Published in Biochemistry on August 24, 2004
The yeast actin cytoskeleton: from cellular function to biochemical mechanism. Microbiol Mol Biol Rev (2006) 2.55
Beta arcades: recurring motifs in naturally occurring and disease-related amyloid fibrils. FASEB J (2009) 1.37
A high-affinity interaction with ADP-actin monomers underlies the mechanism and in vivo function of Srv2/cyclase-associated protein. Mol Biol Cell (2004) 1.18
Srv2/cyclase-associated protein forms hexameric shurikens that directly catalyze actin filament severing by cofilin. Mol Biol Cell (2012) 1.14
Reconstitution and dissection of the 600-kDa Srv2/CAP complex: roles for oligomerization and cofilin-actin binding in driving actin turnover. J Biol Chem (2009) 1.03
Domain analysis of the tubulin cofactor system: a model for tubulin folding and dimerization. BMC Bioinformatics (2003) 1.01
The role of cyclase-associated protein in regulating actin filament dynamics - more than a monomer-sequestration factor. J Cell Sci (2013) 0.97
A central role for the WH2 domain of Srv2/CAP in recharging actin monomers to drive actin turnover in vitro and in vivo. Cytoskeleton (Hoboken) (2010) 0.95
Mammalian and malaria parasite cyclase-associated proteins catalyze nucleotide exchange on G-actin through a conserved mechanism. J Biol Chem (2012) 0.92
Structure and function of a G-actin sequestering protein with a vital role in malaria oocyst development inside the mosquito vector. J Biol Chem (2010) 0.91
CAS-1, a C. elegans cyclase-associated protein, is required for sarcomeric actin assembly in striated muscle. J Cell Sci (2012) 0.85
Bayesian classification of residues associated with protein functional divergence: Arf and Arf-like GTPases. Biol Direct (2010) 0.81
Autonomous and in trans functions for the two halves of Srv2/CAP in promoting actin turnover. Cytoskeleton (Hoboken) (2014) 0.80
ATP-dependent regulation of actin monomer-filament equilibrium by cyclase-associated protein and ADF/cofilin. Biochem J (2013) 0.79
Phosphorylation of the cytoskeletal protein CAP1 controls its association with cofilin and actin. J Cell Sci (2014) 0.77
The C-terminal dimerization motif of cyclase-associated protein is essential for actin monomer regulation. Biochem J (2016) 0.75
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics (2006) 43.68
The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families. PLoS Biol (2007) 13.99
Protein tyrosine phosphatases in the human genome. Cell (2004) 8.09
The importance of alignment accuracy for molecular replacement. Acta Crystallogr D Biol Crystallogr (2004) 6.49
Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline. Proc Natl Acad Sci U S A (2002) 6.00
Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics (2002) 5.46
Flexible structure alignment by chaining aligned fragment pairs allowing twists. Bioinformatics (2003) 5.46
FFAS03: a server for profile--profile sequence alignments. Nucleic Acids Res (2005) 4.99
Type VI secretion apparatus and phage tail-associated protein complexes share a common evolutionary origin. Proc Natl Acad Sci U S A (2009) 4.88
The NLR gene family: a standard nomenclature. Immunity (2008) 4.77
A primer on metagenomics. PLoS Comput Biol (2010) 4.40
S-nitrosylation of Drp1 mediates beta-amyloid-related mitochondrial fission and neuronal injury. Science (2009) 4.25
Protein production and purification. Nat Methods (2008) 3.97
Structure-based activity prediction for an enzyme of unknown function. Nature (2007) 3.65
Shotgun metaproteomics of the human distal gut microbiota. ISME J (2008) 3.43
Exploration of uncharted regions of the protein universe. PLoS Biol (2009) 3.41
A Blueprint for HIV Vaccine Discovery. Cell Host Microbe (2012) 3.27
The amphioxus genome illuminates vertebrate origins and cephalochordate biology. Genome Res (2008) 3.04
FATCAT: a web server for flexible structure comparison and structure similarity searching. Nucleic Acids Res (2004) 2.49
Mitochondrial fission in apoptosis, neurodegeneration and aging. Curr Opin Cell Biol (2003) 2.44
CutDB: a proteolytic event database. Nucleic Acids Res (2006) 2.41
Three-dimensional structural view of the central metabolic network of Thermotoga maritima. Science (2009) 2.33
Outcome of a workshop on archiving structural models of biological macromolecules. Structure (2006) 2.32
Prediction and assignment of function for a divergent N-succinyl amino acid racemase. Nat Chem Biol (2007) 2.29
Pre-calculated protein structure alignments at the RCSB PDB website. Bioinformatics (2010) 2.28
XtalPred: a web server for prediction of protein crystallizability. Bioinformatics (2007) 2.26
TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model. BMC Bioinformatics (2008) 2.26
The PAAD/PYRIN-only protein POP1/ASC2 is a modulator of ASC-mediated nuclear-factor-kappa B and pro-caspase-1 regulation. Biochem J (2003) 2.25
Molecular features of the copper binding sites in the octarepeat domain of the prion protein. Biochemistry (2002) 2.16
The domains of apoptosis: a genomics perspective. Sci STKE (2004) 2.15
Evolution of enzymatic activities in the enolase superfamily: L-fuconate dehydratase from Xanthomonas campestris. Biochemistry (2006) 2.15
Programmed death-1 (PD-1)-deficient mice are extraordinarily sensitive to tuberculosis. Proc Natl Acad Sci U S A (2010) 2.12
Probing metagenomics by rapid cluster analysis of very large datasets. PLoS One (2008) 2.11
Comparative genomic analyses of the human fungal pathogens Coccidioides and their relatives. Genome Res (2009) 2.10
Automatic detection of subsystem/pathway variants in genome analysis. Bioinformatics (2005) 2.10
Outcome of a workshop on applications of protein models in biomedical research. Structure (2009) 2.05
The retinitis pigmentosa GTPase regulator (RPGR)- interacting protein: subserving RPGR function and participating in disk morphogenesis. Proc Natl Acad Sci U S A (2003) 1.96
Comparative analysis of protein domain organization. Genome Res (2004) 1.94
PSI-2: structural genomics to cover protein domain family space. Structure (2009) 1.92
The myosin motor in muscle generates a smaller and slower working stroke at higher load. Nature (2004) 1.92
T cell immunoglobulin mucin-3 crystal structure reveals a galectin-9-independent ligand-binding surface. Immunity (2007) 1.92
Structural genomics: a pipeline for providing structures for the biologist. Protein Sci (2002) 1.91
Discovery of a dipeptide epimerase enzymatic function guided by homology modeling and virtual screening. Structure (2008) 1.91
Identification and characterization of a novel bacterial virulence factor that shares homology with mammalian Toll/interleukin-1 receptor family proteins. Infect Immun (2006) 1.91
Between order and disorder in protein structures: analysis of "dual personality" fragments in proteins. Structure (2007) 1.88
The JCSG high-throughput structural biology pipeline. Acta Crystallogr Sect F Struct Biol Cryst Commun (2010) 1.87
The Enzyme Function Initiative. Biochemistry (2011) 1.87
The challenge of protein structure determination--lessons from structural genomics. Protein Sci (2007) 1.82
Structure of the actin crosslinking core of fimbrin. Structure (2004) 1.82
The octarepeat domain of the prion protein binds Cu(II) with three distinct coordination modes at pH 7.4. J Am Chem Soc (2005) 1.80
Cysteine regulation of protein function--as exemplified by NMDA-receptor modulation. Trends Neurosci (2002) 1.76
The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr (2007) 1.75
Regulation of myosin-IIA assembly and Mts1 binding by heavy chain phosphorylation. Biochemistry (2005) 1.73
Structural basis for the coevolution of a viral RNA-protein complex. Nat Struct Mol Biol (2007) 1.71
Structural and functional analysis of the costimulatory receptor programmed death-1. Immunity (2004) 1.70
Copper coordination in the full-length, recombinant prion protein. Biochemistry (2003) 1.66
Evolutionarily conserved cytoprotection provided by Bax Inhibitor-1 homologs from animals, plants, and yeast. Gene (2003) 1.65
Multiple flexible structure alignment using partial order graphs. Bioinformatics (2005) 1.64
Surprising complexity of the ancestral apoptosis network. Genome Biol (2007) 1.63
ZBP1 recognition of beta-actin zipcode induces RNA looping. Genes Dev (2010) 1.63
Crystal structure of the complex between programmed death-1 (PD-1) and its ligand PD-L2. Proc Natl Acad Sci U S A (2008) 1.55
Neighboring group participation in the transition state of human purine nucleoside phosphorylase. Biochemistry (2007) 1.53
Structural basis of neutralization by a human anti-severe acute respiratory syndrome spike protein antibody, 80R. J Biol Chem (2006) 1.53
FFAS server: novel features and applications. Nucleic Acids Res (2011) 1.52
Structural genomics is the largest contributor of novel structural leverage. J Struct Funct Genomics (2009) 1.52
JAFA: a protein function annotation meta-server. Nucleic Acids Res (2006) 1.52
Crystal structure of TM1367 from Thermotoga maritima at 1.90 A resolution reveals an atypical member of the cyclophilin (peptidylprolyl isomerase) fold. Proteins (2006) 1.51
Structural effects of cofilin on longitudinal contacts in F-actin. J Mol Biol (2002) 1.50
Cleavage targets and the D-arginine-based inhibitors of the West Nile virus NS3 processing proteinase. Biochem J (2006) 1.49
Functional classification of immune regulatory proteins. Structure (2013) 1.49
Functional annotation and three-dimensional structure of Dr0930 from Deinococcus radiodurans, a close relative of phosphotriesterase in the amidohydrolase superfamily. Biochemistry (2009) 1.47
Discovery of new enzymes and metabolic pathways by using structure and genome context. Nature (2013) 1.46
Crystal structure of thy1, a thymidylate synthase complementing protein from Thermotoga maritima at 2.25 A resolution. Proteins (2002) 1.45
The PD-1/PD-L costimulatory pathway critically affects host resistance to the pathogenic fungus Histoplasma capsulatum. Proc Natl Acad Sci U S A (2008) 1.44
Structural genomics of protein phosphatases. J Struct Funct Genomics (2007) 1.40
Structural underpinnings of nitrogen regulation by the prototypical nitrogen-responsive transcriptional factor NrpR. Structure (2010) 1.40
Identification of functional residues on Caenorhabditis elegans actin-interacting protein 1 (UNC-78) for disassembly of actin depolymerizing factor/cofilin-bound actin filaments. J Biol Chem (2004) 1.40
Divergent evolution in enolase superfamily: strategies for assigning functions. J Biol Chem (2011) 1.40