Published in Int J Syst Evol Microbiol on January 01, 2005
New insights into myosin evolution and classification. Proc Natl Acad Sci U S A (2006) 2.97
RXLR-mediated entry of Phytophthora sojae effector Avr1b into soybean cells does not require pathogen-encoded machinery. Plant Cell (2008) 2.72
Phylogenomics reshuffles the eukaryotic supergroups. PLoS One (2007) 2.67
The evolutionary history of haptophytes and cryptophytes: phylogenomic evidence for separate origins. Proc Biol Sci (2012) 2.12
Multiple genes of apparent algal origin suggest ciliates may once have been photosynthetic. Curr Biol (2008) 1.95
The evolutionary phylogeny of the oomycete "fungi". Protoplasma (2011) 1.91
The origin and diversification of eukaryotes: problems with molecular phylogenetics and molecular clock estimation. Philos Trans R Soc Lond B Biol Sci (2006) 1.71
An exceptional horizontal gene transfer in plastids: gene replacement by a distant bacterial paralog and evidence that haptophyte and cryptophyte plastids are sisters. BMC Biol (2006) 1.58
Signal-mediated export of proteins from the malaria parasite to the host erythrocyte. J Cell Biol (2005) 1.57
Evaluating support for the current classification of eukaryotic diversity. PLoS Genet (2006) 1.55
Defining DNA-based operational taxonomic units for microbial-eukaryote ecology. Appl Environ Microbiol (2009) 1.44
Toxoplasma gondii scavenges host-derived lipoic acid despite its de novo synthesis in the apicoplast. EMBO J (2006) 1.42
Broadly sampled multigene trees of eukaryotes. BMC Evol Biol (2008) 1.32
Twinkle, the mitochondrial replicative DNA helicase, is widespread in the eukaryotic radiation and may also be the mitochondrial DNA primase in most eukaryotes. J Mol Evol (2006) 1.28
Molecular phylogeny and description of the novel katablepharid Roombia truncata gen. et sp. nov., and establishment of the Hacrobia taxon nov. PLoS One (2009) 1.24
Telonemia, a new protist phylum with affinity to chromist lineages. Proc Biol Sci (2006) 1.21
The eukaryotic tree of life from a global phylogenomic perspective. Cold Spring Harb Perspect Biol (2014) 1.20
Single, ancient origin of a plastid metabolite translocator family in Plantae from an endomembrane-derived ancestor. Eukaryot Cell (2006) 1.18
Red and problematic green phylogenetic signals among thousands of nuclear genes from the photosynthetic and apicomplexa-related Chromera velia. Genome Biol Evol (2011) 1.15
Rampant polyuridylylation of plastid gene transcripts in the dinoflagellate Lingulodinium. Nucleic Acids Res (2006) 1.09
Analysis of rare genomic changes does not support the unikont-bikont phylogeny and suggests cyanobacterial symbiosis as the point of primary radiation of eukaryotes. Genome Biol Evol (2009) 1.05
Nature of the periplastidial pathway of starch synthesis in the cryptophyte Guillardia theta. Eukaryot Cell (2006) 0.99
ERAD components in organisms with complex red plastids suggest recruitment of a preexisting protein transport pathway for the periplastid membrane. Genome Biol Evol (2010) 0.97
The dinoflagellates Durinskia baltica and Kryptoperidinium foliaceum retain functionally overlapping mitochondria from two evolutionarily distinct lineages. BMC Evol Biol (2007) 0.97
Direct phylogenetic evidence for lateral transfer of elongation factor-like gene. Proc Natl Acad Sci U S A (2008) 0.95
More membranes, more proteins: complex protein import mechanisms into secondary plastids. Protist (2010) 0.92
Molecular systematics and the diatom species. Protist (2008) 0.91
Evidence for small RNAs homologous to effector-encoding genes and transposable elements in the oomycete Phytophthora infestans. PLoS One (2012) 0.89
The heterotrophic dinoflagellate Crypthecodinium cohnii defines a model genetic system to investigate cytoplasmic starch synthesis. Eukaryot Cell (2008) 0.86
An external delta-carbonic anhydrase in a free-living marine dinoflagellate may circumvent diffusion-limited carbon acquisition. Plant Physiol (2008) 0.83
Transcriptomic characterisation and genomic glimps into the toxigenic dinoflagellate Azadinium spinosum, with emphasis on polykeitde synthase genes. BMC Genomics (2015) 0.83
Evidence for local ciliate endemism in an alpine anoxic lake. Microb Ecol (2007) 0.83
Production of dsRNA sequences in the host plant is not sufficient to initiate gene silencing in the colonizing oomycete pathogen Phytophthora parasitica. PLoS One (2011) 0.82
Protein sorting in complex plastids. Biochim Biophys Acta (2012) 0.82
The largest subunit of RNA polymerase II from the Glaucocystophyta: functional constraint and short-branch exclusion in deep eukaryotic phylogeny. BMC Evol Biol (2005) 0.82
The mitochondrial and chloroplast genomes of the haptophyte Chrysochromulina tobin contain unique repeat structures and gene profiles. BMC Genomics (2014) 0.81
Retrotransposons and tandem repeat sequences in the nuclear genomes of cryptomonad algae. J Mol Evol (2007) 0.81
A hypothesis for the evolution of nuclear-encoded, plastid-targeted glyceraldehyde-3-phosphate dehydrogenase genes in "chromalveolate" members. PLoS One (2009) 0.78
Phylogenomics-based reconstruction of protozoan species tree. Evol Bioinform Online (2011) 0.78
Dinoflagellate Gene Structure and Intron Splice Sites in a Genomic Tandem Array. J Eukaryot Microbiol (2015) 0.77
Phylogeny of dinoflagellate plastid genes recently transferred to the nucleus supports a common ancestry with red algal plastid genes. J Mol Evol (2008) 0.77
Phylogenetic and transcriptional analysis of an expanded bZIP transcription factor family in Phytophthora sojae. BMC Genomics (2013) 0.76
Phylogenomic Reconstruction of the Oomycete Phylogeny Derived from 37 Genomes. mSphere (2017) 0.75
Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote. PLoS Biol (2006) 5.44
A common red algal origin of the apicomplexan, dinoflagellate, and heterokont plastids. Proc Natl Acad Sci U S A (2010) 2.41
Independent prognostic value of BCR-ABL1-like signature and IKZF1 deletion, but not high CRLF2 expression, in children with B-cell precursor ALL. Blood (2013) 2.34
Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs. Nature (2012) 2.15
The evolutionary history of haptophytes and cryptophytes: phylogenomic evidence for separate origins. Proc Biol Sci (2012) 2.12
Microsporidia evolved from ancestral sexual fungi. Curr Biol (2008) 2.11
The complete chloroplast genome of the chlorarachniophyte Bigelowiella natans: evidence for independent origins of chlorarachniophyte and euglenid secondary endosymbionts. Mol Biol Evol (2006) 1.99
Large-scale phylogenomic analyses reveal that two enigmatic protist lineages, telonemia and centroheliozoa, are related to photosynthetic chromalveolates. Genome Biol Evol (2009) 1.89
Lateral gene transfer and the evolution of plastid-targeted proteins in the secondary plastid-containing alga Bigelowiella natans. Proc Natl Acad Sci U S A (2003) 1.87
Cell biology. Irremediable complexity? Science (2010) 1.85
CBOL protist working group: barcoding eukaryotic richness beyond the animal, plant, and fungal kingdoms. PLoS Biol (2012) 1.84
The complete sequence of the smallest known nuclear genome from the microsporidian Encephalitozoon intestinalis. Nat Commun (2010) 1.75
Genomic survey of the non-cultivatable opportunistic human pathogen, Enterocytozoon bieneusi. PLoS Pathog (2009) 1.73
Evidence that plant-like genes in Chlamydia species reflect an ancestral relationship between Chlamydiaceae, cyanobacteria, and the chloroplast. Genome Res (2002) 1.72
Late recurrence of childhood T-cell acute lymphoblastic leukemia frequently represents a second leukemia rather than a relapse: first evidence for genetic predisposition. J Clin Oncol (2011) 1.71
Complete nucleotide sequence of the chlorarachniophyte nucleomorph: nature's smallest nucleus. Proc Natl Acad Sci U S A (2006) 1.70
Global distribution of a wild alga revealed by targeted metagenomics. Curr Biol (2012) 1.64
Secondary, somatic mutations might promote cyst formation in patients with autosomal dominant polycystic liver disease. Gastroenterology (2011) 1.58
Mammaglobin is associated with low-grade, steroid receptor-positive breast tumors from postmenopausal patients, and has independent prognostic value for relapse-free survival time. J Clin Oncol (2004) 1.55
Recycled plastids: a 'green movement' in eukaryotic evolution. Trends Genet (2002) 1.49
Multiple gene phylogenies support the monophyly of cryptomonad and haptophyte host lineages. Curr Biol (2007) 1.49
Nucleus- and nucleomorph-targeted histone proteins in a chlorarachniophyte alga. Mol Microbiol (2011) 1.45
A high frequency of overlapping gene expression in compacted eukaryotic genomes. Proc Natl Acad Sci U S A (2005) 1.43
Gene replacement of fructose-1,6-bisphosphate aldolase supports the hypothesis of a single photosynthetic ancestor of chromalveolates. Eukaryot Cell (2004) 1.43
Phylogenomics of the intracellular parasite Mikrocytos mackini reveals evidence for a mitosome in rhizaria. Curr Biol (2013) 1.42
Complex protein targeting to dinoflagellate plastids. J Mol Biol (2005) 1.41
Nucleus-encoded, plastid-targeted glyceraldehyde-3-phosphate dehydrogenase (GAPDH) indicates a single origin for chromalveolate plastids. Mol Biol Evol (2003) 1.39
Evolution of Rhizaria: new insights from phylogenomic analysis of uncultivated protists. BMC Evol Biol (2010) 1.39
Plastid-derived genes in the nonphotosynthetic alveolate Oxyrrhis marina. Mol Biol Evol (2008) 1.31
The complete plastid genome sequence of the parasitic green alga Helicosporidium sp. is highly reduced and structured. BMC Biol (2006) 1.31
Genome compaction and stability in microsporidian intracellular parasites. Curr Biol (2004) 1.28
How a neutral evolutionary ratchet can build cellular complexity. IUBMB Life (2011) 1.28
Molecular phylogeny and description of the novel katablepharid Roombia truncata gen. et sp. nov., and establishment of the Hacrobia taxon nov. PLoS One (2009) 1.24
Evolution of the sex-related locus and genomic features shared in microsporidia and fungi. PLoS One (2010) 1.23
Cascades of convergent evolution: the corresponding evolutionary histories of euglenozoans and dinoflagellates. Proc Natl Acad Sci U S A (2009) 1.23
A tertiary plastid uses genes from two endosymbionts. J Mol Biol (2006) 1.22
The highly reduced and fragmented mitochondrial genome of the early-branching dinoflagellate Oxyrrhis marina shares characteristics with both apicomplexan and dinoflagellate mitochondrial genomes. J Mol Biol (2007) 1.21
First complete mitochondrial genome sequence from a box jellyfish reveals a highly fragmented linear architecture and insights into telomere evolution. Genome Biol Evol (2011) 1.20
Microsporidian mitosomes retain elements of the general mitochondrial targeting system. Proc Natl Acad Sci U S A (2006) 1.19
Re-examining alveolate evolution using multiple protein molecular phylogenies. J Eukaryot Microbiol (2002) 1.17
A bacterial proteorhodopsin proton pump in marine eukaryotes. Nat Commun (2011) 1.17
Multiple protein phylogenies show that Oxyrrhis marina and Perkinsus marinus are early branches of the dinoflagellate lineage. Int J Syst Evol Microbiol (2003) 1.17
Widespread recycling of processed cDNAs in dinoflagellates. Curr Biol (2008) 1.17
Patterns of genome evolution among the microsporidian parasites Encephalitozoon cuniculi, Antonospora locustae and Enterocytozoon bieneusi. PLoS One (2007) 1.16
Draft genome sequence of the Daphnia pathogen Octosporea bayeri: insights into the gene content of a large microsporidian genome and a model for host-parasite interactions. Genome Biol (2009) 1.16
Genome sequence surveys of Brachiola algerae and Edhazardia aedis reveal microsporidia with low gene densities. BMC Genomics (2008) 1.16
The complete plastid genomes of the two 'dinotoms' Durinskia baltica and Kryptoperidinium foliaceum. PLoS One (2010) 1.16
Lateral gene transfer of a multigene region from cyanobacteria to dinoflagellates resulting in a novel plastid-targeted fusion protein. Mol Biol Evol (2006) 1.14
Comparative profiling of overlapping transcription in the compacted genomes of microsporidia Antonospora locustae and Encephalitozoon cuniculi. Genomics (2008) 1.13
Molecular and morphological analysis of the family Calonymphidae with a description of Calonympha chia sp. nov., Snyderella kirbyi sp. nov., Snyderella swezyae sp. nov. and Snyderella yamini sp. nov. Int J Syst Evol Microbiol (2010) 1.13
Bacterial catalase in the microsporidian Nosema locustae: implications for microsporidian metabolism and genome evolution. Eukaryot Cell (2003) 1.10
A novel polyubiquitin structure in Cercozoa and Foraminifera: evidence for a new eukaryotic supergroup. Mol Biol Evol (2003) 1.10
Phylogeny of gregarines (Apicomplexa) as inferred from small-subunit rDNA and beta-tubulin. Int J Syst Evol Microbiol (2003) 1.08
Collodictyon--an ancient lineage in the tree of eukaryotes. Mol Biol Evol (2012) 1.08
Gain and loss of multiple functionally related, horizontally transferred genes in the reduced genomes of two microsporidian parasites. Proc Natl Acad Sci U S A (2012) 1.08
Comparative genomics of parasitic silkworm microsporidia reveal an association between genome expansion and host adaptation. BMC Genomics (2013) 1.07
Cryptic organelles in parasitic protists and fungi. Adv Parasitol (2003) 1.07
Congenital disorders of glycosylation in hepatology: the example of polycystic liver disease. J Hepatol (2009) 1.06
Morphology and ultrastructure of multiple life cycle stages of the photosynthetic relative of apicomplexa, Chromera velia. Protist (2011) 1.06
Broad genomic and transcriptional analysis reveals a highly derived genome in dinoflagellate mitochondria. BMC Biol (2007) 1.06
Nucleus-to-nucleus gene transfer and protein retargeting into a remnant cytoplasm of cryptophytes and diatoms. Mol Biol Evol (2006) 1.06
Nuclear genome sequence survey of the Dinoflagellate Heterocapsa triquetra. J Eukaryot Microbiol (2009) 1.06
Re-evaluating the green versus red signal in eukaryotes with secondary plastid of red algal origin. Genome Biol Evol (2012) 1.05
The GC-rich mitochondrial and plastid genomes of the green alga Coccomyxa give insight into the evolution of organelle DNA nucleotide landscape. PLoS One (2011) 1.03
Distinct localization patterns of two putative mitochondrial proteins in the microsporidian Encephalitozoon cuniculi. J Eukaryot Microbiol (2008) 1.02
Global analysis of plastid diversity reveals apicomplexan-related lineages in coral reefs. Curr Biol (2012) 1.02
Actin and ubiquitin protein sequences support a cercozoan/foraminiferan ancestry for the plasmodiophorid plant pathogens. J Eukaryot Microbiol (2004) 1.02
Environmental barcoding reveals massive dinoflagellate diversity in marine environments. PLoS One (2010) 1.02
Complex distribution of EFL and EF-1alpha proteins in the green algal lineage. BMC Evol Biol (2007) 1.01
Molecular phylogeny and surface morphology of Colpodella edax (Alveolata): insights into the phagotrophic ancestry of apicomplexans. J Eukaryot Microbiol (2003) 1.01
Evolution of red algal plastid genomes: ancient architectures, introns, horizontal gene transfer, and taxonomic utility of plastid markers. PLoS One (2013) 1.01
Pyruvate-phosphate dikinase of oxymonads and parabasalia and the evolution of pyrophosphate-dependent glycolysis in anaerobic eukaryotes. Eukaryot Cell (2006) 0.98
Patterns that define the four domains conserved in known and novel isoforms of the protein import receptor Tom20. J Mol Biol (2005) 0.98
Transfer of Nosema locustae (Microsporidia) to Antonospora locustae n. comb. based on molecular and ultrastructural data. J Eukaryot Microbiol (2004) 0.98
A complex and punctate distribution of three eukaryotic genes derived by lateral gene transfer. BMC Evol Biol (2007) 0.98
The phylogeny of colpodellids (Alveolata) using small subunit rRNA gene sequences suggests they are the free-living sister group to apicomplexans. J Eukaryot Microbiol (2002) 0.98
Nucleus-encoded genes for plastid-targeted proteins in Helicosporidium: functional diversity of a cryptic plastid in a parasitic alga. Eukaryot Cell (2004) 0.98
The dinoflagellates Durinskia baltica and Kryptoperidinium foliaceum retain functionally overlapping mitochondria from two evolutionarily distinct lineages. BMC Evol Biol (2007) 0.97
EFL GTPase in cryptomonads and the distribution of EFL and EF-1alpha in chromalveolates. Protist (2006) 0.96
The mitochondrial genome of the entomoparasitic green alga helicosporidium. PLoS One (2010) 0.96
Lateral transfer and recompartmentalization of Calvin cycle enzymes of plants and algae. J Mol Evol (2004) 0.96
A broad distribution of the alternative oxidase in microsporidian parasites. PLoS Pathog (2010) 0.95
Evaluating the ribosomal internal transcribed spacer (ITS) as a candidate dinoflagellate barcode marker. PLoS One (2012) 0.95
Foraminifera and Cercozoa share a common origin according to RNA polymerase II phylogenies. Int J Syst Evol Microbiol (2003) 0.95
BTG1 regulates glucocorticoid receptor autoinduction in acute lymphoblastic leukemia. Blood (2010) 0.94
A high density of ancient spliceosomal introns in oxymonad excavates. BMC Evol Biol (2006) 0.94
Organelle genome complexity scales positively with organism size in volvocine green algae. Mol Biol Evol (2013) 0.94
Morphology and phylogenetic position of Eucomonympha imla (Parabasalia: Hypermastigida). J Eukaryot Microbiol (2007) 0.94
Tetrapyrrole synthesis of photosynthetic chromerids is likely homologous to the unusual pathway of apicomplexan parasites. Plant Cell (2011) 0.93
Horizontal transfer of a eukaryotic plastid-targeted protein gene to cyanobacteria. BMC Biol (2007) 0.93
Comment on "A green algal apicoplast ancestor". Science (2003) 0.93
Split photosystem protein, linear-mapping topology, and growth of structural complexity in the plastid genome of Chromera velia. Mol Biol Evol (2013) 0.92
Identification of plant-like galactolipids in Chromera velia, a photosynthetic relative of malaria parasites. J Biol Chem (2011) 0.92
The search for the missing link: a relic plastid in Perkinsus? Int J Parasitol (2011) 0.92
The RAB family GTPase Rab1A from Plasmodium falciparum defines a unique paralog shared by chromalveolates and rhizaria. J Eukaryot Microbiol (2009) 0.91
Symbiotic innovation in the oxymonad Streblomastix strix. J Eukaryot Microbiol (2004) 0.91
Class II photolyase in a microsporidian intracellular parasite. J Mol Biol (2004) 0.91
Complete genome sequences from three genetically distinct strains reveal high intraspecies genetic diversity in the microsporidian Encephalitozoon cuniculi. Eukaryot Cell (2013) 0.90
Relative rates of evolution among the three genetic compartments of the red alga Porphyra differ from those of green plants and do not correlate with genome architecture. Mol Phylogenet Evol (2012) 0.90
Endosymbiotic gene transfer in tertiary plastid-containing dinoflagellates. Eukaryot Cell (2013) 0.89