Francis J Doyle

Author PubWeight™ 123.83‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 Robustness of cellular functions. Cell 2004 6.65
2 Intercellular coupling confers robustness against mutations in the SCN circadian clock network. Cell 2007 4.87
3 Fully integrated artificial pancreas in type 1 diabetes: modular closed-loop glucose control maintains near normoglycemia. Diabetes 2012 3.40
4 Dynamic flux balance analysis of diauxic growth in Escherichia coli. Biophys J 2002 3.10
5 A novel computational model of the circadian clock in Arabidopsis that incorporates PRR7 and PRR9. Mol Syst Biol 2006 2.48
6 Robustness properties of circadian clock architectures. Proc Natl Acad Sci U S A 2004 2.31
7 Detection of a meal using continuous glucose monitoring: implications for an artificial beta-cell. Diabetes Care 2007 2.30
8 Feasibility of outpatient fully integrated closed-loop control: first studies of wearable artificial pancreas. Diabetes Care 2013 2.26
9 Prevention of nocturnal hypoglycemia using predictive alarm algorithms and insulin pump suspension. Diabetes Care 2010 2.18
10 Importance of input perturbations and stochastic gene expression in the reverse engineering of genetic regulatory networks: insights from an identifiability analysis of an in silico network. Genome Res 2003 2.09
11 A benchmark for methods in reverse engineering and model discrimination: problem formulation and solutions. Genome Res 2004 2.06
12 Safety constraints in an artificial pancreatic beta cell: an implementation of model predictive control with insulin on board. J Diabetes Sci Technol 2009 2.06
13 Bolus calculator: a review of four "smart" insulin pumps. Diabetes Technol Ther 2008 1.96
14 Identification of small molecule activators of cryptochrome. Science 2012 1.95
15 Iterative approach to model identification of biological networks. BMC Bioinformatics 2005 1.80
16 Sensitivity analysis of discrete stochastic systems. Biophys J 2005 1.70
17 Clinical evaluation of a personalized artificial pancreas. Diabetes Care 2012 1.69
18 Real-Time hypoglycemia prediction suite using continuous glucose monitoring: a safety net for the artificial pancreas. Diabetes Care 2010 1.66
19 Model-based blood glucose control for Type 1 diabetes via parametric programming. IEEE Trans Biomed Eng 2006 1.63
20 Zone model predictive control: a strategy to minimize hyper- and hypoglycemic events. J Diabetes Sci Technol 2010 1.62
21 Pilot studies of wearable outpatient artificial pancreas in type 1 diabetes. Diabetes Care 2012 1.57
22 Control to range for diabetes: functionality and modular architecture. J Diabetes Sci Technol 2009 1.55
23 A molecular model for intercellular synchronization in the mammalian circadian clock. Biophys J 2007 1.54
24 A model of the cell-autonomous mammalian circadian clock. Proc Natl Acad Sci U S A 2009 1.46
25 Run-to-run control of blood glucose concentrations for people with Type 1 diabetes mellitus. IEEE Trans Biomed Eng 2006 1.39
26 Prandial insulin dosing using run-to-run control: application of clinical data and medical expertise to define a suitable performance metric. Diabetes Care 2007 1.36
27 A Run-to-Run Control Strategy to Adjust Basal Insulin Infusion Rates in Type 1 Diabetes. J Process Control 2008 1.31
28 In silico evaluation platform for artificial pancreatic beta-cell development--a dynamic simulator for closed-loop control with hardware-in-the-loop. Diabetes Technol Ther 2009 1.24
29 Control-relevant models for glucose control using a priori patient characteristics. IEEE Trans Biomed Eng 2011 1.23
30 Enhanced 911/global position system wizard: a telemedicine application for the prevention of severe hypoglycemia--monitor, alert, and locate. J Diabetes Sci Technol 2009 1.20
31 In silico preclinical trials: methodology and engineering guide to closed-loop control in type 1 diabetes mellitus. J Diabetes Sci Technol 2009 1.19
32 A neuropeptide speeds circadian entrainment by reducing intercellular synchrony. Proc Natl Acad Sci U S A 2013 1.19
33 Design of the health monitoring system for the artificial pancreas: low glucose prediction module. J Diabetes Sci Technol 2012 1.14
34 Closed-loop control and advisory mode evaluation of an artificial pancreatic Beta cell: use of proportional-integral-derivative equivalent model-based controllers. J Diabetes Sci Technol 2008 1.09
35 Quest for the artificial pancreas: combining technology with treatment. IEEE Eng Med Biol Mag 2010 1.09
36 Glucose estimation and prediction through meal responses using ambulatory subject data for advisory mode model predictive control. J Diabetes Sci Technol 2007 1.07
37 Energy-efficient pulse-coupled synchronization strategy design for wireless sensor networks through reduced idle listening. IEEE Trans Signal Process 2012 1.06
38 Isochron-based phase response analysis of circadian rhythms. Biophys J 2006 1.06
39 Use of continuous glucose monitoring to estimate insulin requirements in patients with type 1 diabetes mellitus during a short course of prednisone. J Diabetes Sci Technol 2008 1.05
40 Wavelet measurement suggests cause of period instability in mammalian circadian neurons. J Biol Rhythms 2011 1.04
41 Quantitative performance metrics for robustness in circadian rhythms. Bioinformatics 2006 1.04
42 Modeling cortisol dynamics in the neuro-endocrine axis distinguishes normal, depression, and post-traumatic stress disorder (PTSD) in humans. PLoS Comput Biol 2012 1.03
43 Closed-loop control of artificial pancreatic Beta -cell in type 1 diabetes mellitus using model predictive iterative learning control. IEEE Trans Biomed Eng 2009 1.03
44 Calculating the insulin to carbohydrate ratio using the hyperinsulinaemic-euglycaemic clamp-a novel use for a proven technique. Diabetes Metab Res Rev 2007 1.02
45 Coordinated basal-bolus infusion for tighter postprandial glucose control in insulin pump therapy. J Diabetes Sci Technol 2009 1.02
46 Experimental evaluation of a recursive model identification technique for type 1 diabetes. J Diabetes Sci Technol 2009 1.02
47 Decreased protein expression and intermittent recoveries in BiP levels result from cellular stress during heterologous protein expression in Saccharomyces cerevisiae. Biotechnol Prog 2002 1.01
48 Proposed clinical application for tuning fuzzy logic controller of artificial pancreas utilizing a personalization factor. J Diabetes Sci Technol 2010 1.00
49 Optimal phase response functions for fast pulse-coupled synchronization in wireless sensor networks. IEEE Trans Signal Process 2012 0.99
50 Multicenter closed-loop insulin delivery study points to challenges for keeping blood glucose in a safe range by a control algorithm in adults and adolescents with type 1 diabetes from various sites. Diabetes Technol Ther 2014 0.99
51 Synchrony and entrainment properties of robust circadian oscillators. J R Soc Interface 2008 0.99
52 Sensitivity Measures for Oscillating Systems: Application to Mammalian Circadian Gene Network. IEEE Trans Automat Contr 2008 0.98
53 Clinical evaluation of an automated artificial pancreas using zone-model predictive control and health monitoring system. Diabetes Technol Ther 2014 0.98
54 Dynamic energy budgets in syntrophic symbiotic relationships between heterotrophic hosts and photoautotrophic symbionts. J Theor Biol 2009 0.97
55 Weakly circadian cells improve resynchrony. PLoS Comput Biol 2012 0.97
56 Collagen cross-linking using rose bengal and green light to increase corneal stiffness. Invest Ophthalmol Vis Sci 2013 0.96
57 A novel adaptive basal therapy based on the value and rate of change of blood glucose. J Diabetes Sci Technol 2009 0.95
58 Modeling the effects of subcutaneous insulin administration and carbohydrate consumption on blood glucose. J Diabetes Sci Technol 2010 0.95
59 Analysis of unfolded protein response during single-chain antibody expression in Saccaromyces cerevisiae reveals different roles for BiP and PDI in folding. Metab Eng 2005 0.94
60 Multicenter closed-loop/hybrid meal bolus insulin delivery with type 1 diabetes. Diabetes Technol Ther 2014 0.93
61 Spatiotemporal separation of PER and CRY posttranslational regulation in the mammalian circadian clock. Proc Natl Acad Sci U S A 2014 0.91
62 On influences of global and local cues on the rate of synchronization of oscillator networks. Automatica (Oxf) 2011 0.90
63 Clinical update on optimal prandial insulin dosing using a refined run-to-run control algorithm. J Diabetes Sci Technol 2009 0.90
64 Periodic-zone model predictive control for diurnal closed-loop operation of an artificial pancreas. J Diabetes Sci Technol 2013 0.90
65 Core modular blood and brain biomarkers in social defeat mouse model for post traumatic stress disorder. BMC Syst Biol 2013 0.90
66 Predicting subcutaneous glucose concentration using a latent-variable-based statistical method for type 1 diabetes mellitus. J Diabetes Sci Technol 2012 0.89
67 Velocity response curves support the role of continuous entrainment in circadian clocks. J Biol Rhythms 2010 0.88
68 Multi-objective blood glucose control for type 1 diabetes. Med Biol Eng Comput 2009 0.87
69 Circadian phase resetting via single and multiple control targets. PLoS Comput Biol 2008 0.87
70 Identifying fragilities in biochemical networks: robust performance analysis of Fas signaling-induced apoptosis. Biophys J 2008 0.86
71 Continuous-time identification of gene expression models. OMICS 2003 0.85
72 Phase sensitivity analysis of circadian rhythm entrainment. J Biol Rhythms 2007 0.85
73 Artificial pancreas (AP) clinical trial participants' acceptance of future AP technology. Diabetes Technol Ther 2014 0.85
74 Oscillator model reduction preserving the phase response: application to the circadian clock. Biophys J 2008 0.84
75 Core module biomarker identification with network exploration for breast cancer metastasis. BMC Bioinformatics 2012 0.84
76 Vulnerabilities in the tau network and the role of ultrasensitive points in tau pathophysiology. PLoS Comput Biol 2010 0.82
77 Modeling the Drosophila melanogaster circadian oscillator via phase optimization. J Biol Rhythms 2008 0.81
78 Clinically relevant hypoglycemia prediction metrics for event mitigation. Diabetes Technol Ther 2012 0.81
79 Multiple feedback loop design in the tryptophan regulatory network of Escherichia coli suggests a paradigm for robust regulation of processes in series. J R Soc Interface 2006 0.81
80 Cybernetic model predictive control of a continuous bioreactor with cell recycle. Biotechnol Prog 2003 0.80
81 Uncovering physiologic mechanisms of circadian rhythms and sleep/wake regulation through mathematical modeling. J Biol Rhythms 2007 0.80
82 Confidence from uncertainty--a multi-target drug screening method from robust control theory. BMC Syst Biol 2010 0.79
83 Estimating confidence intervals in predicted responses for oscillatory biological models. BMC Syst Biol 2013 0.79
84 Why is rose bengal more phototoxic to fibroblasts in vitro than in vivo? Photochem Photobiol 2013 0.78
85 Robust parameter estimation in a model for glucose kinetics in type 1 diabetes subjects. Conf Proc IEEE Eng Med Biol Soc 2006 0.78
86 A physiological systems approach to modeling and resetting of mouse thermoregulation under heat stress. J Appl Physiol (1985) 2011 0.78
87 A detailed modular analysis of heat-shock protein dynamics under acute and chronic stress and its implication in anxiety disorders. PLoS One 2012 0.78
88 Modeling the intra- and extracellular cytokine signaling pathway under heat stroke in the liver. PLoS One 2013 0.78
89 Fathead minnow steroidogenesis: in silico analyses reveals tradeoffs between nominal target efficacy and robustness to cross-talk. BMC Syst Biol 2010 0.78
90 Computational modeling of glucose transport in pancreatic β-cells identifies metabolic thresholds and therapeutic targets in diabetes. PLoS One 2012 0.78
91 Dynamic insulin on board: incorporation of circadian insulin sensitivity variation. J Diabetes Sci Technol 2013 0.78
92 An advisory protocol for rapid- and slow-acting insulin therapy based on a run-to-run methodology. Diabetes Technol Ther 2010 0.77
93 Automatic bolus and adaptive basal algorithm for the artificial pancreatic β-cell. Diabetes Technol Ther 2010 0.77
94 A top-down approach to mechanistic biological modeling: application to the single-chain antibody folding pathway. Biophys J 2008 0.76
95 In silico evaluation of an artificial pancreas combining exogenous ultrafast-acting technosphere insulin with zone model predictive control. J Diabetes Sci Technol 2013 0.76
96 Effects of light dynamics on coral spawning synchrony. Biol Bull 2011 0.75
97 Statistical analysis of the pulse-coupled synchronization strategy for wireless sensor networks. IEEE Trans Signal Process 2013 0.75
98 Systems biology approach to understanding post-traumatic stress disorder. Mol Biosyst 2015 0.75
99 Erratum. Application of Zone Model Predictive Control Artificial Pancreas During Extended Use of Infusion Set and Sensor: A Randomized Crossover-Controlled Home-Use Trial. Diabetes Care 2017;40:1096-1102. Diabetes Care 2017 0.75
100 Theoretical analysis of insulin-dependent glucose uptake heterogeneity in 3D bioreactor cell culture. Biotechnol Prog 2012 0.75