Published in Oncogene on April 18, 2005
Systematic identification of cell cycle-dependent yeast nucleocytoplasmic shuttling proteins by prediction of composite motifs. Proc Natl Acad Sci U S A (2009) 3.64
Global control of cell-cycle transcription by coupled CDK and network oscillators. Nature (2008) 3.32
Cell wall assembly in Saccharomyces cerevisiae. Microbiol Mol Biol Rev (2006) 3.08
Cell cycle-specified fluctuation of nucleosome occupancy at gene promoters. PLoS Genet (2006) 3.08
Development and applications of single-cell transcriptome analysis. Nat Methods (2011) 2.62
Control of cell cycle transcription during G1 and S phases. Nat Rev Mol Cell Biol (2013) 2.17
Cell biology of cnidarian-dinoflagellate symbiosis. Microbiol Mol Biol Rev (2012) 2.10
Periodic cyclin-Cdk activity entrains an autonomous Cdc14 release oscillator. Cell (2010) 1.91
Taking the time to make important decisions: the checkpoint effector kinases Chk1 and Chk2 and the DNA damage response. DNA Repair (Amst) (2009) 1.89
A competitive transcription factor binding mechanism determines the timing of late cell cycle-dependent gene expression. Mol Cell (2010) 1.74
An overview of Cdk1-controlled targets and processes. Cell Div (2010) 1.66
Inferring transcriptional modules from ChIP-chip, motif and microarray data. Genome Biol (2006) 1.64
A conserved G₁ regulatory circuit promotes asynchronous behavior of nuclei sharing a common cytoplasm. Cell Cycle (2010) 1.63
In control of biology: of mice, men and Foxes. Biochem J (2006) 1.50
Polo kinase controls cell-cycle-dependent transcription by targeting a coactivator protein. Nature (2006) 1.42
Modelling the network of cell cycle transcription factors in the yeast Saccharomyces cerevisiae. BMC Bioinformatics (2006) 1.41
Reconstructing gene-regulatory networks from time series, knock-out data, and prior knowledge. BMC Syst Biol (2007) 1.34
The more the merrier: comparative analysis of microarray studies on cell cycle-regulated genes in fission yeast. Yeast (2006) 1.32
Epigenetic aberrations and cancer. Mol Cancer (2006) 1.29
H2A.Z functions to regulate progression through the cell cycle. Mol Cell Biol (2006) 1.27
Defining the budding yeast chromatin-associated interactome. Mol Syst Biol (2010) 1.19
DNA replication stress differentially regulates G1/S genes via Rad53-dependent inactivation of Nrm1. EMBO J (2012) 1.17
Linking DNA replication checkpoint to MBF cell-cycle transcription reveals a distinct class of G1/S genes. EMBO J (2012) 1.16
The E2F functional analogue SBF recruits the Rpd3(L) HDAC, via Whi5 and Stb1, and the FACT chromatin reorganizer, to yeast G1 cyclin promoters. EMBO J (2009) 1.13
Nucleus-specific and cell cycle-regulated degradation of mitogen-activated protein kinase scaffold protein Ste5 contributes to the control of signaling competence. Mol Cell Biol (2008) 1.10
Periodic mRNA synthesis and degradation co-operate during cell cycle gene expression. Mol Syst Biol (2014) 1.10
The fate of the messenger is pre-determined: a new model for regulation of gene expression. Biochim Biophys Acta (2013) 1.08
Cyclin-dependent kinases are regulators and effectors of oscillations driven by a transcription factor network. Mol Cell (2012) 1.07
Exploring the yeast acetylome using functional genomics. Cell (2012) 1.05
The fission yeast homeodomain protein Yox1p binds to MBF and confines MBF-dependent cell-cycle transcription to G1-S via negative feedback. PLoS Genet (2009) 1.05
Phosphorylation of the Sic1 inhibitor of B-type cyclins in Saccharomyces cerevisiae is not essential but contributes to cell cycle robustness. Genetics (2007) 1.04
Topology and control of the cell-cycle-regulated transcriptional circuitry. Genetics (2014) 1.03
A refined two-hybrid system reveals that SCF(Cdc4)-dependent degradation of Swi5 contributes to the regulatory mechanism of S-phase entry. Proc Natl Acad Sci U S A (2008) 0.98
Transcriptome changes and cAMP oscillations in an archaeal cell cycle. BMC Cell Biol (2007) 0.98
Dual regulation by pairs of cyclin-dependent protein kinases and histone deacetylases controls G1 transcription in budding yeast. PLoS Biol (2009) 0.98
Stb1 collaborates with other regulators to modulate the G1-specific transcriptional circuit. Mol Cell Biol (2008) 0.97
Phosphate-activated cyclin-dependent kinase stabilizes G1 cyclin to trigger cell cycle entry. Mol Cell Biol (2013) 0.97
Whi5 regulation by site specific CDK-phosphorylation in Saccharomyces cerevisiae. PLoS One (2009) 0.97
A chemical-genetic screen to unravel the genetic network of CDC28/CDK1 links ubiquitin and Rad6-Bre1 to cell cycle progression. Proc Natl Acad Sci U S A (2011) 0.96
Cdc28 kinase activity regulates the basal transcription machinery at a subset of genes. Proc Natl Acad Sci U S A (2012) 0.95
A systematic screen for transcriptional regulators of the yeast cell cycle. Genetics (2008) 0.91
Ergodic sets as cell phenotype of budding yeast cell cycle. PLoS One (2012) 0.90
The yeast AMPK homolog SNF1 regulates acetyl coenzyme A homeostasis and histone acetylation. Mol Cell Biol (2013) 0.89
The checkpoint transcriptional response: make sure to turn it off once you are satisfied. Cell Cycle (2012) 0.89
Repressive chromatin affects factor binding at yeast HO (homothallic switching) promoter. J Biol Chem (2011) 0.88
Precise regulation of gene expression dynamics favors complex promoter architectures. PLoS Comput Biol (2009) 0.88
Frequency control of cell cycle oscillators. Curr Opin Genet Dev (2010) 0.87
High-Resolution Profiling of a Synchronized Diurnal Transcriptome from Chlamydomonas reinhardtii Reveals Continuous Cell and Metabolic Differentiation. Plant Cell (2015) 0.87
Protein kinase C regulates late cell cycle-dependent gene expression. Mol Cell Biol (2012) 0.86
IFT proteins accumulate during cell division and localize to the cleavage furrow in Chlamydomonas. PLoS One (2012) 0.86
Repression of G1/S transcription is mediated via interaction of the GTB motifs of Nrm1 and Whi5 with Swi6. Mol Cell Biol (2013) 0.85
Restriction of histone gene transcription to S phase by phosphorylation of a chromatin boundary protein. Genes Dev (2011) 0.85
A novel fluorescent assay for sucrose transporters. Plant Methods (2012) 0.84
What makes the engine hum: Rad6, a cell cycle supercharger. Cell Cycle (2012) 0.84
Xbp1 directs global repression of budding yeast transcription during the transition to quiescence and is important for the longevity and reversibility of the quiescent state. PLoS Genet (2013) 0.84
Bck2 acts through the MADS box protein Mcm1 to activate cell-cycle-regulated genes in budding yeast. PLoS Genet (2013) 0.84
Cyclin-Dependent Kinase Regulation of Diurnal Transcription in Chlamydomonas. Plant Cell (2015) 0.84
Many forkheads in the road to regulation. Symposium on forkhead transcription factor networks in development, signalling and disease. EMBO Rep (2008) 0.83
Cyclin-dependent kinase 8 regulates mitotic commitment in fission yeast. Mol Cell Biol (2012) 0.83
Candida albicans cyclin Clb4 carries S-phase cyclin activity. Eukaryot Cell (2010) 0.82
Checkpoints couple transcription network oscillator dynamics to cell-cycle progression. Genome Biol (2014) 0.82
Role of a Candida albicans Nrm1/Whi5 homologue in cell cycle gene expression and DNA replication stress response. Mol Microbiol (2012) 0.82
Kinase Cak1 functionally interacts with the PAF1 complex and phosphatase Ssu72 via kinases Ctk1 and Bur1. Mol Genet Genomics (2005) 0.82
Capsule growth in Cryptococcus neoformans is coordinated with cell cycle progression. MBio (2014) 0.81
Inferring a transcriptional regulatory network of the cytokinesis-related genes by network component analysis. BMC Syst Biol (2009) 0.81
Control of the yeast cell cycle with a photocleavable alpha-factor analogue. Angew Chem Int Ed Engl (2006) 0.81
Mediator can regulate mitotic entry and direct periodic transcription in fission yeast. Mol Cell Biol (2014) 0.80
Transcript level coordination of carbon pathways during silicon starvation-induced lipid accumulation in the diatom Thalassiosira pseudonana. New Phytol (2016) 0.80
Roles of the RAM signaling network in cell cycle progression in Saccharomyces cerevisiae. Curr Genet (2006) 0.80
Cell cycle-dependent transcription factors control the expression of yeast telomerase RNA. RNA (2013) 0.79
RNA-dependent regulation of the cell wall stress response. Nucleic Acids Res (2012) 0.79
ELM1 is required for multidrug resistance in Saccharomyces cerevisiae. Genetics (2006) 0.78
Yeast karyopherin Kap95 is required for cell cycle progression at Start. BMC Cell Biol (2010) 0.78
Inference of gene regulation functions from dynamic transcriptome data. Elife (2016) 0.78
The cell cycle rallies the transcription cycle: Cdc28/Cdk1 is a cell cycle-regulated transcriptional CDK. Transcription (2012) 0.77
Functional overlap among distinct G1/S inhibitory pathways allows robust G1 arrest by yeast mating pheromones. Mol Biol Cell (2013) 0.77
Defective in mitotic arrest 1 (Dma1) ubiquitin ligase controls G1 cyclin degradation. J Biol Chem (2012) 0.77
Degradation of Ndd1 by APC/C(Cdh1) generates a feed forward loop that times mitotic protein accumulation. Nat Commun (2015) 0.77
Cdk1 activity acts as a quantitative platform for coordinating cell cycle progression with periodic transcription. Nat Commun (2016) 0.77
The mitotic Clb cyclins are required to alleviate HIR-mediated repression of the yeast histone genes at the G1/S transition. Biochim Biophys Acta (2011) 0.76
Whi5 phosphorylation embedded in the G1/S network dynamically controls critical cell size and cell fate. Nat Commun (2016) 0.76
A novel function of the mitochondrial transcription factor Mtf1 in fission yeast; Mtf1 regulates the nuclear transcription of srk1. Nucleic Acids Res (2010) 0.76
A Dynamic Gene Regulatory Network Model That Recovers the Cyclic Behavior of Arabidopsis thaliana Cell Cycle. PLoS Comput Biol (2015) 0.76
The yeast Ess1 prolyl isomerase controls Swi6 and Whi5 nuclear localization. G3 (Bethesda) (2014) 0.75
The interplay between transcription and mRNA degradation in Saccharomyces cerevisiae. Microb Cell (2017) 0.75
FBXW7/hCDC4 is a general tumor suppressor in human cancer. Cancer Res (2007) 3.79
Global analysis of protein sumoylation in Saccharomyces cerevisiae. J Biol Chem (2004) 2.60
Deregulation of cyclin E in human cells interferes with prereplication complex assembly. J Cell Biol (2004) 2.48
hCDC4 gene mutations in endometrial cancer. Cancer Res (2002) 2.36
The pRb-related protein p130 is regulated by phosphorylation-dependent proteolysis via the protein-ubiquitin ligase SCF(Skp2). Genes Dev (2002) 2.33
Ubiquitylation of cyclin E requires the sequential function of SCF complexes containing distinct hCdc4 isoforms. Mol Cell (2006) 2.22
Improved flow cytometric analysis of the budding yeast cell cycle. Cell Cycle (2002) 2.17
SCFCdc4 acts antagonistically to the PGC-1alpha transcriptional coactivator by targeting it for ubiquitin-mediated proteolysis. Genes Dev (2008) 1.78
Phosphorylation of the septin cdc3 in g1 by the cdc28 kinase is essential for efficient septin ring disassembly. Cell Cycle (2002) 1.76
S-phase checkpoint controls mitosis via an APC-independent Cdc20p function. Nat Cell Biol (2003) 1.72
Cyclin E overexpression impairs progression through mitosis by inhibiting APC(Cdh1). J Cell Biol (2007) 1.58
Mutation of hCDC4 leads to cell cycle deregulation of cyclin E in cancer. Cancer Res (2004) 1.45
Cks1-dependent proteasome recruitment and activation of CDC20 transcription in budding yeast. Nature (2003) 1.42
Reduced spermatogonial proliferation and decreased fertility in mice overexpressing cyclin E in spermatogonia. Cell Cycle (2010) 1.41
Myc targets Cks1 to provoke the suppression of p27Kip1, proliferation and lymphomagenesis. EMBO J (2007) 1.29
Cyclin-dependent kinase-associated proteins Cks1 and Cks2 are essential during early embryogenesis and for cell cycle progression in somatic cells. Mol Cell Biol (2008) 1.28
Ubiquitin ligases and cell cycle control. Annu Rev Biochem (2013) 1.22
Requirement of Cks2 for the first metaphase/anaphase transition of mammalian meiosis. Science (2003) 1.18
Improved identification of SUMO attachment sites using C-terminal SUMO mutants and tailored protease digestion strategies. J Proteome Res (2006) 1.14
A kinase-independent function of Cks1 and Cdk1 in regulation of transcription. Mol Cell (2005) 1.14
Cyclin-dependent kinase subunit (Cks) 1 or Cks2 overexpression overrides the DNA damage response barrier triggered by activated oncoproteins. Proc Natl Acad Sci U S A (2011) 1.11
Distinct mechanisms control the stability of the related S-phase cyclins Clb5 and Clb6. Mol Cell Biol (2006) 1.10
Differential contribution of Bud6p and Kar9p to microtubule capture and spindle orientation in S. cerevisiae. J Cell Biol (2004) 1.07
Cyclin-dependent kinases are regulators and effectors of oscillations driven by a transcription factor network. Mol Cell (2012) 1.07
Phosphorylation of Mcm2 by Cdc7 promotes pre-replication complex assembly during cell-cycle re-entry. Mol Cell (2009) 1.06
Cyclin E dysregulation and chromosomal instability in endometrial cancer. Oncogene (2004) 0.99
Both SCF(Cdc4alpha) and SCF(Cdc4gamma) are required for cyclin E turnover in cell lines that do not overexpress cyclin E. Cell Cycle (2008) 0.98
Cks1, Cdk1, and the 19S proteasome collaborate to regulate gene induction-dependent nucleosome eviction in yeast. Mol Cell Biol (2010) 0.95
Parkin-dependent degradation of the F-box protein Fbw7β promotes neuronal survival in response to oxidative stress by stabilizing Mcl-1. Mol Cell Biol (2013) 0.93
Detection of low molecular weight derivatives of cyclin E1 is a function of cyclin E1 protein levels in breast cancer. Cancer Res (2006) 0.92
The protease activity of yeast separase (esp1) is required for anaphase spindle elongation independently of its role in cleavage of cohesin. Genetics (2008) 0.90
Kar9p-independent microtubule capture at Bud6p cortical sites primes spindle polarity before bud emergence in Saccharomyces cerevisiae. Mol Biol Cell (2002) 0.90
Fbw7α and Fbw7γ collaborate to shuttle cyclin E1 into the nucleolus for multiubiquitylation. Mol Cell Biol (2012) 0.88
Protein-protein interactions involved in the recognition of p27 by E3 ubiquitin ligase. Biochem J (2003) 0.86
Cks1 is dispensable for survival in Saccharomyces cerevisiae. Cell Cycle (2004) 0.82
Germline exclusion of Cks1 in the mouse reveals a metaphase I role for Cks proteins in male and female meiosis. Cell Cycle (2003) 0.78
Cks1 enhances transcription efficiency at the GAL1 locus by linking the Paf1 complex to the 19S proteasome. Eukaryot Cell (2013) 0.77
Switching of melanocyte pigmentation associated with pituitary pars intermedia tumors in Rb+/- and p27-/- female mice with yellow pelage. Comp Med (2003) 0.76
Stacking the deck: putting your Ases where you want them. Cell Cycle (2011) 0.75
Cdc20 in S-phase: the Banquo at replication's banquet. Cell Cycle (2004) 0.75