Published in Crit Rev Biochem Mol Biol on December 14, 2004
High-resolution mapping of expression-QTLs yields insight into human gene regulation. PLoS Genet (2008) 9.68
A role for eIF4E and eIF4E-transporter in targeting mRNPs to mammalian processing bodies. RNA (2005) 4.99
Comprehensive analysis of transcriptional promoter structure and function in 1% of the human genome. Genome Res (2005) 3.85
Zcchc11-dependent uridylation of microRNA directs cytokine expression. Nat Cell Biol (2009) 2.63
Evaluation of potential reference genes in real-time RT-PCR studies of Atlantic salmon. BMC Mol Biol (2005) 2.60
Base excision repair of oxidative DNA damage and association with cancer and aging. Carcinogenesis (2008) 2.42
Retracted The RNA-binding protein KSRP promotes decay of beta-catenin mRNA and is inactivated by PI3K-AKT signaling. PLoS Biol (2006) 2.42
Analysis of P-body assembly in Saccharomyces cerevisiae. Mol Biol Cell (2007) 2.37
The dynamics of mammalian P body transport, assembly, and disassembly in vivo. Mol Biol Cell (2008) 2.25
P bodies, stress granules, and viral life cycles. Cell Host Microbe (2008) 2.23
Arabidopsis DCP2, DCP1, and VARICOSE form a decapping complex required for postembryonic development. Plant Cell (2006) 2.13
All things must pass: contrasts and commonalities in eukaryotic and bacterial mRNA decay. Nat Rev Mol Cell Biol (2010) 2.07
Whole-genome analysis of mRNA decay in Plasmodium falciparum reveals a global lengthening of mRNA half-life during the intra-erythrocytic development cycle. Genome Biol (2007) 2.03
Widespread use of poly(A) tail length control to accentuate expression of the yeast transcriptome. RNA (2007) 1.99
Deadenylation is prerequisite for P-body formation and mRNA decay in mammalian cells. J Cell Biol (2008) 1.98
Translation drives mRNA quality control. Nat Struct Mol Biol (2012) 1.97
Regulation of eukaryotic gene expression by the untranslated gene regions and other non-coding elements. Cell Mol Life Sci (2012) 1.96
Human TOB, an antiproliferative transcription factor, is a poly(A)-binding protein-dependent positive regulator of cytoplasmic mRNA deadenylation. Mol Cell Biol (2007) 1.85
ZBP1 regulates mRNA stability during cellular stress. J Cell Biol (2006) 1.84
IRE1beta inhibits chylomicron production by selectively degrading MTP mRNA. Cell Metab (2008) 1.75
Mechanisms of deadenylation-dependent decay. Wiley Interdiscip Rev RNA (2010) 1.69
Structural basis of dcp2 recognition and activation by dcp1. Mol Cell (2008) 1.65
Pat1 contains distinct functional domains that promote P-body assembly and activation of decapping. Mol Cell Biol (2007) 1.64
The exoribonuclease Dis3L2 defines a novel eukaryotic RNA degradation pathway. EMBO J (2013) 1.61
3' Terminal oligo U-tract-mediated stimulation of decapping. RNA (2007) 1.59
Identification of a quality-control mechanism for mRNA 5'-end capping. Nature (2010) 1.58
ETHYLENE-INSENSITIVE5 encodes a 5'-->3' exoribonuclease required for regulation of the EIN3-targeting F-box proteins EBF1/2. Proc Natl Acad Sci U S A (2006) 1.56
The decapping activator Lsm1p-7p-Pat1p complex has the intrinsic ability to distinguish between oligoadenylated and polyadenylated RNAs. RNA (2007) 1.54
Poly(A) tail length is controlled by the nuclear poly(A)-binding protein regulating the interaction between poly(A) polymerase and the cleavage and polyadenylation specificity factor. J Biol Chem (2009) 1.54
The BTG2 protein is a general activator of mRNA deadenylation. EMBO J (2008) 1.54
Subunits of the Drosophila CCR4-NOT complex and their roles in mRNA deadenylation. RNA (2010) 1.51
p72 DEAD box RNA helicase is required for optimal function of the zinc-finger antiviral protein. Proc Natl Acad Sci U S A (2008) 1.45
A novel method for poly(A) fractionation reveals a large population of mRNAs with a short poly(A) tail in mammalian cells. Nucleic Acids Res (2007) 1.45
Inhaled corticosteroids as combination therapy with beta-adrenergic agonists in airways disease: present and future. Eur J Clin Pharmacol (2009) 1.40
Storage of cellular 5' mRNA caps in P bodies for viral cap-snatching. Proc Natl Acad Sci U S A (2008) 1.39
Vaccinia virus D10 protein has mRNA decapping activity, providing a mechanism for control of host and viral gene expression. Proc Natl Acad Sci U S A (2007) 1.38
The DEAD-box RNA helicase Ded1p affects and accumulates in Saccharomyces cerevisiae P-bodies. Mol Biol Cell (2007) 1.35
Circadian control of mRNA polyadenylation dynamics regulates rhythmic protein expression. Genes Dev (2012) 1.33
NANOS2 interacts with the CCR4-NOT deadenylation complex and leads to suppression of specific RNAs. Proc Natl Acad Sci U S A (2010) 1.32
Transcriptome-wide analysis of uncapped mRNAs in Arabidopsis reveals regulation of mRNA degradation. Plant Cell (2008) 1.29
A specific role for the C-terminal region of the Poly(A)-binding protein in mRNA decay. Nucleic Acids Res (2007) 1.29
A mammalian pre-mRNA 5' end capping quality control mechanism and an unexpected link of capping to pre-mRNA processing. Mol Cell (2013) 1.25
Crystal structure of human Edc3 and its functional implications. Mol Cell Biol (2008) 1.25
Stable RNA markers for identification of blood and saliva stains revealed from whole genome expression analysis of time-wise degraded samples. Int J Legal Med (2007) 1.24
Structural insight into poly(A) binding and catalytic mechanism of human PARN. EMBO J (2005) 1.24
Endotoxin mediates recruitment of RNA polymerase II to target genes in acute renal failure. J Am Soc Nephrol (2008) 1.23
Human cell growth requires a functional cytoplasmic exosome, which is involved in various mRNA decay pathways. RNA (2007) 1.22
BTG/TOB factors impact deadenylases. Trends Biochem Sci (2009) 1.22
Novel endoribonucleases as central players in various pathways of eukaryotic RNA metabolism. RNA (2010) 1.20
The 3' untranslated region of sindbis virus represses deadenylation of viral transcripts in mosquito and Mammalian cells. J Virol (2007) 1.18
Mutations in gfpt1 and skiv2l2 cause distinct stage-specific defects in larval melanocyte regeneration in zebrafish. PLoS Genet (2007) 1.18
Degradation of mRNAs that lack a stop codon: a decade of nonstop progress. Wiley Interdiscip Rev RNA (2012) 1.16
Time course analysis of RNA stability in human placenta. BMC Mol Biol (2009) 1.15
CIRCADIAN CLOCK ASSOCIATED1 transcript stability and the entrainment of the circadian clock in Arabidopsis. Plant Physiol (2007) 1.14
Mechanism of regulation of bcl-2 mRNA by nucleolin and A+U-rich element-binding factor 1 (AUF1). J Biol Chem (2010) 1.12
Messenger RNA half-life measurements in mammalian cells. Methods Enzymol (2008) 1.11
Arabidopsis deadenylases AtCAF1a and AtCAF1b play overlapping and distinct roles in mediating environmental stress responses. Plant Physiol (2009) 1.08
Dendritic LSm1/CBP80-mRNPs mark the early steps of transport commitment and translational control. J Cell Biol (2009) 1.08
Emerging roles of the nucleolus in regulating the DNA damage response: the noncanonical DNA repair enzyme APE1/Ref-1 as a paradigmatical example. Antioxid Redox Signal (2013) 1.08
Nucleolin stabilizes Bcl-X L messenger RNA in response to UVA irradiation. Cancer Res (2008) 1.05
Scavenger decapping activity facilitates 5' to 3' mRNA decay. Mol Cell Biol (2005) 1.05
Effect of long-term storage in TRIzol on microarray-based gene expression profiling. Cancer Epidemiol Biomarkers Prev (2010) 1.04
Characterization of RNA sequence determinants and antideterminants of processing reactivity for a minimal substrate of Escherichia coli ribonuclease III. Nucleic Acids Res (2006) 1.04
A role for transportin in deposition of TTP to cytoplasmic RNA granules and mRNA decay. Nucleic Acids Res (2009) 1.03
Versatile applications of transcriptional pulsing to study mRNA turnover in mammalian cells. RNA (2007) 1.02
Stability of the LATS2 tumor suppressor gene is regulated by tristetraprolin. J Biol Chem (2010) 1.01
Signatures of host mRNA 5' terminus for efficient hantavirus cap snatching. J Virol (2012) 0.99
Evolutionary conservation supports ancient origin for Nudt16, a nuclear-localized, RNA-binding, RNA-decapping enzyme. Nucleic Acids Res (2008) 0.97
Herpes simplex virus ICP27 is required for virus-induced stabilization of the ARE-containing IEX-1 mRNA encoded by the human IER3 gene. J Virol (2006) 0.97
lsm1 mutations impairing the ability of the Lsm1p-7p-Pat1p complex to preferentially bind to oligoadenylated RNA affect mRNA decay in vivo. RNA (2008) 0.96
Tumor suppressor p53 plays a key role in induction of both tristetraprolin and let-7 in human cancer cells. Nucleic Acids Res (2013) 0.95
CUCU modification of mRNA promotes decapping and transcript degradation in Aspergillus nidulans. Mol Cell Biol (2009) 0.95
LSM proteins provide accurate splicing and decay of selected transcripts to ensure normal Arabidopsis development. Plant Cell (2012) 0.94
Activation of decapping involves binding of the mRNA and facilitation of the post-binding steps by the Lsm1-7-Pat1 complex. RNA (2009) 0.94
Gene expression dynamics in randomly varying environments. J Math Biol (2009) 0.94
Curled encodes the Drosophila homolog of the vertebrate circadian deadenylase Nocturnin. Genetics (2009) 0.93
Selective translational repression of HIV-1 RNA by Sam68DeltaC occurs by altering PABP1 binding to unspliced viral RNA. Retrovirology (2008) 0.93
Host factors that control long terminal repeat retrotransposons in Saccharomyces cerevisiae: implications for regulation of mammalian retroviruses. Eukaryot Cell (2007) 0.92
The neurogenetics of alternative splicing. Nat Rev Neurosci (2016) 0.91
Cannabinoid receptor type 2, but not type 1, is up-regulated in peripheral blood mononuclear cells of children affected by autistic disorders. J Autism Dev Disord (2013) 0.91
Genome-based analysis of Chlamydomonas reinhardtii exoribonucleases and poly(A) polymerases predicts unexpected organellar and exosomal features. Genetics (2008) 0.89
Structural basis for Pan3 binding to Pan2 and its function in mRNA recruitment and deadenylation. EMBO J (2014) 0.89
The RRM domain of poly(A)-specific ribonuclease has a noncanonical binding site for mRNA cap analog recognition. Nucleic Acids Res (2008) 0.88
Elimination of cap structures generated by mRNA decay involves the new scavenger mRNA decapping enzyme Aph1/FHIT together with DcpS. Nucleic Acids Res (2014) 0.88
An integrated in silico approach to design specific inhibitors targeting human poly(a)-specific ribonuclease. PLoS One (2012) 0.87
PolyA-specific ribonuclease (PARN-1) function in stage-specific mRNA turnover in Trypanosoma brucei. Eukaryot Cell (2011) 0.87
Posttranscriptional regulation of gene expression-adding another layer of complexity to the DNA damage response. Front Genet (2012) 0.87
7-methylguanosine diphosphate (m(7)GDP) is not hydrolyzed but strongly bound by decapping scavenger (DcpS) enzymes and potently inhibits their activity. Biochemistry (2012) 0.86
Ectopic expression of a truncated CD40L protein from synthetic post-transcriptionally capped RNA in dendritic cells induces high levels of IL-12 secretion. BMC Mol Biol (2008) 0.86
The critical role of mRNA destabilizing protein heterogeneous nuclear ribonucleoprotein d in 3' untranslated region-mediated decay of low-density lipoprotein receptor mRNA in liver tissue. Arterioscler Thromb Vasc Biol (2013) 0.86
The N terminus of Andes virus L protein suppresses mRNA and protein expression in mammalian cells. J Virol (2013) 0.85
Spatial transcription of CYP1A in fish liver. BMC Physiol (2007) 0.84
General and MicroRNA-Mediated mRNA Degradation Occurs on Ribosome Complexes in Drosophila Cells. Mol Cell Biol (2015) 0.84
A novel posttranscriptional mechanism for dietary cholesterol-mediated suppression of liver LDL receptor expression. J Lipid Res (2014) 0.83
Proteins involved in the degradation of cytoplasmic mRNA in the major eukaryotic model systems. RNA Biol (2014) 0.83
Cytoplasmatic post-transcriptional regulation and intracellular signalling. Mol Genet Genomics (2007) 0.83
A deadenylase assay by size-exclusion chromatography. PLoS One (2012) 0.82
New kid on the ID block: neural functions of the Nab2/ZC3H14 class of Cys₃His tandem zinc-finger polyadenosine RNA binding proteins. RNA Biol (2012) 0.82
Cordycepin interferes with 3' end formation in yeast independently of its potential to terminate RNA chain elongation. RNA (2009) 0.82
Mining Functional Elements in Messenger RNAs: Overview, Challenges, and Perspectives. Front Plant Sci (2011) 0.82
Human Dcp2: a catalytically active mRNA decapping enzyme located in specific cytoplasmic structures. EMBO J (2002) 6.08
A complex containing the CCR4 and CAF1 proteins is involved in mRNA deadenylation in Drosophila. EMBO J (2004) 2.40
Structure and function of poly(A) binding proteins. Biochim Biophys Acta (2004) 2.28
The intranuclear mobility of messenger RNA binding proteins is ATP dependent and temperature sensitive. J Cell Biol (2002) 1.68
Control of c-myc mRNA stability by IGF2BP1-associated cytoplasmic RNPs. RNA (2008) 1.63
Stimulation of poly(A) polymerase through a direct interaction with the nuclear poly(A) binding protein allosterically regulated by RNA. EMBO J (2003) 1.55
Poly(A) tail length is controlled by the nuclear poly(A)-binding protein regulating the interaction between poly(A) polymerase and the cleavage and polyadenylation specificity factor. J Biol Chem (2009) 1.54
An essential cytoplasmic function for the nuclear poly(A) binding protein, PABP2, in poly(A) tail length control and early development in Drosophila. Dev Cell (2005) 1.53
Subunits of the Drosophila CCR4-NOT complex and their roles in mRNA deadenylation. RNA (2010) 1.51
Control of poly(A) tail length. Wiley Interdiscip Rev RNA (2010) 1.41
Control of poly(A) polymerase level is essential to cytoplasmic polyadenylation and early development in Drosophila. EMBO J (2002) 1.29
The RNA binding domains of the nuclear poly(A)-binding protein. J Biol Chem (2003) 1.27
Structural insight into poly(A) binding and catalytic mechanism of human PARN. EMBO J (2005) 1.24
Maturation of mammalian H/ACA box snoRNAs: PAPD5-dependent adenylation and PARN-dependent trimming. RNA (2012) 1.22
Asymmetric arginine dimethylation of heterogeneous nuclear ribonucleoprotein K by protein-arginine methyltransferase 1 inhibits its interaction with c-Src. J Biol Chem (2006) 1.13
Smaug assembles an ATP-dependent stable complex repressing nanos mRNA translation at multiple levels. EMBO J (2010) 1.07
Rapid ATP-dependent deadenylation of nanos mRNA in a cell-free system from Drosophila embryos. J Biol Chem (2006) 1.06
Degradation of hsp70 and other mRNAs in Drosophila via the 5' 3' pathway and its regulation by heat shock. J Biol Chem (2007) 1.06
The Drosophila melanogaster Gene cg4930 Encodes a High Affinity Inhibitor for Endonuclease G. J Biol Chem (2009) 1.05
Keratin 8 phosphorylation regulates keratin reorganization and migration of epithelial tumor cells. J Cell Sci (2012) 1.04
Promiscuous modification of the nuclear poly(A)-binding protein by multiple protein-arginine methyltransferases does not affect the aggregation behavior. J Biol Chem (2008) 1.02
Trinucleotide expansions leading to an extended poly-L-alanine segment in the poly (A) binding protein PABPN1 cause fibril formation. Protein Sci (2003) 0.95
Type I Arginine Methyltransferases PRMT1 and PRMT-3 Act Distributively. J Biol Chem (2009) 0.95
Equilibrium studies on the association of the nuclear poly(A) binding protein with poly(A) of different lengths. Biochemistry (2002) 0.89
Crystal structure of the EndoG/EndoGI complex: mechanism of EndoG inhibition. Nucleic Acids Res (2009) 0.87
Hofmeister salts and potential therapeutic compounds accelerate in vitro fibril formation of the N-terminal domain of PABPN1 containing a disease-causing alanine extension. Biochemistry (2008) 0.87
Arginine methylation of the nuclear poly(a) binding protein weakens the interaction with its nuclear import receptor, transportin. J Biol Chem (2011) 0.83
Cell-free deadenylation assays with Drosophila embryo extracts. Methods Enzymol (2008) 0.81
Identification of Drosophila and human 7-methyl GMP-specific nucleotidases. J Biol Chem (2012) 0.81
Biophysical and biochemical analysis of hnRNP K: arginine methylation, reversible aggregation and combinatorial binding to nucleic acids. Biol Chem (2014) 0.79
Smaug destroys a huge treasure. Genome Biol (2014) 0.77
Wrong PH for RNA degradation. Nat Struct Mol Biol (2007) 0.77
Peptide backbone conformation affects the substrate preference of protein arginine methyltransferase I. Biochemistry (2012) 0.77
Simple methods for the 3' biotinylation of RNA. RNA (2014) 0.75
Assaying mRNA deadenylation in vitro. Methods Mol Biol (2014) 0.75
Assaying mRNA deadenylation in vivo. Methods Mol Biol (2014) 0.75