based computational tool for predicting biophysical parameters of proteins. Protein Sci (2006) 1.14
A residue-specific shift in stability and amyloidogenicity of antibody variable domains. J Biol Chem (2014) 0.78
New insights into the interdependence between amino acid stereochemistry and protein structure. Biophys J (2013) 0.77
Structural basis of HP1/PXVXL motif peptide interactions and HP1 localisation to heterochromatin. EMBO J (2004) 2.79
Regulation of Hsp90 ATPase activity by the co-chaperone Cdc37p/p50cdc37. J Biol Chem (2002) 2.32
Self-assembling cages from coiled-coil peptide modules. Science (2013) 2.24
PDBe: Protein Data Bank in Europe. Nucleic Acids Res (2013) 2.16
n-->pi* interactions in proteins. Nat Chem Biol (2010) 2.02
Stimulation of the weak ATPase activity of human hsp90 by a client protein. J Mol Biol (2002) 1.98
Protein folding: defining a "standard" set of experimental conditions and a preliminary kinetic data set of two-state proteins. Protein Sci (2005) 1.91
PDBe: Protein Data Bank in Europe. Nucleic Acids Res (2010) 1.88
The co-chaperone p23 arrests the Hsp90 ATPase cycle to trap client proteins. J Mol Biol (2005) 1.74
The dimerization of an alpha/beta-knotted protein is essential for structure and function. Structure (2007) 1.69
Rational design and application of responsive alpha-helical peptide hydrogels. Nat Mater (2009) 1.63
Folding studies on a knotted protein. J Mol Biol (2005) 1.62
A recurring theme in protein engineering: the design, stability and folding of repeat proteins. Curr Opin Struct Biol (2005) 1.58
Independent ATPase activity of Hsp90 subunits creates a flexible assembly platform. J Mol Biol (2004) 1.55
Probing nature's knots: the folding pathway of a knotted homodimeric protein. J Mol Biol (2006) 1.52
Glycosyl transferases in family 61 mediate arabinofuranosyl transfer onto xylan in grasses. Proc Natl Acad Sci U S A (2012) 1.44
The folding and design of repeat proteins: reaching a consensus. Curr Opin Struct Biol (2003) 1.43
A comparison of the folding of two knotted proteins: YbeA and YibK. J Mol Biol (2006) 1.41
Stable intermediate states and high energy barriers in the unfolding of GFP. J Mol Biol (2007) 1.40
Ubiquitin chain conformation regulates recognition and activity of interacting proteins. Nature (2012) 1.39
A periodic table of coiled-coil protein structures. J Mol Biol (2008) 1.39
Peptide and protein building blocks for synthetic biology: from programming biomolecules to self-organized biomolecular systems. ACS Chem Biol (2008) 1.36
CC+: a relational database of coiled-coil structures. Nucleic Acids Res (2008) 1.34
Engineering nanoscale order into a designed protein fiber. Proc Natl Acad Sci U S A (2007) 1.31
Engineering the morphology of a self-assembling protein fibre. Nat Mater (2003) 1.31
The evolution and structure prediction of coiled coils across all genomes. J Mol Biol (2010) 1.30
Ubiquitin folds through a highly polarized transition state. Protein Eng Des Sel (2005) 1.30
A de novo peptide hexamer with a mutable channel. Nat Chem Biol (2011) 1.30
Exploring knotting mechanisms in protein folding. Proc Natl Acad Sci U S A (2008) 1.28
Local and long-range stability in tandemly arrayed tetratricopeptide repeats. Proc Natl Acad Sci U S A (2005) 1.28
Preferred side-chain constellations at antiparallel coiled-coil interfaces. Proc Natl Acad Sci U S A (2008) 1.26
Biochemical and structural studies of the interaction of Cdc37 with Hsp90. J Mol Biol (2004) 1.25
Extended knobs-into-holes packing in classical and complex coiled-coil assemblies. J Struct Biol (2003) 1.24
Dual role of Rac in the assembly of NADPH oxidase, tethering to the membrane and activation of p67phox: a study based on mutagenesis of p67phox-Rac1 chimeras. J Biol Chem (2004) 1.24
Experimental detection of knotted conformations in denatured proteins. Proc Natl Acad Sci U S A (2010) 1.22
Structural insights into quinolone antibiotic resistance mediated by pentapeptide repeat proteins: conserved surface loops direct the activity of a Qnr protein from a gram-negative bacterium. Nucleic Acids Res (2011) 1.18
Conformational dynamics of the molecular chaperone Hsp90 in complexes with a co-chaperone and anticancer drugs. J Mol Biol (2007) 1.17
Knot formation in newly translated proteins is spontaneous and accelerated by chaperonins. Nat Chem Biol (2011) 1.15
Knotted fusion proteins reveal unexpected possibilities in protein folding. Mol Cell (2008) 1.15
Synthetic biology through biomolecular design and engineering. Curr Opin Struct Biol (2008) 1.10
ZiCo: a peptide designed to switch folded state upon binding zinc. J Am Chem Soc (2005) 1.10
De novo designed peptides for biological applications. Chem Soc Rev (2011) 1.09
The pattern of xylan acetylation suggests xylan may interact with cellulose microfibrils as a twofold helical screw in the secondary plant cell wall of Arabidopsis thaliana. Plant J (2014) 1.09
Kinking the coiled coil--negatively charged residues at the coiled-coil interface. J Mol Biol (2006) 1.08
Heterogeneity and dynamics in the assembly of the heat shock protein 90 chaperone complexes. Proc Natl Acad Sci U S A (2011) 1.08
A coiled-coil motif that sequesters ions to the hydrophobic core. Proc Natl Acad Sci U S A (2009) 1.07
The interaction of HMGB1 and linker histones occurs through their acidic and basic tails. J Mol Biol (2008) 1.07
Is an intermediate state populated on the folding pathway of ubiquitin? FEBS Lett (2004) 1.06
Destabilised mutants of ubiquitin gain equal stability in crowded solutions. Biophys Chem (2007) 1.05
The folding, stability and conformational dynamics of beta-barrel fluorescent proteins. Chem Soc Rev (2009) 1.05
Prediction and analysis of higher-order coiled-coils: insights from proteins of the extracellular matrix, tenascins and thrombospondins. Int J Biochem Cell Biol (2013) 1.03
H1 and HMGB1: modulators of chromatin structure. Biochem Soc Trans (2012) 1.02
Mapping of functional domains in the p22(phox) subunit of flavocytochrome b(559) participating in the assembly of the NADPH oxidase complex by "peptide walking". J Biol Chem (2001) 1.00
A basis set of de novo coiled-coil peptide oligomers for rational protein design and synthetic biology. ACS Synth Biol (2012) 1.00
Mapping intramolecular interactions between domains in HMGB1 using a tail-truncation approach. J Mol Biol (2007) 1.00
HMGB1-facilitated p53 DNA binding occurs via HMG-Box/p53 transactivation domain interaction, regulated by the acidic tail. Structure (2012) 0.99
A designed system for assessing how sequence affects alpha to beta conformational transitions in proteins. J Biol Chem (2001) 0.99
The folding pathway of ubiquitin from all-atom molecular dynamics simulations. Biophys Chem (2004) 0.99
The effect of Parkinson's-disease-associated mutations on the deubiquitinating enzyme UCH-L1. J Mol Biol (2011) 0.99
MagicWand: a single, designed peptide that assembles to stable, ordered alpha-helical fibers. Biochemistry (2008) 0.98
Activation of the phagocyte NADPH oxidase by Rac Guanine nucleotide exchange factors in conjunction with ATP and nucleoside diphosphate kinase. J Biol Chem (2004) 0.98
Energetic and structural analysis of the role of tryptophan 59 in FKBP12. Biochemistry (2003) 0.98
Interplay of hydrogen bonds and n→π* interactions in proteins. J Am Chem Soc (2013) 0.98
SCORER 2.0: an algorithm for distinguishing parallel dimeric and trimeric coiled-coil sequences. Bioinformatics (2011) 0.97
Generalized Crick equations for modeling noncanonical coiled coils. J Struct Biol (2002) 0.96
Evidence of an intermediate and parallel pathways in protein unfolding from single-molecule fluorescence. J Am Chem Soc (2008) 0.96
Mini-proteins Trp the light fantastic. Nat Struct Biol (2002) 0.95
19F NMR studies of the native and denatured states of green fluorescent protein. J Am Chem Soc (2006) 0.95
Atypical bZIP domain of viral transcription factor contributes to stability of dimer formation and transcriptional function. J Virol (2007) 0.95
Designed alpha-helical tectons for constructing multicomponent synthetic biological systems. J Am Chem Soc (2009) 0.95
1H, 15N and 13C backbone assignment of the green fluorescent protein (GFP). J Biomol NMR (2003) 0.94
Self-assembled templates for polypeptide synthesis. J Am Chem Soc (2007) 0.94
A critical role in structure-specific DNA binding for the acetylatable lysine residues in HMGB1. Biochem J (2008) 0.94
Squaring the circle in peptide assembly: from fibers to discrete nanostructures by de novo design. J Am Chem Soc (2012) 0.93
Hsp90 inhibits α-synuclein aggregation by interacting with soluble oligomers. J Mol Biol (2013) 0.92
Molecular knots in biology and chemistry. J Phys Condens Matter (2015) 0.92
Fiber recruiting peptides: noncovalent decoration of an engineered protein scaffold. J Am Chem Soc (2004) 0.92
Introducing branches into a self-assembling peptide fiber. Angew Chem Int Ed Engl (2003) 0.91
LOGICOIL--multi-state prediction of coiled-coil oligomeric state. Bioinformatics (2012) 0.90
"Belt and braces": a peptide-based linker system of de novo design. J Am Chem Soc (2003) 0.90
Flow linear dichroism of some prototypical proteins. J Am Chem Soc (2009) 0.90
Synthetic ligands for apo-neocarzinostatin. J Am Chem Soc (2006) 0.90
Crystal structure and molecular imaging of the Nav channel β3 subunit indicates a trimeric assembly. J Biol Chem (2014) 0.90
Untangling the folding mechanism of the 5(2)-knotted protein UCH-L3. FEBS J (2009) 0.89
Investigating the tolerance of coiled-coil peptides to nonheptad sequence inserts. J Struct Biol (2002) 0.89
A set of de novo designed parallel heterodimeric coiled coils with quantified dissociation constants in the micromolar to sub-nanomolar regime. J Am Chem Soc (2013) 0.89
Biophysical and mutational analysis of the putative bZIP domain of Epstein-Barr virus EBNA 3C. J Virol (2004) 0.88
Microwave enhanced palladium catalysed coupling reactions: a diversity-oriented synthesis approach to functionalised flavones. Chem Commun (Camb) (2006) 0.88
Signatures of n→π* interactions in proteins. Protein Sci (2014) 0.88
Electrostatic control of thickness and stiffness in a designed protein fiber. J Am Chem Soc (2008) 0.88
Templating silica nanostructures on rationally designed self-assembled peptide fibers. Langmuir (2008) 0.88
Assembly of the phagocyte NADPH oxidase complex: chimeric constructs derived from the cytosolic components as tools for exploring structure-function relationships. J Leukoc Biol (2006) 0.87
Protein denaturation and protein:drugs interactions from intrinsic protein fluorescence measurements at the nanolitre scale. Protein Sci (2010) 0.87
Characterization of chromoshadow domain-mediated binding of heterochromatin protein 1α (HP1α) to histone H3. J Biol Chem (2012) 0.86
Side-chain pairing preferences in the parallel coiled-coil dimer motif: insight on ion pairing between core and flanking sites. J Am Chem Soc (2010) 0.86
Peptide and protein based materials in 2010: from design and structure to function and application. Chem Soc Rev (2010) 0.86
The d'--d--d' vertical triad is less discriminating than the a'--a--a' vertical triad in the antiparallel coiled-coil dimer motif. J Am Chem Soc (2012) 0.86
The extremely slow-exchanging core and acid-denatured state of green fluorescent protein. HFSP J (2008) 0.86