Published in Cancer Res on August 01, 2004
qBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data. Genome Biol (2007) 16.15
Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. Plant Physiol (2005) 15.10
A novel and universal method for microRNA RT-qPCR data normalization. Genome Biol (2009) 6.25
Selection of housekeeping genes for gene expression studies in human reticulocytes using real-time PCR. BMC Mol Biol (2006) 4.96
Differential network biology. Mol Syst Biol (2012) 3.74
Selection of internal control genes for quantitative real-time RT-PCR studies during tomato development process. BMC Plant Biol (2008) 3.57
High throughput gene expression measurement with real time PCR in a microfluidic dynamic array. PLoS One (2008) 3.34
Four miRNAs associated with aggressiveness of lymph node-negative, estrogen receptor-positive human breast cancer. Proc Natl Acad Sci U S A (2008) 3.08
Identification and validation of reference genes for quantitative RT-PCR normalization in wheat. BMC Mol Biol (2009) 3.04
Validation of internal control for gene expression study in soybean by quantitative real-time PCR. BMC Mol Biol (2008) 2.94
Exploring valid reference genes for gene expression studies in Brachypodium distachyon by real-time PCR. BMC Plant Biol (2008) 2.73
Normalisation of real-time RT-PCR gene expression measurements in Arabidopsis thaliana exposed to increased metal concentrations. Planta (2008) 2.68
Towards a systematic validation of references in real-time rt-PCR. Plant Cell (2008) 2.37
Validation of reference genes for quantitative expression analysis by real-time RT-PCR in Saccharomyces cerevisiae. BMC Mol Biol (2009) 2.36
Selection of reliable reference genes for gene expression studies in peach using real-time PCR. BMC Mol Biol (2009) 2.35
Evaluation of putative reference genes for gene expression normalization in soybean by quantitative real-time RT-PCR. BMC Mol Biol (2009) 2.34
Identification of suitable endogenous control genes for microRNA gene expression analysis in human breast cancer. BMC Mol Biol (2008) 2.30
Selection of reference genes for quantitative real-time PCR in bovine preimplantation embryos. BMC Dev Biol (2005) 2.14
RefGenes: identification of reliable and condition specific reference genes for RT-qPCR data normalization. BMC Genomics (2011) 2.14
Identification and evaluation of new reference genes in Gossypium hirsutum for accurate normalization of real-time quantitative RT-PCR data. BMC Plant Biol (2010) 2.11
MicroRNA expression profiling to identify and validate reference genes for relative quantification in colorectal cancer. BMC Cancer (2010) 2.10
Exosomal miR-1290 and miR-375 as prognostic markers in castration-resistant prostate cancer. Eur Urol (2014) 2.05
Identification of suitable reference genes for qPCR analysis of serum microRNA in gastric cancer patients. Dig Dis Sci (2011) 2.02
In search of suitable reference genes for gene expression studies of human renal cell carcinoma by real-time PCR. BMC Mol Biol (2007) 1.93
Social exploitation of hexamerin: RNAi reveals a major caste-regulatory factor in termites. Proc Natl Acad Sci U S A (2006) 1.88
Identification and validation of housekeeping genes in brains of the desert locust Schistocerca gregaria under different developmental conditions. BMC Mol Biol (2009) 1.84
Stable internal reference genes for normalization of real-time RT-PCR in tobacco (Nicotiana tabacum) during development and abiotic stress. Mol Genet Genomics (2010) 1.83
Validation of reference genes for quantitative real-time PCR during leaf and flower development in Petunia hybrida. BMC Plant Biol (2010) 1.82
Comprehensive selection of reference genes for gene expression normalization in sugarcane by real time quantitative rt-PCR. PLoS One (2014) 1.79
Reference genes for accurate transcript normalization in citrus genotypes under different experimental conditions. PLoS One (2012) 1.77
Reference genes in real-time PCR. J Appl Genet (2013) 1.75
Identification of suitable internal control genes for expression studies in Coffea arabica under different experimental conditions. BMC Mol Biol (2009) 1.75
Identification and validation of suitable endogenous reference genes for gene expression studies in human peripheral blood. BMC Med Genomics (2009) 1.73
Selection of reference genes for qRT-PCR examination of wild populations of Atlantic cod Gadus morhua. BMC Res Notes (2008) 1.71
Validation of reference genes for RT-qPCR studies of gene expression in banana fruit under different experimental conditions. Planta (2011) 1.69
Validation of reference genes for gene expression analysis in chicory (Cichorium intybus) using quantitative real-time PCR. BMC Mol Biol (2010) 1.68
Selection of reference genes for quantitative gene expression normalization in flax (Linum usitatissimum L.). BMC Plant Biol (2010) 1.67
Identification of valid reference genes for the normalization of RT qPCR gene expression data in human brain tissue. BMC Mol Biol (2008) 1.62
'Desperate house genes': the dramatic example of hypoxia. Br J Cancer (2010) 1.59
Careful selection of reference genes is required for reliable performance of RT-qPCR in human normal and cancer cell lines. PLoS One (2013) 1.58
Evaluation of new reference genes in papaya for accurate transcript normalization under different experimental conditions. PLoS One (2012) 1.56
Selection of reference genes for quantitative RT-PCR studies in striped dolphin (Stenella coeruleoalba) skin biopsies. BMC Mol Biol (2006) 1.56
Evaluation of microarray preprocessing algorithms based on concordance with RT-PCR in clinical samples. PLoS One (2009) 1.55
Identification of novel reference genes using multiplatform expression data and their validation for quantitative gene expression analysis. PLoS One (2009) 1.55
MicroRNA-328 is associated with (non-small) cell lung cancer (NSCLC) brain metastasis and mediates NSCLC migration. Int J Cancer (2011) 1.55
Exercise induced stress in horses: selection of the most stable reference genes for quantitative RT-PCR normalization. BMC Mol Biol (2008) 1.55
miR398 and miR408 are up-regulated in response to water deficit in Medicago truncatula. Planta (2009) 1.53
Validation of reference genes for quantitative RT-PCR studies of gene expression in perennial ryegrass (Lolium perenne L.). BMC Mol Biol (2010) 1.51
Identification of the long non-coding RNA POU3F3 in plasma as a novel biomarker for diagnosis of esophageal squamous cell carcinoma. Mol Cancer (2015) 1.51
MicroRNA profiling of adrenocortical tumors reveals miR-483 as a marker of malignancy. Cancer (2010) 1.51
Analysis of Deregulated microRNAs and Their Target Genes in Gastric Cancer. PLoS One (2015) 1.50
Selection and validation of reference genes for quantitative real-time PCR in buckwheat (Fagopyrum esculentum) based on transcriptome sequence data. PLoS One (2011) 1.50
Identification of reference genes for quantitative expression analysis of microRNAs and mRNAs in barley under various stress conditions. PLoS One (2015) 1.49
Evaluation of candidate reference genes for gene expression normalization in Brassica juncea using real time quantitative RT-PCR. PLoS One (2012) 1.49
Next-generation annotation of prokaryotic genomes with EuGene-P: application to Sinorhizobium meliloti 2011. DNA Res (2013) 1.48
Reference genes selection and normalization of oxidative stress responsive genes upon different temperature stress conditions in Hypericum perforatum L. PLoS One (2014) 1.46
Validation of reference housekeeping genes for gene expression studies in western corn rootworm (Diabrotica virgifera virgifera). PLoS One (2014) 1.46
Selection of housekeeping genes for gene expression studies in larvae from flatfish using real-time PCR. BMC Mol Biol (2008) 1.45
Selection of suitable housekeeping genes for expression analysis in glioblastoma using quantitative RT-PCR. BMC Mol Biol (2009) 1.45
Reference gene selection for qRT-PCR analysis in the sweetpotato whitefly, Bemisia tabaci (Hemiptera: Aleyrodidae). PLoS One (2013) 1.45
Validation of putative reference genes for gene expression studies in human hepatocellular carcinoma using real-time quantitative RT-PCR. BMC Cancer (2008) 1.44
Housekeeping while brain's storming Validation of normalizing factors for gene expression studies in a murine model of traumatic brain injury. BMC Mol Biol (2008) 1.44
Validation of endogenous reference genes for qRT-PCR analysis of human visceral adipose samples. BMC Mol Biol (2010) 1.42
Identification of genes for normalization of real-time RT-PCR data in breast carcinomas. BMC Cancer (2008) 1.42
Selection of reference genes for quantitative real-time PCR in bamboo (Phyllostachys edulis). PLoS One (2013) 1.41
Validation of reference genes as internal control for studying viral infections in cereals by quantitative real-time RT-PCR. BMC Plant Biol (2010) 1.41
Evaluation of endogenous references for gene expression profiling in different tissues of the oriental fruit fly Bactrocera dorsalis (Diptera: Tephritidae). BMC Mol Biol (2010) 1.41
Defining reference genes in Oryza sativa using organ, development, biotic and abiotic transcriptome datasets. BMC Plant Biol (2010) 1.41
Gene expression signatures for colorectal cancer microsatellite status and HNPCC. Br J Cancer (2005) 1.40
Altered astrocytic swelling in the cortex of α-syntrophin-negative GFAP/EGFP mice. PLoS One (2014) 1.40
Dysregulation of the transcription factors SOX4, CBFB and SMARCC1 correlates with outcome of colorectal cancer. Br J Cancer (2009) 1.40
Selection of reference genes for quantitative real-time PCR in a rat asphyxial cardiac arrest model. BMC Mol Biol (2008) 1.39
De-regulation of common housekeeping genes in hepatocellular carcinoma. BMC Genomics (2007) 1.39
Selection of reliable reference genes for expression studies by reverse transcription quantitative real-time PCR in litchi under different experimental conditions. Plant Cell Rep (2011) 1.38
Evaluation of suitable reference genes for gene expression studies in bovine muscular tissue. BMC Mol Biol (2008) 1.38
Limited effects of preterm birth and the first enteral nutrition on cerebellum morphology and gene expression in piglets. Physiol Rep (2016) 1.37
Selection of suitable reference genes for accurate normalization of gene expression profile studies in non-small cell lung cancer. BMC Cancer (2006) 1.37
Target identification for CNS diseases by transcriptional profiling. Neuropsychopharmacology (2008) 1.32
microRNAs derived from circulating exosomes as noninvasive biomarkers for screening and diagnosing lung cancer. J Thorac Oncol (2013) 1.31
Housekeeping genes for quantitative expression studies in the three-spined stickleback Gasterosteus aculeatus. BMC Mol Biol (2008) 1.30
Validation of suitable house keeping genes for hypoxia-cultured human chondrocytes. BMC Mol Biol (2009) 1.30
Genome-wide microRNA profiling of human temporal lobe epilepsy identifies modulators of the immune response. Cell Mol Life Sci (2012) 1.30
Clinical relevance of microRNA miR-21, miR-31, miR-92a, miR-101, miR-106a and miR-145 in colorectal cancer. BMC Cancer (2012) 1.30
Exploring valid reference genes for quantitative real-time PCR analysis in Plutella xylostella (Lepidoptera: Plutellidae). Int J Biol Sci (2013) 1.30
Evaluation and validation of candidate endogenous control genes for real-time quantitative PCR studies of breast cancer. BMC Mol Biol (2007) 1.29
Selection of stable reference genes for quantitative rt-PCR comparisons of mouse embryonic and extra-embryonic stem cells. PLoS One (2011) 1.27
Selection and evaluation of reference genes for expression analysis using qRT-PCR in the beet armyworm Spodoptera exigua (Hübner) (Lepidoptera: Noctuidae). PLoS One (2014) 1.27
Reference gene selection for quantitative real-time PCR normalization in Caragana intermedia under different abiotic stress conditions. PLoS One (2013) 1.26
Selecting control genes for RT-QPCR using public microarray data. BMC Bioinformatics (2009) 1.26
Reference genes for real-time PCR quantification of microRNAs and messenger RNAs in rat models of hepatotoxicity. PLoS One (2012) 1.24
Identification of new reference genes for the normalisation of canine osteoarthritic joint tissue transcripts from microarray data. BMC Mol Biol (2007) 1.24
CD2-positive B-cell precursor acute lymphoblastic leukemia with an early switch to the monocytic lineage. Leukemia (2013) 1.24
Arabidopsis SET DOMAIN GROUP2 is required for H3K4 trimethylation and is crucial for both sporophyte and gametophyte development. Plant Cell (2010) 1.23
P2X1 and P2X5 subunits form the functional P2X receptor in mouse cortical astrocytes. J Neurosci (2008) 1.23
Selection of reliable reference genes during THP-1 monocyte differentiation into macrophages. BMC Mol Biol (2010) 1.23
Validation of reference genes for RT-qPCR normalization in common bean during biotic and abiotic stresses. Plant Cell Rep (2011) 1.23
Validation of reference genes for quantitative expression analysis by real-time rt-PCR in four lepidopteran insects. J Insect Sci (2012) 1.23
Selection of reliable reference genes in Caenorhabditis elegans for analysis of nanotoxicity. PLoS One (2012) 1.22
Identifying distinct classes of bladder carcinoma using microarrays. Nat Genet (2002) 3.82
Bayesian coestimation of phylogeny and sequence alignment. BMC Bioinformatics (2005) 3.62
Frequent occurrence of uniparental disomy in colorectal cancer. Carcinogenesis (2006) 1.99
Role of activating fibroblast growth factor receptor 3 mutations in the development of bladder tumors. Clin Cancer Res (2005) 1.25
Discovery of prostate cancer biomarkers by microarray gene expression profiling. Expert Rev Mol Diagn (2010) 1.16
Statistical inference in evolutionary models of DNA sequences via the EM algorithm. Stat Appl Genet Mol Biol (2005) 1.12
Recursions for statistical multiple alignment. Proc Natl Acad Sci U S A (2003) 1.02
Quantitative proteomics of fractionated membrane and lumen exosome proteins from isogenic metastatic and nonmetastatic bladder cancer cells reveal differential expression of EMT factors. Proteomics (2014) 0.95
Zinc transporter gene expression is regulated by pro-inflammatory cytokines: a potential role for zinc transporters in beta-cell apoptosis? BMC Endocr Disord (2009) 0.94
Phosphoprotein Keratin 23 accumulates in MSS but not MSI colon cancers in vivo and impacts viability and proliferation in vitro. Mol Oncol (2007) 0.94
Frequent genomic loss at chr16p13.2 is associated with poor prognosis in colorectal cancer. Int J Cancer (2011) 0.94
Synaptic contact number and size in stratum radiatum CA1 of APP/PS1DeltaE9 transgenic mice. Neurobiol Aging (2008) 0.93
Promoter hypomethylation and upregulation of trefoil factors in prostate cancer. Int J Cancer (2010) 0.92
Secretagogin is a novel marker for neuroendocrine differentiation. Neuroendocrinology (2006) 0.92
Clusterin expression in normal mucosa and colorectal cancer. Mol Cell Proteomics (2007) 0.88
Genetic and epigenetic SLC18A2 silencing in prostate cancer is an independent adverse predictor of biochemical recurrence after radical prostatectomy. Clin Cancer Res (2009) 0.87
Validation of the use of DNA pools and primer extension in association studies of sporadic colorectal cancer for selection of candidate SNPs. Hum Mutat (2006) 0.87
Chromosomal deletion, promoter hypermethylation and downregulation of FYN in prostate cancer. Int J Cancer (2008) 0.83
Keratin23 (KRT23) knockdown decreases proliferation and affects the DNA damage response of colon cancer cells. PLoS One (2013) 0.82
Applications of hidden Markov models for characterization of homologous DNA sequences with a common gene. J Comput Biol (2005) 0.81
Chromosomal imbalance in the progression of high-risk non-muscle invasive bladder cancer. BMC Cancer (2009) 0.80
Expression of FK506 binding protein 65 (FKBP65) is decreased in epithelial ovarian cancer cells compared to benign tumor cells and to ovarian epithelium. Tumour Biol (2011) 0.77
Allelic deletions of Rb and L-myc in urine sediments from patients with bladder tumors or carcinoma in situ. Oncol Rep (2002) 0.75
[Genomic microarray technology. The Danish Society of Clinical Biochemistry]. Ugeskr Laeger (2008) 0.75
Are CIMP and chr16p13.2 copy-number status independent prognostic markers in stages II and III colorectal cancer? Int J Cancer (2011) 0.75