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1
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The genome of a songbird.
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Nature
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2010
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5.90
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2
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A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms.
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Nature
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2004
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5.24
|
|
3
|
Rescue of a severely bottlenecked wolf (Canis lupus) population by a single immigrant.
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Proc Biol Sci
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2003
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2.76
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4
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Genes of domestic mammals augmented by backcrossing with wild ancestors.
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Trends Genet
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2005
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2.04
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5
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Male-biased mutation rate and divergence in autosomal, z-linked and w-linked introns of chicken and Turkey.
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Mol Biol Evol
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2004
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2.01
|
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6
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Cattle domestication in the Near East was followed by hybridization with aurochs bulls in Europe.
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Proc Biol Sci
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2005
|
2.01
|
|
7
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Evolutionary strata on the chicken Z chromosome: implications for sex chromosome evolution.
|
Genetics
|
2004
|
1.80
|
|
8
|
Prehistoric contacts over the Straits of Gibraltar indicated by genetic analysis of Iberian Bronze Age cattle.
|
Proc Natl Acad Sci U S A
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2005
|
1.74
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|
9
|
Comparison of the chicken and turkey genomes reveals a higher rate of nucleotide divergence on microchromosomes than macrochromosomes.
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Genome Res
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2004
|
1.73
|
|
10
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The recombination landscape of the zebra finch Taeniopygia guttata genome.
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Genome Res
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2010
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1.72
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|
11
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Limited number of patrilines in horse domestication.
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Nat Genet
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2004
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1.70
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12
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Deterministic mutation rate variation in the human genome.
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Genome Res
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2002
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1.63
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|
13
|
Microsatellite evolution inferred from human-chimpanzee genomic sequence alignments.
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Proc Natl Acad Sci U S A
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2002
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1.59
|
|
14
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From wild wolf to domestic dog: gene expression changes in the brain.
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Brain Res Mol Brain Res
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2004
|
1.59
|
|
15
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Pleiotropic constraint hampers the resolution of sexual antagonism in vertebrate gene expression.
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Am Nat
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2008
|
1.51
|
|
16
|
Strong regional biases in nucleotide substitution in the chicken genome.
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Mol Biol Evol
|
2006
|
1.50
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|
17
|
The evolutionary causes and consequences of sex-biased gene expression.
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Nat Rev Genet
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2013
|
1.50
|
|
18
|
Fast-X on the Z: rapid evolution of sex-linked genes in birds.
|
Genome Res
|
2007
|
1.49
|
|
19
|
Ecological and genetic spatial structuring in the Canadian lynx.
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Nature
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2003
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1.49
|
|
20
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Evidence for turnover of functional noncoding DNA in mammalian genome evolution.
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Genomics
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2004
|
1.45
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|
21
|
Male-driven biased gene conversion governs the evolution of base composition in human alu repeats.
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Mol Biol Evol
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2005
|
1.44
|
|
22
|
Comparative genomics based on massive parallel transcriptome sequencing reveals patterns of substitution and selection across 10 bird species.
|
Mol Ecol
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2010
|
1.44
|
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23
|
Insertion-deletion polymorphisms (indels) as genetic markers in natural populations.
|
BMC Genet
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2008
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1.43
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|
24
|
Genetic mapping in a natural population of collared flycatchers (Ficedula albicollis): conserved synteny but gene order rearrangements on the avian Z chromosome.
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Genetics
|
2006
|
1.41
|
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25
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Reduced variation on the chicken Z chromosome.
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Genetics
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2004
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1.39
|
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26
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To what extent do microsatellite markers reflect genome-wide genetic diversity in natural populations?
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Mol Ecol
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2008
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1.37
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|
27
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Genomics of natural bird populations: a gene-based set of reference markers evenly spread across the avian genome.
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Mol Ecol
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2007
|
1.36
|
|
28
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The chicken (Gallus gallus) Z chromosome contains at least three nonlinear evolutionary strata.
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Genetics
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2008
|
1.33
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|
29
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Low levels of nucleotide diversity in mammalian Y chromosomes.
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Mol Biol Evol
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2003
|
1.33
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30
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Heterozygosity-fitness correlations in zebra finches: microsatellite markers can be better than their reputation.
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Mol Ecol
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2012
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1.33
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31
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Compositional evolution of noncoding DNA in the human and chimpanzee genomes.
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Mol Biol Evol
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2003
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1.32
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32
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Next generation molecular ecology.
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Mol Ecol
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2010
|
1.30
|
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33
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A gene-based genetic linkage map of the collared flycatcher (Ficedula albicollis) reveals extensive synteny and gene-order conservation during 100 million years of avian evolution.
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Genetics
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2008
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1.28
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34
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Genome-wide analysis of microsatellite polymorphism in chicken circumventing the ascertainment bias.
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Genome Res
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2008
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1.27
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35
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Chicken W: a genetically uniform chromosome in a highly variable genome.
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Proc Natl Acad Sci U S A
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2004
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1.26
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36
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Copy number variation, chromosome rearrangement, and their association with recombination during avian evolution.
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Genome Res
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2010
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1.26
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37
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Bottlenecked but long-lived: high genetic diversity retained in white-tailed eagles upon recovery from population decline.
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Biol Lett
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2006
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1.24
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38
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Sex-linkage of sexually antagonistic genes is predicted by female, but not male, effects in birds.
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Evolution
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2009
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1.22
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39
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The unique genomic properties of sex-biased genes: insights from avian microarray data.
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BMC Genomics
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2008
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1.22
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40
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Heterogeneity in the rate and pattern of germline mutation at individual microsatellite loci.
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Nucleic Acids Res
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2002
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1.22
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41
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Recombination drives vertebrate genome contraction.
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PLoS Genet
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2012
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1.20
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42
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Faster-Z evolution is predominantly due to genetic drift.
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Mol Biol Evol
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2009
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1.20
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43
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Dynamic evolution of base composition: causes and consequences in avian phylogenomics.
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Mol Biol Evol
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2011
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1.17
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44
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Ontogenetic complexity of sexual dimorphism and sex-specific selection.
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Mol Biol Evol
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2010
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1.16
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45
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Nonlinear dynamics of nonsynonymous (dN) and synonymous (dS) substitution rates affects inference of selection.
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Genome Biol Evol
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2009
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1.15
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46
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Levels of linkage disequilibrium in a wild bird population.
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Biol Lett
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2006
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1.15
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47
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Life history and the male mutation bias.
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Evolution
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2003
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1.14
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48
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Speciation in Ficedula flycatchers.
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Philos Trans R Soc Lond B Biol Sci
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2010
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1.14
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49
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The genomic landscape of short insertion and deletion polymorphisms in the chicken (Gallus gallus) Genome: a high frequency of deletions in tandem duplicates.
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Genetics
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2007
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1.13
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50
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Molecular evolution of genes in avian genomes.
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Genome Biol
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2010
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1.12
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51
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Fast accumulation of nonsynonymous mutations on the female-specific W chromosome in birds.
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J Mol Evol
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2005
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1.12
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52
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A high-density linkage map enables a second-generation collared flycatcher genome assembly and reveals the patterns of avian recombination rate variation and chromosomal evolution.
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Mol Ecol
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2014
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1.11
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53
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Y chromosome conserved anchored tagged sequences (YCATS) for the analysis of mammalian male-specific DNA.
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Mol Ecol
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2003
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1.11
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54
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Nonrandom distribution of genes with sex-biased expression in the chicken genome.
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Evolution
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2006
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1.09
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55
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Gene expression, synteny, and local similarity in human noncoding mutation rates.
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Mol Biol Evol
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2004
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1.09
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56
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Gene conversion drives the evolution of HINTW, an ampliconic gene on the female-specific avian W chromosome.
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Mol Biol Evol
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2005
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1.08
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57
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Insertion events of CR1 retrotransposable elements elucidate the phylogenetic branching order in galliform birds.
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Mol Biol Evol
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2006
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1.07
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58
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Are sex-biased genes more dispensable?
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Biol Lett
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2009
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1.07
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59
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Natural selection in avian protein-coding genes expressed in brain.
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Mol Ecol
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2008
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1.03
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60
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Demographic divergence history of pied flycatcher and collared flycatcher inferred from whole-genome re-sequencing data.
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PLoS Genet
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2013
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1.03
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61
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Substitution rate variation at human CpG sites correlates with non-CpG divergence, methylation level and GC content.
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Genome Biol
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2011
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1.01
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62
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MHC class II genes in European wolves: a comparison with dogs.
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Immunogenetics
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2002
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1.01
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63
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Rapid evolution of female-biased, but not male-biased, genes expressed in the avian brain.
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Mol Biol Evol
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2007
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1.00
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64
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Parallel divergence and degradation of the avian W sex chromosome.
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Trends Ecol Evol
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2007
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0.97
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65
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Twisted signatures of GC-biased gene conversion embedded in an evolutionary stable karyotype.
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Mol Biol Evol
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2013
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0.97
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66
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Transcriptome sequencing reveals the character of incomplete dosage compensation across multiple tissues in flycatchers.
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Genome Biol Evol
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2013
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0.96
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67
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A guide to the genomics of ecological speciation in natural animal populations.
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Ecol Lett
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2010
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0.95
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68
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QTL linkage mapping of zebra finch beak color shows an oligogenic control of a sexually selected trait.
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Evolution
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2011
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0.94
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69
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Quantification of adaptive evolution of genes expressed in avian brain and the population size effect on the efficacy of selection.
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Mol Biol Evol
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2009
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0.93
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70
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A low rate of simultaneous double-nucleotide mutations in primates.
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Mol Biol Evol
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2003
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0.93
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71
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Estimation of linkage disequilibrium and interspecific gene flow in Ficedula flycatchers by a newly developed 50k single-nucleotide polymorphism array.
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Mol Ecol Resour
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2014
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0.93
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72
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Ancient DNA reveals traces of Iberian Neolithic and Bronze Age lineages in modern Iberian horses.
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Mol Ecol
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2009
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0.91
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73
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Patterns of sequencing coverage bias revealed by ultra-deep sequencing of vertebrate mitochondria.
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BMC Genomics
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2014
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0.91
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74
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Adaptive molecular evolution of HINTW, a female-specific gene in birds.
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Mol Biol Evol
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2003
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0.90
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75
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Individual variation in microsatellite mutation rate in barn swallows.
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Mutat Res
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2004
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0.90
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76
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Inferring the demographic history of European Ficedula flycatcher populations.
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BMC Evol Biol
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2013
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0.89
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77
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Kr/Kc but not dN/dS correlates positively with body mass in birds, raising implications for inferring lineage-specific selection.
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Genome Biol
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2014
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0.89
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78
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Microsatellite genotyping of DNA isolated from claws left on tanned carnivore hides.
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Int J Legal Med
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2005
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0.89
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79
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Sampling strategies for species trees: the effects on phylogenetic inference of the number of genes, number of individuals, and whether loci are mitochondrial, sex-linked, or autosomal.
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Mol Phylogenet Evol
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2013
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0.89
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80
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Mismatch repair and mutational bias in microsatellite DNA.
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Trends Genet
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2002
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0.88
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81
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Third Report on Chicken Genes and Chromosomes 2015.
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Cytogenet Genome Res
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2015
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0.88
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82
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Significant selective constraint at 4-fold degenerate sites in the avian genome and its consequence for detection of positive selection.
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Genome Biol Evol
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2011
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0.88
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83
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The genomic signature of sexual selection in the genetic diversity of the sex chromosomes and autosomes.
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Evolution
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2012
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0.88
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84
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Effective size of fluctuating populations with two sexes and overlapping generations.
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Evolution
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2007
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0.88
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85
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Reconstruction of gross avian genome structure, organization and evolution suggests that the chicken lineage most closely resembles the dinosaur avian ancestor.
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BMC Genomics
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2014
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0.88
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86
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The relationship between microsatellite polymorphism and recombination hot spots in the human genome.
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Mol Biol Evol
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2008
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0.88
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87
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Substitution rate heterogeneity and the male mutation bias.
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J Mol Evol
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2006
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0.87
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88
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A high-density scan of the Z chromosome in Ficedula flycatchers reveals candidate loci for diversifying selection.
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Evolution
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2010
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0.87
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89
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Lack of dosage compensation accompanies the arrested stage of sex chromosome evolution in ostriches.
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Mol Biol Evol
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2013
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0.87
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90
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Is the rate of insertion and deletion mutation male biased?: Molecular evolutionary analysis of avian and primate sex chromosome sequences.
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Genetics
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2003
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0.86
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91
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Positive diversifying selection in avian Mx genes.
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Immunogenetics
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2008
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0.86
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92
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Evidence for GC-biased gene conversion as a driver of between-lineage differences in avian base composition.
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Genome Biol
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2014
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0.86
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93
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Trisomy and triploidy are sources of embryo mortality in the zebra finch.
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Proc Biol Sci
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2010
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0.85
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94
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Population genomics of the inbred Scandinavian wolf.
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Mol Ecol
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2009
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0.84
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95
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Genome-wide analysis in chicken reveals that local levels of genetic diversity are mainly governed by the rate of recombination.
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BMC Genomics
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2013
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0.84
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96
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High levels of gene expression explain the strong evolutionary constraint of mitochondrial protein-coding genes.
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Mol Biol Evol
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2012
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0.84
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97
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QTL linkage mapping of wing length in zebra finch using genome-wide single nucleotide polymorphisms markers.
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Mol Ecol
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2011
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0.83
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98
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Obtaining mtDNA genomes from next-generation transcriptome sequencing: a case study on the basal Passerida (Aves: Passeriformes) phylogeny.
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Mol Phylogenet Evol
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2010
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0.83
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99
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No evidence for Z-chromosome rearrangements between the pied flycatcher and the collared flycatcher as judged by gene-based comparative genetic maps.
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Mol Ecol
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2010
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0.83
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100
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Human genetics: mystery of the mutagenic male.
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Nature
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2002
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0.83
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101
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Adaptive evolution of gamete-recognition proteins in birds.
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J Mol Evol
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2008
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0.80
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102
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Do avian mitochondria recombine?
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J Mol Evol
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2004
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0.80
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103
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Human mutation--blame (mostly) men.
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Nat Genet
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2002
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0.80
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104
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Single-molecule analysis of the hypermutable tetranucleotide repeat locus D21S1245 through sperm genotyping: a heterogeneous pattern of mutation but no clear male age effect.
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Mol Biol Evol
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2003
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0.79
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105
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QTL and quantitative genetic analysis of beak morphology reveals patterns of standing genetic variation in an Estrildid finch.
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Mol Ecol
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2012
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0.79
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106
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Evolutionary constraint in flanking regions of avian genes.
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Mol Biol Evol
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2011
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0.77
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107
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Genomics: the dog has its day.
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Nature
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2005
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0.75
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