Published in BMC Evol Biol on June 11, 2007
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A class of eukaryotic GTPase with a punctate distribution suggesting multiple functional replacements of translation elongation factor 1alpha. Proc Natl Acad Sci U S A (2004) 1.32
Evidence for lateral transfer of genes encoding ferredoxins, nitroreductases, NADH oxidase, and alcohol dehydrogenase 3 from anaerobic prokaryotes to Giardia lamblia and Entamoeba histolytica. Eukaryot Cell (2002) 1.21
Evolution of four gene families with patchy phylogenetic distributions: influx of genes into protist genomes. BMC Evol Biol (2006) 1.17
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Lateral gene transfer of a multigene region from cyanobacteria to dinoflagellates resulting in a novel plastid-targeted fusion protein. Mol Biol Evol (2006) 1.14
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Gene transfers from nanoarchaeota to an ancestor of diplomonads and parabasalids. Mol Biol Evol (2004) 1.13
A novel polyubiquitin structure in Cercozoa and Foraminifera: evidence for a new eukaryotic supergroup. Mol Biol Evol (2003) 1.10
The presence of a haloarchaeal type tyrosyl-tRNA synthetase marks the opisthokonts as monophyletic. Mol Biol Evol (2005) 1.09
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Cyanophora paradoxa genome elucidates origin of photosynthesis in algae and plants. Science (2012) 2.93
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A common red algal origin of the apicomplexan, dinoflagellate, and heterokont plastids. Proc Natl Acad Sci U S A (2010) 2.41
A phylogenomic investigation into the origin of metazoa. Mol Biol Evol (2008) 2.32
Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs. Nature (2012) 2.15
The evolutionary history of haptophytes and cryptophytes: phylogenomic evidence for separate origins. Proc Biol Sci (2012) 2.12
Microsporidia evolved from ancestral sexual fungi. Curr Biol (2008) 2.11
The complete chloroplast genome of the chlorarachniophyte Bigelowiella natans: evidence for independent origins of chlorarachniophyte and euglenid secondary endosymbionts. Mol Biol Evol (2006) 1.99
Strikingly bacteria-like and gene-rich mitochondrial genomes throughout jakobid protists. Genome Biol Evol (2013) 1.90
The origins of multicellularity: a multi-taxon genome initiative. Trends Genet (2007) 1.90
Large-scale phylogenomic analyses reveal that two enigmatic protist lineages, telonemia and centroheliozoa, are related to photosynthetic chromalveolates. Genome Biol Evol (2009) 1.89
Lateral gene transfer and the evolution of plastid-targeted proteins in the secondary plastid-containing alga Bigelowiella natans. Proc Natl Acad Sci U S A (2003) 1.87
A regulatory toolbox of MiniPromoters to drive selective expression in the brain. Proc Natl Acad Sci U S A (2010) 1.85
Cell biology. Irremediable complexity? Science (2010) 1.85
CBOL protist working group: barcoding eukaryotic richness beyond the animal, plant, and fungal kingdoms. PLoS Biol (2012) 1.84
tRNAHis maturation: an essential yeast protein catalyzes addition of a guanine nucleotide to the 5' end of tRNAHis. Genes Dev (2003) 1.78
Toward resolving the eukaryotic tree: the phylogenetic positions of jakobids and cercozoans. Curr Biol (2007) 1.76
The complete sequence of the smallest known nuclear genome from the microsporidian Encephalitozoon intestinalis. Nat Commun (2010) 1.75
Genomic survey of the non-cultivatable opportunistic human pathogen, Enterocytozoon bieneusi. PLoS Pathog (2009) 1.73
Evidence that plant-like genes in Chlamydia species reflect an ancestral relationship between Chlamydiaceae, cyanobacteria, and the chloroplast. Genome Res (2002) 1.72
Complete nucleotide sequence of the chlorarachniophyte nucleomorph: nature's smallest nucleus. Proc Natl Acad Sci U S A (2006) 1.70
Global distribution of a wild alga revealed by targeted metagenomics. Curr Biol (2012) 1.64
On the monophyly of chromalveolates using a six-protein phylogeny of eukaryotes. Int J Syst Evol Microbiol (2005) 1.56
TBestDB: a taxonomically broad database of expressed sequence tags (ESTs). Nucleic Acids Res (2007) 1.55
Widespread and extensive editing of mitochondrial mRNAS in dinoflagellates. J Mol Biol (2002) 1.50
Recycled plastids: a 'green movement' in eukaryotic evolution. Trends Genet (2002) 1.49
Multiple gene phylogenies support the monophyly of cryptomonad and haptophyte host lineages. Curr Biol (2007) 1.49
Problems with co-funding in Canada. Science (2005) 1.48
Unique mitochondrial genome architecture in unicellular relatives of animals. Proc Natl Acad Sci U S A (2003) 1.47
Tracing the evolution of the light-harvesting antennae in chlorophyll a/b-containing organisms. Plant Physiol (2007) 1.47
Nucleus- and nucleomorph-targeted histone proteins in a chlorarachniophyte alga. Mol Microbiol (2011) 1.45
A high frequency of overlapping gene expression in compacted eukaryotic genomes. Proc Natl Acad Sci U S A (2005) 1.43
Gene replacement of fructose-1,6-bisphosphate aldolase supports the hypothesis of a single photosynthetic ancestor of chromalveolates. Eukaryot Cell (2004) 1.43
Phylogenomics of the intracellular parasite Mikrocytos mackini reveals evidence for a mitosome in rhizaria. Curr Biol (2013) 1.42
Complex protein targeting to dinoflagellate plastids. J Mol Biol (2005) 1.41
Nucleus-encoded, plastid-targeted glyceraldehyde-3-phosphate dehydrogenase (GAPDH) indicates a single origin for chromalveolate plastids. Mol Biol Evol (2003) 1.39
Evolution of Rhizaria: new insights from phylogenomic analysis of uncultivated protists. BMC Evol Biol (2010) 1.39
Bacteriophage origins of mitochondrial replication and transcription proteins. Trends Genet (2005) 1.38
An early evolutionary origin for the minor spliceosome. Nature (2006) 1.34
Plastid-derived genes in the nonphotosynthetic alveolate Oxyrrhis marina. Mol Biol Evol (2008) 1.31
The complete plastid genome sequence of the parasitic green alga Helicosporidium sp. is highly reduced and structured. BMC Biol (2006) 1.31
Genome compaction and stability in microsporidian intracellular parasites. Curr Biol (2004) 1.28
How a neutral evolutionary ratchet can build cellular complexity. IUBMB Life (2011) 1.28
Twinkle, the mitochondrial replicative DNA helicase, is widespread in the eukaryotic radiation and may also be the mitochondrial DNA primase in most eukaryotes. J Mol Evol (2006) 1.28
Molecular phylogeny and description of the novel katablepharid Roombia truncata gen. et sp. nov., and establishment of the Hacrobia taxon nov. PLoS One (2009) 1.24
Structural and functional diversification of the light-harvesting complexes in photosynthetic eukaryotes. Photosynth Res (2010) 1.24
Evolution of the sex-related locus and genomic features shared in microsporidia and fungi. PLoS One (2010) 1.23
Cascades of convergent evolution: the corresponding evolutionary histories of euglenozoans and dinoflagellates. Proc Natl Acad Sci U S A (2009) 1.23
A tertiary plastid uses genes from two endosymbionts. J Mol Biol (2006) 1.22
The highly reduced and fragmented mitochondrial genome of the early-branching dinoflagellate Oxyrrhis marina shares characteristics with both apicomplexan and dinoflagellate mitochondrial genomes. J Mol Biol (2007) 1.21
First complete mitochondrial genome sequence from a box jellyfish reveals a highly fragmented linear architecture and insights into telomere evolution. Genome Biol Evol (2011) 1.20
Microsporidian mitosomes retain elements of the general mitochondrial targeting system. Proc Natl Acad Sci U S A (2006) 1.19
In vitro characterization of a tRNA editing activity in the mitochondria of Spizellomyces punctatus, a Chytridiomycete fungus. J Biol Chem (2004) 1.18
Re-examining alveolate evolution using multiple protein molecular phylogenies. J Eukaryot Microbiol (2002) 1.17
The ancient and widespread nature of the ER-mitochondria encounter structure. Mol Biol Evol (2013) 1.17
A bacterial proteorhodopsin proton pump in marine eukaryotes. Nat Commun (2011) 1.17
Widespread recycling of processed cDNAs in dinoflagellates. Curr Biol (2008) 1.17
Multiple protein phylogenies show that Oxyrrhis marina and Perkinsus marinus are early branches of the dinoflagellate lineage. Int J Syst Evol Microbiol (2003) 1.17
Patterns of genome evolution among the microsporidian parasites Encephalitozoon cuniculi, Antonospora locustae and Enterocytozoon bieneusi. PLoS One (2007) 1.16
Draft genome sequence of the Daphnia pathogen Octosporea bayeri: insights into the gene content of a large microsporidian genome and a model for host-parasite interactions. Genome Biol (2009) 1.16
Genome sequence surveys of Brachiola algerae and Edhazardia aedis reveal microsporidia with low gene densities. BMC Genomics (2008) 1.16
The complete plastid genomes of the two 'dinotoms' Durinskia baltica and Kryptoperidinium foliaceum. PLoS One (2010) 1.16
Lateral gene transfer of a multigene region from cyanobacteria to dinoflagellates resulting in a novel plastid-targeted fusion protein. Mol Biol Evol (2006) 1.14
An ancient spliceosomal intron in the ribosomal protein L7a gene (Rpl7a) of Giardia lamblia. BMC Evol Biol (2005) 1.14
Sulfate assimilation in eukaryotes: fusions, relocations and lateral transfers. BMC Evol Biol (2008) 1.13
Comparative profiling of overlapping transcription in the compacted genomes of microsporidia Antonospora locustae and Encephalitozoon cuniculi. Genomics (2008) 1.13
Molecular and morphological analysis of the family Calonymphidae with a description of Calonympha chia sp. nov., Snyderella kirbyi sp. nov., Snyderella swezyae sp. nov. and Snyderella yamini sp. nov. Int J Syst Evol Microbiol (2010) 1.13
Bacterial catalase in the microsporidian Nosema locustae: implications for microsporidian metabolism and genome evolution. Eukaryot Cell (2003) 1.10
A novel polyubiquitin structure in Cercozoa and Foraminifera: evidence for a new eukaryotic supergroup. Mol Biol Evol (2003) 1.10
Phylogeny of gregarines (Apicomplexa) as inferred from small-subunit rDNA and beta-tubulin. Int J Syst Evol Microbiol (2003) 1.08
Collodictyon--an ancient lineage in the tree of eukaryotes. Mol Biol Evol (2012) 1.08
Gain and loss of multiple functionally related, horizontally transferred genes in the reduced genomes of two microsporidian parasites. Proc Natl Acad Sci U S A (2012) 1.08
Comparative genomics of parasitic silkworm microsporidia reveal an association between genome expansion and host adaptation. BMC Genomics (2013) 1.07
Cryptic organelles in parasitic protists and fungi. Adv Parasitol (2003) 1.07
Morphology and ultrastructure of multiple life cycle stages of the photosynthetic relative of apicomplexa, Chromera velia. Protist (2011) 1.06
Broad genomic and transcriptional analysis reveals a highly derived genome in dinoflagellate mitochondria. BMC Biol (2007) 1.06
Nucleus-to-nucleus gene transfer and protein retargeting into a remnant cytoplasm of cryptophytes and diatoms. Mol Biol Evol (2006) 1.06
Nuclear genome sequence survey of the Dinoflagellate Heterocapsa triquetra. J Eukaryot Microbiol (2009) 1.06
Doing it in reverse: 3'-to-5' polymerization by the Thg1 superfamily. RNA (2012) 1.05
Re-evaluating the green versus red signal in eukaryotes with secondary plastid of red algal origin. Genome Biol Evol (2012) 1.05
Exploring the mitochondrial proteome of the ciliate protozoon Tetrahymena thermophila: direct analysis by tandem mass spectrometry. J Mol Biol (2007) 1.03
The GC-rich mitochondrial and plastid genomes of the green alga Coccomyxa give insight into the evolution of organelle DNA nucleotide landscape. PLoS One (2011) 1.03
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Gene discovery in the Acanthamoeba castellanii genome. Protist (2005) 1.02
Environmental barcoding reveals massive dinoflagellate diversity in marine environments. PLoS One (2010) 1.02
Complex distribution of EFL and EF-1alpha proteins in the green algal lineage. BMC Evol Biol (2007) 1.01