Published in Proc Natl Acad Sci U S A on September 23, 2009
Novel Anti-Nicotine Vaccine Using a Trimeric Coiled-Coil Hapten Carrier. PLoS One (2014) 1.50
Type V secretion: mechanism(s) of autotransport through the bacterial outer membrane. Philos Trans R Soc Lond B Biol Sci (2012) 1.25
Trimeric structure and flexibility of the L1ORF1 protein in human L1 retrotransposition. Nat Struct Mol Biol (2011) 1.08
SadA, a trimeric autotransporter from Salmonella enterica serovar Typhimurium, can promote biofilm formation and provides limited protection against infection. Infect Immun (2011) 0.99
Structure of a Burkholderia pseudomallei trimeric autotransporter adhesin head. PLoS One (2010) 0.98
Complete fiber structures of complex trimeric autotransporter adhesins conserved in enterobacteria. Proc Natl Acad Sci U S A (2012) 0.95
Structure of the meningococcal vaccine antigen NadA and epitope mapping of a bactericidal antibody. Proc Natl Acad Sci U S A (2014) 0.92
Gating of the designed trimeric/tetrameric voltage-gated H+ channel. J Physiol (2012) 0.86
Competition between Coiled-Coil Structures and the Impact on Myosin-10 Bundle Selection. Biophys J (2016) 0.81
Structural Basis for Toughness and Flexibility in the C-terminal Passenger Domain of an Acinetobacter Trimeric Autotransporter Adhesin. J Biol Chem (2015) 0.79
Exploring the atomic structure and conformational flexibility of a 320 Å long engineered viral fiber using X-ray crystallography. Acta Crystallogr D Biol Crystallogr (2014) 0.79
Ion-dipole interactions and their functions in proteins. Protein Sci (2015) 0.78
α/β coiled coils. Elife (2016) 0.78
An S188V mutation alters substrate specificity of non-stereospecific α-haloalkanoic acid dehalogenase E (DehE). PLoS One (2015) 0.77
Protein Crystallography in Vaccine Research and Development. Int J Mol Sci (2015) 0.77
A Crystallographic Examination of Predisposition versus Preorganization in de Novo Designed Metalloproteins. J Am Chem Soc (2016) 0.77
Insights into the stereospecificity of the d-specific dehalogenase from Rhizobium sp. RC1 toward d- and l-2-chloropropionate. Biotechnol Biotechnol Equip (2014) 0.76
A trimeric lipoprotein assists in trimeric autotransporter biogenesis in enterobacteria. J Biol Chem (2013) 0.76
The accommodation index measures the perturbation associated with insertions and deletions in coiled-coils. Application to understand signaling in histidine kinases. Protein Sci (2016) 0.75
Type V Secretion: the Autotransporter and Two-Partner Secretion Pathways. Ecosal Plus (2010) 0.75
A switch between two-, three-, and four-stranded coiled coils in GCN4 leucine zipper mutants. Science (1993) 10.16
The structure of alpha-helical coiled coils. Adv Protein Chem (2005) 3.99
Analysis of alpha-helical coiled coils with the program TWISTER reveals a structural mechanism for stutter compensation. J Struct Biol (2002) 2.28
Is alpha-keratin a coiled coil? Nature (1952) 2.18
Coiled-coils in alpha-helix-containing proteins: analysis of the residue types within the heptad repeat and the use of these data in the prediction of coiled-coils in other proteins. Biosci Rep (1982) 2.13
Buried polar residues and structural specificity in the GCN4 leucine zipper. Nat Struct Biol (1996) 2.06
Trimeric autotransporter adhesins: variable structure, common function. Trends Microbiol (2006) 2.02
Bartonella adhesin a mediates a proangiogenic host cell response. J Exp Med (2004) 1.84
Buried polar residues in coiled-coil interfaces. Biochemistry (2001) 1.62
Domain annotation of trimeric autotransporter adhesins--daTAA. Bioinformatics (2008) 1.41
CC+: a relational database of coiled-coil structures. Nucleic Acids Res (2008) 1.34
Structure of the head of the Bartonella adhesin BadA. PLoS Pathog (2008) 1.17
Three-stranded alpha-fibrous proteins: the heptad repeat and its implications for structure. Int J Biol Macromol (1991) 1.12
Crystallographic structure of the alpha-helical triple coiled-coil domain of avian reovirus S1133 fibre. J Gen Virol (2009) 0.99
A buried polar residue in the hydrophobic interface of the coiled-coil peptide, GCN4-p1, plays a thermodynamic, not a kinetic role in folding. J Mol Biol (2002) 0.99
A new expression system for protein crystallization using trimeric coiled-coil adaptors. Protein Eng Des Sel (2007) 0.98
The HHpred interactive server for protein homology detection and structure prediction. Nucleic Acids Res (2005) 21.68
MODOMICS: a database of RNA modification pathways--2013 update. Nucleic Acids Res (2012) 4.43
The HAMP domain structure implies helix rotation in transmembrane signaling. Cell (2006) 4.34
Phosphoproteome analysis of the human mitotic spindle. Proc Natl Acad Sci U S A (2006) 3.56
The MPI Bioinformatics Toolkit for protein sequence analysis. Nucleic Acids Res (2006) 3.45
MODOMICS: a database of RNA modification pathways. 2008 update. Nucleic Acids Res (2008) 2.84
Structure of the human voltage-dependent anion channel. Proc Natl Acad Sci U S A (2008) 2.69
Regulation of Hsp90 ATPase activity by the co-chaperone Cdc37p/p50cdc37. J Biol Chem (2002) 2.32
PhyloGenie: automated phylome generation and analysis. Nucleic Acids Res (2004) 2.26
Self-assembling cages from coiled-coil peptide modules. Science (2013) 2.24
Substrate recognition by the AAA+ chaperone ClpB. Nat Struct Mol Biol (2004) 2.19
AAA+ proteins and substrate recognition, it all depends on their partner in crime. FEBS Lett (2002) 2.10
Structure and activity of the N-terminal substrate recognition domains in proteasomal ATPases. Mol Cell (2009) 2.05
n-->pi* interactions in proteins. Nat Chem Biol (2010) 2.02
Phylogenetic analysis of AAA proteins. J Struct Biol (2004) 1.92
TPRpred: a tool for prediction of TPR-, PPR- and SEL1-like repeats from protein sequences. BMC Bioinformatics (2007) 1.89
More than the sum of their parts: on the evolution of proteins from peptides. Bioessays (2003) 1.83
HHsenser: exhaustive transitive profile search using HMM-HMM comparison. Nucleic Acids Res (2006) 1.82
Structural and evolutionary bioinformatics of the SPOUT superfamily of methyltransferases. BMC Bioinformatics (2007) 1.74
Rational design and application of responsive alpha-helical peptide hydrogels. Nat Mater (2009) 1.63
Molecular details of Bax activation, oligomerization, and membrane insertion. J Biol Chem (2009) 1.60
Xenopus polo-like kinase Plx1 regulates XErp1, a novel inhibitor of APC/C activity. Genes Dev (2005) 1.57
prlF and yhaV encode a new toxin-antitoxin system in Escherichia coli. J Mol Biol (2007) 1.57
Classification of AAA+ proteins. J Struct Biol (2006) 1.55
REPPER--repeats and their periodicities in fibrous proteins. Nucleic Acids Res (2005) 1.50
Evolution of the beta-propeller fold. Proteins (2008) 1.48
Modeling AAA+ ring complexes from monomeric structures. J Struct Biol (2006) 1.48
AbrB-like transcription factors assume a swapped hairpin fold that is evolutionarily related to double-psi beta barrels. Structure (2005) 1.45
Homology of SMP domains to the TULIP superfamily of lipid-binding proteins provides a structural basis for lipid exchange between ER and mitochondria. Bioinformatics (2010) 1.44
Comparative analysis of coiled-coil prediction methods. J Struct Biol (2006) 1.43
A periodic table of coiled-coil protein structures. J Mol Biol (2008) 1.39
Structural basis of outer membrane protein biogenesis in bacteria. J Biol Chem (2011) 1.38
Peptide and protein building blocks for synthetic biology: from programming biomolecules to self-organized biomolecular systems. ACS Chem Biol (2008) 1.36
Comprehensive analysis of HAMP domains: implications for transmembrane signal transduction. J Mol Biol (2010) 1.35
CC+: a relational database of coiled-coil structures. Nucleic Acids Res (2008) 1.34
Engineering nanoscale order into a designed protein fiber. Proc Natl Acad Sci U S A (2007) 1.31
Engineering the morphology of a self-assembling protein fibre. Nat Mater (2003) 1.31
The evolution and structure prediction of coiled coils across all genomes. J Mol Biol (2010) 1.30
The mechanisms of HAMP-mediated signaling in transmembrane receptors. Structure (2011) 1.30
A de novo peptide hexamer with a mutable channel. Nat Chem Biol (2011) 1.30
Historical review: another 50th anniversary--new periodicities in coiled coils. Trends Biochem Sci (2003) 1.29
Preferred side-chain constellations at antiparallel coiled-coil interfaces. Proc Natl Acad Sci U S A (2008) 1.26
Extended knobs-into-holes packing in classical and complex coiled-coil assemblies. J Struct Biol (2003) 1.24
Nanomolar inhibitors of the peptidyl prolyl cis/trans isomerase Pin1 from combinatorial peptide libraries. J Med Chem (2006) 1.23
Gene duplication of the eight-stranded beta-barrel OmpX produces a functional pore: a scenario for the evolution of transmembrane beta-barrels. J Mol Biol (2006) 1.22
Correct folding of the beta-barrel of the human membrane protein VDAC requires a lipid bilayer. J Mol Biol (2007) 1.21
Model structure of the prototypical non-fimbrial adhesin YadA of Yersinia enterocolitica. J Struct Biol (2006) 1.20
Structural insights into quinolone antibiotic resistance mediated by pentapeptide repeat proteins: conserved surface loops direct the activity of a Qnr protein from a gram-negative bacterium. Nucleic Acids Res (2011) 1.18
A polycystin-2 (TRPP2) dimerization domain essential for the function of heteromeric polycystin complexes. EMBO J (2010) 1.18
Structure of the head of the Bartonella adhesin BadA. PLoS Pathog (2008) 1.17
HHomp--prediction and classification of outer membrane proteins. Nucleic Acids Res (2009) 1.16
The notch ligand Delta1 recruits Dlg1 at cell-cell contacts and regulates cell migration. J Biol Chem (2004) 1.15
The 3D structures of VDAC represent a native conformation. Trends Biochem Sci (2010) 1.13
Mechanism of regulation of receptor histidine kinases. Structure (2012) 1.13
Synthetic biology through biomolecular design and engineering. Curr Opin Struct Biol (2008) 1.10
ZiCo: a peptide designed to switch folded state upon binding zinc. J Am Chem Soc (2005) 1.10
Structural basis of N-end rule substrate recognition in Escherichia coli by the ClpAP adaptor protein ClpS. EMBO Rep (2009) 1.10
Mechanism of 2-oxoglutarate signaling by the Synechococcus elongatus PII signal transduction protein. Proc Natl Acad Sci U S A (2010) 1.09
De novo designed peptides for biological applications. Chem Soc Rev (2011) 1.09
Purification of the YadA membrane anchor for secondary structure analysis and crystallization. Int J Biol Macromol (2006) 1.09
Evolutionary relationships of microbial aromatic prenyltransferases. PLoS One (2011) 1.09
A conserved glycine residue of trimeric autotransporter domains plays a key role in Yersinia adhesin A autotransport. J Bacteriol (2007) 1.08
Kinking the coiled coil--negatively charged residues at the coiled-coil interface. J Mol Biol (2006) 1.08
SMG6 interacts with the exon junction complex via two conserved EJC-binding motifs (EBMs) required for nonsense-mediated mRNA decay. Genes Dev (2010) 1.08
Cradle-loop barrels and the concept of metafolds in protein classification by natural descent. Curr Opin Struct Biol (2008) 1.07
The Sulfolobus solfataricus AAA protein Sso0909, a homologue of the eukaryotic ESCRT Vps4 ATPase. Biochem Soc Trans (2008) 1.07
Omp85 from the thermophilic cyanobacterium Thermosynechococcus elongatus differs from proteobacterial Omp85 in structure and domain composition. J Biol Chem (2010) 1.07
Efficient subfractionation of gram-negative bacteria for proteomics studies. J Proteome Res (2010) 1.07
Common evolutionary origin of swapped-hairpin and double-psi beta barrels. Structure (2006) 1.06
High-level expression, refolding and probing the natural fold of the human voltage-dependent anion channel isoforms I and II. J Membr Biol (2007) 1.06
A galaxy of folds. Protein Sci (2010) 1.05
Prediction and analysis of higher-order coiled-coils: insights from proteins of the extracellular matrix, tenascins and thrombospondins. Int J Biochem Cell Biol (2013) 1.03
Structure of a halophilic nucleoside diphosphate kinase from Halobacterium salinarum. FEBS Lett (2005) 1.02
The head of Bartonella adhesin A is crucial for host cell interaction of Bartonella henselae. Cell Microbiol (2008) 1.01
The Tim21 binding domain connects the preprotein translocases of both mitochondrial membranes. EMBO Rep (2006) 1.00
A basis set of de novo coiled-coil peptide oligomers for rational protein design and synthetic biology. ACS Synth Biol (2012) 1.00
The yfhQ gene of Escherichia coli encodes a tRNA:Cm32/Um32 methyltransferase. BMC Mol Biol (2006) 1.00
On the origin of the histone fold. BMC Struct Biol (2007) 1.00
A designed system for assessing how sequence affects alpha to beta conformational transitions in proteins. J Biol Chem (2001) 0.99
Functional mapping of YadA- and Ail-mediated binding of human factor H to Yersinia enterocolitica serotype O:3. Infect Immun (2008) 0.99
MagicWand: a single, designed peptide that assembles to stable, ordered alpha-helical fibers. Biochemistry (2008) 0.98
A new expression system for protein crystallization using trimeric coiled-coil adaptors. Protein Eng Des Sel (2007) 0.98
Coiled coils meet the chaperone world. Trends Biochem Sci (2004) 0.98
Interplay of hydrogen bonds and n→π* interactions in proteins. J Am Chem Soc (2013) 0.98
SCORER 2.0: an algorithm for distinguishing parallel dimeric and trimeric coiled-coil sequences. Bioinformatics (2011) 0.97
Generalized Crick equations for modeling noncanonical coiled coils. J Struct Biol (2002) 0.96
Mini-proteins Trp the light fantastic. Nat Struct Biol (2002) 0.95
The structure of E. coli IgG-binding protein D suggests a general model for bending and binding in trimeric autotransporter adhesins. Structure (2011) 0.95