Structural basis of protein kinetic stability: resistance to sodium dodecyl sulfate suggests a central role for rigidity and a bias toward beta-sheet structure.

PubWeight™: 1.73‹?› | Rank: Top 3%

🔗 View Article (PMID 15366934)

Published in Biochemistry on September 07, 2004

Authors

Marta Manning1, Wilfredo Colón

Author Affiliations

1: Department of Chemistry and Chemical Biology, Rensselaer Polytechnic Institute, 110 8th Street, Troy, New York 12180, USA.

Articles citing this

Identifying the subproteome of kinetically stable proteins via diagonal 2D SDS/PAGE. Proc Natl Acad Sci U S A (2007) 1.47

Conformational adaptation of apolipoprotein A-I to discretely sized phospholipid complexes. Biochemistry (2007) 1.42

Impaired post-translational folding of familial ALS-linked Cu, Zn superoxide dismutase mutants. EMBO J (2007) 1.18

Cotranslational folding increases GFP folding yield. Biophys J (2010) 1.09

PagP crystallized from SDS/cosolvent reveals the route for phospholipid access to the hydrocarbon ruler. Structure (2010) 1.09

Unfolding of Green Fluorescent Protein mut2 in wet nanoporous silica gels. Protein Sci (2005) 1.08

Unfolding of beta-sheet proteins in SDS. Biophys J (2007) 1.06

Genome and proteome of Campylobacter jejuni bacteriophage NCTC 12673. Appl Environ Microbiol (2011) 1.01

Differentiation of proteins based on characteristic patterns of association and denaturation in solutions of SDS. Proc Natl Acad Sci U S A (2006) 0.96

Alternative assembly pathways of the amyloidogenic yeast prion determinant Sup35-NM. EMBO Rep (2007) 0.92

Engineering a thermo-stable superoxide dismutase functional at sub-zero to >50°C, which also tolerates autoclaving. Sci Rep (2012) 0.90

Non-targeted identification of prions and amyloid-forming proteins from yeast and mammalian cells. J Biol Chem (2013) 0.89

Experimentally derived structural constraints for amyloid fibrils of wild-type transthyretin. Biophys J (2011) 0.89

Pathway for unfolding of ubiquitin in sodium dodecyl sulfate, studied by capillary electrophoresis. J Am Chem Soc (2008) 0.88

Membrane proteins can have high kinetic stability. J Am Chem Soc (2013) 0.87

Role of copper in thermal stability of human ceruloplasmin. Biophys J (2007) 0.87

Two promising alkaline β-glucosidases isolated by functional metagenomics from agricultural soil, including one showing high tolerance towards harsh detergents, oxidants and glucose. J Ind Microbiol Biotechnol (2014) 0.86

Evolved cobalamin-independent methionine synthase (MetE) improves the acetate and thermal tolerance of Escherichia coli. Appl Environ Microbiol (2013) 0.86

A novel neutral xylanase with high SDS resistance from Volvariella volvacea: characterization and its synergistic hydrolysis of wheat bran with acetyl xylan esterase. J Ind Microbiol Biotechnol (2013) 0.85

Protein unfolding rates correlate as strongly as folding rates with native structure. Protein Sci (2014) 0.84

Complexes of native ubiquitin and dodecyl sulfate illustrate the nature of hydrophobic and electrostatic interactions in the binding of proteins and surfactants. J Am Chem Soc (2011) 0.84

Designed protein reveals structural determinants of extreme kinetic stability. Proc Natl Acad Sci U S A (2015) 0.83

Complete conformational stability of kinetically stable dimeric serine protease milin against pH, temperature, urea, and proteolysis. Eur Biophys J (2009) 0.83

A single residue unique to DinB-like proteins limits formation of the polymerase IV multiprotein complex in Escherichia coli. J Bacteriol (2013) 0.83

Thermostable hexameric form of Eis (Rv2416c) protein of M. tuberculosis plays an important role for enhanced intracellular survival within macrophages. PLoS One (2011) 0.83

A novel xylanase with tolerance to ethanol, salt, protease, SDS, heat, and alkali from actinomycete Lechevalieria sp. HJ3. J Ind Microbiol Biotechnol (2012) 0.83

Influence of protein-micelle ratios and cysteine residues on the kinetic stability and unfolding rates of human mitochondrial VDAC-2. PLoS One (2014) 0.82

Differential modification of Cys10 alters transthyretin's effect on beta-amyloid aggregation and toxicity. Protein Eng Des Sel (2009) 0.82

Conserved acidic amino acid residues in a second RNA recognition motif regulate assembly and function of TDP-43. PLoS One (2012) 0.81

Thermodynamic and structural investigation of the specific SDS binding of Humicola insolens cutinase. Protein Sci (2014) 0.81

Capsule-Targeting Depolymerase, Derived from Klebsiella KP36 Phage, as a Tool for the Development of Anti-Virulent Strategy. Viruses (2016) 0.80

Stabilized homoserine o-succinyltransferases (MetA) or L-methionine partially recovers the growth defect in Escherichia coli lacking ATP-dependent proteases or the DnaK chaperone. BMC Microbiol (2013) 0.80

Symbiotic Streptomyces sp. TN119 GH 11 xylanase: a new pH-stable, protease- and SDS-resistant xylanase. J Ind Microbiol Biotechnol (2010) 0.79

Purified high molecular weight synthetic Aβ(1-42) and biological Aβ oligomers are equipotent in rapidly inducing MTT formazan exocytosis. Neurosci Lett (2011) 0.79

Denaturation of proteins by SDS and tetraalkylammonium dodecyl sulfates. Langmuir (2011) 0.77

Congo Red Interactions with Curli-Producing E. coli and Native Curli Amyloid Fibers. PLoS One (2015) 0.77

Oligomerization, membrane association, and in vivo phosphorylation of sugarcane UDP-glucose pyrophosphorylase. J Biol Chem (2014) 0.77

The critical role of partially exposed N-terminal valine residue in stabilizing GH10 xylanase from Bacillus sp.NG-27 under poly-extreme conditions. PLoS One (2008) 0.77

Mycobacteriophage cell binding proteins for the capture of mycobacteria. Bacteriophage (2014) 0.77

Equilibrium unfolding of kinetically stable serine protease milin: the presence of various active and inactive dimeric intermediates. Eur Biophys J (2010) 0.77

Sorbitol counteracts temperature- and chemical-induced denaturation of a recombinant α-amylase from alkaliphilic Bacillus sp. TS-23. J Ind Microbiol Biotechnol (2012) 0.76

Dynamics of thermodynamically stable, kinetically trapped, and inhibitor-bound states of pepsin. Biophys J (2011) 0.76

Understanding the mechanism of prosegment-catalyzed folding by solution NMR spectroscopy. J Biol Chem (2013) 0.76

Identifying kinetically stable proteins with capillary electrophoresis. Protein Sci (2010) 0.76

1-Anilino-8-naphthalene sulfonate (ANS) is not a desirable probe for determining the molten globule state of chymopapain. PLoS One (2012) 0.76

Analysis of the unique structural and physicochemical properties of the DraD/AfaD invasin in the context of its belonging to the family of chaperone/usher type fimbrial subunits. BMC Struct Biol (2011) 0.76

Characterization of Sphingomonas sp. JB13 exo-inulinase: a novel detergent-, salt-, and protease-tolerant exo-inulinase. Extremophiles (2015) 0.76

Heterologous expression and biochemical characterization of a highly active and stable chloroplastic CuZn-superoxide dismutase from Pisum sativum. BMC Biotechnol (2015) 0.75

Conserved prosegment residues stabilize a late-stage folding transition state of pepsin independently of ground states. PLoS One (2014) 0.75

Size separation of proteins by capillary zone electrophoresis with cationic hitchhiking. Electrophoresis (2011) 0.75

Increased levels of hyper-stable protein aggregates in plasma of older adults. Age (Dordr) (2016) 0.75

Antimicrobial Protein Candidates from the Thermophilic Geobacillus sp. Strain ZGt-1: Production, Proteomics, and Bioinformatics Analysis. Int J Mol Sci (2016) 0.75

Molecular Insight into Human Lysozyme and Its Ability to Form Amyloid Fibrils in High Concentrations of Sodium Dodecyl Sulfate: A View from Molecular Dynamics Simulations. PLoS One (2016) 0.75

Subtilase from Beauveria sp.: conformational and functional investigation of unusual stability. Eur Biophys J (2014) 0.75

Articles by these authors

Identifying the subproteome of kinetically stable proteins via diagonal 2D SDS/PAGE. Proc Natl Acad Sci U S A (2007) 1.47

Decreased stability and increased formation of soluble aggregates by immature superoxide dismutase do not account for disease severity in ALS. Proc Natl Acad Sci U S A (2011) 1.06

Kinetic stability of Cu/Zn superoxide dismutase is dependent on its metal ligands: implications for ALS. Biochemistry (2004) 1.04

Biochemical characterization of major bone-matrix proteins using nanoscale-size bone samples and proteomics methodology. Mol Cell Proteomics (2011) 0.96

Modification of cysteine 111 in Cu/Zn superoxide dismutase results in altered spectroscopic and biophysical properties. Protein Sci (2004) 0.95

Cytochrome C on silica nanoparticles: influence of nanoparticle size on protein structure, stability, and activity. Small (2009) 0.93

Equilibrium denaturation studies of the Escherichia coli factor for inversion stimulation: implications for in vivo function. Protein Sci (2002) 0.93

Cu/Zn superoxide dismutase can form pore-like structures. Biochem Biophys Res Commun (2003) 0.93

Characterization of interactions between heparin/glycosaminoglycan and adeno-associated virus. Biochemistry (2013) 0.93

From hexamer to amyloid: marginal stability of apolipoprotein SAA2.2 leads to in vitro fibril formation at physiological temperature. Amyloid (2005) 0.90

Common and variable contributions of Fis residues to high-affinity binding at different DNA sequences. J Bacteriol (2006) 0.90

Pathogenic serum amyloid A 1.1 shows a long oligomer-rich fibrillation lag phase contrary to the highly amyloidogenic non-pathogenic SAA2.2. J Biol Chem (2012) 0.89

From two-state to three-state: the effect of the P61A mutation on the dynamics and stability of the factor for inversion stimulation results in an altered equilibrium denaturation mechanism. Biochemistry (2002) 0.87

Effect of zinc, copper, and calcium on the structure and stability of serum amyloid A. Biochemistry (2007) 0.85

The interaction between apolipoprotein serum amyloid A and high-density lipoprotein. Biochem Biophys Res Commun (2004) 0.84

Serum amyloid A 2.2 refolds into a octameric oligomer that slowly converts to a more stable hexamer. Biochem Biophys Res Commun (2011) 0.84

Characterization of the oligomerization and aggregation of human Serum Amyloid A. PLoS One (2013) 0.84

Quantifying the kinetic stability of hyperstable proteins via time-dependent SDS trapping. Biochemistry (2011) 0.83

Urea-induced denaturation of apolipoprotein serum amyloid A reveals marginal stability of hexamer. Protein Sci (2005) 0.83

The location of an engineered inter-subunit disulfide bond in factor for inversion stimulation (FIS) affects the denaturation pathway and cooperativity. Biochemistry (2006) 0.81

Geofold: topology-based protein unfolding pathways capture the effects of engineered disulfides on kinetic stability. Proteins (2011) 0.80

Dominant role of copper in the kinetic stability of Cu/Zn superoxide dismutase. Biochem Biophys Res Commun (2005) 0.80

Variable contributions of tyrosine residues to the structural and spectroscopic properties of the factor for inversion stimulation. Biochemistry (2004) 0.79

Do prokaryotes have more kinetically stable proteins than eukaryotic organisms? Biochemistry (2010) 0.79

Inflammation protein SAA2.2 spontaneously forms marginally stable amyloid fibrils at physiological temperature. Biochemistry (2011) 0.78

Green-lighting green fluorescent protein: faster and more efficient folding by eliminating a cis-trans peptide isomerization event. Protein Sci (2014) 0.78

P61A mutation in the factor for inversion stimulation results in a thermostable dimeric intermediate. Biochemistry (2005) 0.77

Distinctive interactions in the holoenzyme formation for two isoforms of glutamate decarboxylase. Biochim Biophys Acta (2003) 0.77

Identifying kinetically stable proteins with capillary electrophoresis. Protein Sci (2010) 0.76

Influence of the carboxy terminus of serum amyloid A on protein oligomerization, misfolding, and fibril formation. Biochemistry (2012) 0.76

The role of the local environment of engineered Tyr to Trp substitutions for probing the denaturation mechanism of FIS. Protein Sci (2011) 0.75

A truncated peptide model of the mutant P61A FIS forms a stable dimer. Biochim Biophys Acta (2006) 0.75